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S. Hird · SciRah

Researcher profile · Semantic Scholar

S. Hird

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S. Hird — researcher profile on SciRah

h-index: 24
Works: 58
Citations: 3,187

Most-cited papers

Applications of next-generation sequencing to phylogeography and phylogenetics.
J. McCormack, S. Hird, A. Zellmer, B. Carstens +1 more
2013Molecular Phylogenetics and Evolution643 citations
Semantic Scholar
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences.
John E. McCormack, James M. Maley, S. Hird, E. Derryberry +2 more
2009Molecular Phylogenetics and Evolution575 citations Open access
Semantic Scholar
Comparative Gut Microbiota of 59 Neotropical Bird Species
S. Hird, C. Sánchez, B. Carstens, R. Brumfield
2015Frontiers in Microbiology265 citations Open access
Semantic Scholar
Evolutionary Biology Needs Wild Microbiomes
S. Hird
2017Frontiers in Microbiology219 citations Open access
Semantic Scholar
Ancient hybridization and mitochondrial capture between two species of chipmunks
J. Good, S. Hird, N. Reid, J. Demboski +3 more
2008Molecular Ecology183 citations
Semantic Scholar
Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)
S. Hird, Bryan C. Carstens, S. Cardiff, D. Dittmann +1 more
2014PeerJ152 citations Open access
Semantic Scholar
Avian gut microbiomes taking flight.
Kasun H. Bodawatta, S. Hird, Kirsten Grond, M. Poulsen +1 more
2021Trends in Microbiology125 citations
Semantic Scholar
Evolution of the indoor biome.
L. Martin, R. Adams, A. Bateman, H. Bik +21 more
2015Trends in Ecology & Evolution93 citations
Semantic Scholar
Poor fit to the multispecies coalescent is widely detectable in empirical data.
N. Reid, S. Hird, Jeremy M. Brown, T. Pelletier +3 more
2014Systematic Biology84 citations Open access
Semantic Scholar
The Carnivorous Pale Pitcher Plant Harbors Diverse, Distinct, and Time-Dependent Bacterial Communities
Margaret M. Koopman, Danielle M. Fuselier, S. Hird, B. Carstens
2010Applied and Environmental Microbiology78 citations Open access
Semantic Scholar
Evolutionary signal in the gut microbiomes of 74 bird species from Equatorial Guinea
Darien Capunitan, O. Johnson, R. Terrill, S. Hird
2020Molecular Ecology71 citations
Semantic Scholar
Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata.
A. Zellmer, Margaret M. Hanes, S. Hird, B. Carstens
2012Systematic Biology71 citations
Semantic Scholar
Divergence with gene flow within the recent chipmunk radiation (Tamias)
Jack M. Sullivan, J. Demboski, K. Bell, S. Hird +3 more
2014Heredity57 citations Open access
Semantic Scholar
Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses
Holly H. Ganz, Ladan Doroud, Alana J. Firl, S. Hird +2 more
2017mSystems49 citations Open access
Semantic Scholar
Assessment of gene flow across a hybrid zone in red‐tailed chipmunks (Tamias ruficaudus)
S. Hird, Jack M. Sullivan
2009Molecular Ecology48 citations
Semantic Scholar
No evidence for phylosymbiosis in western chipmunk species.
Kirsten Grond, K. Bell, J. Demboski, Malia A. Santos +2 more
2019FEMS Microbiology Ecology39 citations Open access
Semantic Scholar
The disciplinary matrix of holobiont biology.
S. Bordenstein, The Holobiont Biology Network, M. Gilbert, Nichole A. Ginnan +19 more
2024Science38 citations Open access
Semantic Scholar
PRGmatic: an efficient pipeline for collating genome‐enriched second‐generation sequencing data using a ‘provisional‐reference genome’
S. Hird, R. Brumfield, B. Carstens
2011Molecular Ecology Resources38 citations
Semantic Scholar
The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status
S. Hird, Holly H. Ganz, J. Eisen, W. Boyce
2018Msphere34 citations Open access
Semantic Scholar
Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.
S. Hird, L. Kubatko, B. Carstens
2010Molecular Phylogenetics and Evolution34 citations
Semantic Scholar
Sex Differences in Gut Microbial Development of Preterm Infant Twins in Early Life: A Longitudinal Analysis
Jie Chen, Hong-Fei Li, S. Hird, Ming-Hui Chen +3 more
2021Frontiers in Cellular and Infection Microbiology33 citations Open access
Semantic Scholar
Next-generation sequencing reveals phylogeographic structure Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences and a species tree for recent bird divergences
J. McCormack, James M. Maley, S. Hird, E. Derryberry
202129 citations
Semantic Scholar
Elevation Correlates With Significant Changes in Relative Abundance in Hummingbird Fecal Microbiota, but Composition Changes Little
Elizabeth A. Herder, Austin R. Spence, M. Tingley, S. Hird
2021Frontiers in Ecology and Evolution26 citations Open access
Semantic Scholar
Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria
H. Bik, A. Alexiev, S. Aulakh, L. Bharadwaj +11 more
2019Msphere24 citations Open access
Semantic Scholar
Spatial heterogeneity of the shorebird gastrointestinal microbiome
Kirsten Grond, Hannah Guilani, S. Hird
2020Royal Society Open Science23 citations Open access
Semantic Scholar
Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Kirsten Grond, J. Perreau, Wesley T. Loo, A. J. Spring +2 more
2019PLoS ONE23 citations Open access
Semantic Scholar
Ixodes scapularis microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing
J. C. Gil, Zeinab H. Helal, G. Risatti, S. Hird
2020PeerJ22 citations Open access
Semantic Scholar
Examination of nuclear loci across a zone of mitochondrial introgression between Tamias ruficaudus and T. amoenus
N. Reid, S. Hird, A. Schulte-Hostedde, Jack M. Sullivan
201019 citations
Semantic Scholar
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover
Kirsten Grond, Artemis S. Louyakis, S. Hird
2023mSystems15 citations Open access
Semantic Scholar
Introgression at differentially aged hybrid zones in red-tailed chipmunks
S. Hird, N. Reid, J. Demboski, Jack M. Sullivan
2010Genetica15 citations
Semantic Scholar
Multiomics Characterization of the Canada Goose Fecal Microbiome Reveals Selective Efficacy of Simulated Metagenomes
J. C. Gil, S. Hird
2022Microbiology spectrum13 citations Open access
Semantic Scholar
Red Fluorescence of European Hedgehog (Erinaceus europaeus) Spines Results from Free-Base Porphyrins of Potential Microbial Origin
Randy Hamchand, Amy M. Lafountain, Rhea Büchel, K. Maas +4 more
2021Journal of Chemical Ecology12 citations
Semantic Scholar
Context Is Key: Comparative Biology Illuminates the Vertebrate Microbiome
S. Hird
2020mBio7 citations Open access
Semantic Scholar
lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis
S. Hird
2012PLoS ONE6 citations Open access
Semantic Scholar
Microbiomes, Community Ecology, and the Comparative Method
S. Hird
2019mSystems5 citations Open access
Semantic Scholar
Body Size Poorly Predicts Host-Associated Microbial Diversity in Wild Birds
Elizabeth A. Herder, Heather R. Skeen, H. Lutz, S. Hird
2023Microbiology spectrum4 citations Open access
Semantic Scholar
Canada goose fecal microbiota correlate with geography more than host‐associated factors
J. C. Gil, Heather R. Skeen, Celeste Cuellar, S. Hird
2024Journal of Avian Biology2 citations Open access
Semantic Scholar
Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Kirsten Grond, J. Perreau, Wesley T. Loo, A. J. Spring +2 more
2019PLoS ONE2 citations Open access
Semantic Scholar
Evolution of the indoor biome NESCent Working Group on the Evolutionary Biology of the Built Environment
L. Martin, R. Adams, A. Bateman, H. Bik +20 more
20152 citations
Semantic Scholar
Corrigendum to “Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences” [Mol. Phylogenet. Evol. 62 (2012) 397–406]
J. McCormack, James M. Maley, S. Hird, E. Derryberry +2 more
20132 citations
Semantic Scholar
Vaginal Microbiome Is Associated with Breed and Pregnancy Status in Beef Cattle
B. Fragomeni, S. Hird, A. Zezeski, T. W. Geary +2 more
2026Animals1 citations
Semantic Scholar
The elephant (bird) in the room: unknown mechanisms and unresolved impacts of low DNA yields in avian microbiome research
Kevin D. Kohl, Rindy C. Anderson, Catherine R. Andreadis, Marcella D. Baiz +25 more
2026Animal Microbiome1 citations Open access
Semantic Scholar
Archaeal diversity in the microbiomes of four wild bird species
T. Hunter, Lauren Chance, Chris S. Elphick, S. Hird
2025Microbiology spectrum1 citations Open access
Semantic Scholar
Canada goose fecal microbiota correlate with geography more than host-associated co-factors
J. C. Gil, Celeste Cuellar, S. Hird
2022bioRxiv1 citations Open access
Semantic Scholar
Eggshell microbiota of a brood parasite reflects environment, not species
B. Basso, Emma Poryanda, E. Grames, Kirsten Grond +2 more
2022Journal of Ornithology1 citations
Semantic Scholar
Novel computational tools and utilization of the gut microbiota for phylogeographic inference
S. Hird
20131 citations Open access
Semantic Scholar
Zellmer AJ, Hanes MM, Hird SM, Carstens BC.. Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata. Syst Biol 61: 763-777
A. Zellmer, Margaret M. Hanes, S. Hird, B. Carstens
20121 citations
Semantic Scholar
Genome sequence of Bacillus paranthracis strain SCM10-01, isolated from the intestinal mucosa of a wild Synallaxis cabanisi collected in Peru
Eric Finkelstein, S. Hird
2026bioRxiv0 citations Open access
Semantic Scholar
PSXI-24 Vaginal microbiome is associated with breed and pregnancy status in beef cattle.
B. Fragomeni, E. Forster, S. Hird, A. L. Zezeski +2 more
2025Journal of Animal Science0 citations Open access
Semantic Scholar
Deciphering the ecoevolutionary recipe of milk microbiomes.
S. Hird
2023Trends in Ecology & Evolution0 citations
Semantic Scholar

Frequent co-authors

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B. Carstens×8
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B. Carstens — researcher profile on SciRah
Kirsten Grond×7
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R. Brumfield×6
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Jack M. Sullivan×6
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N. Reid — researcher profile on SciRah

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J. Demboski — researcher profile on SciRah

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J. McCormack — researcher profile on SciRah

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A. Zellmer — researcher profile on SciRah

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