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L. Kubatko · SciRah

Researcher profile · Semantic Scholar

L. Kubatko

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L. Kubatko — researcher profile on SciRah

h-index: 34
Works: 109
Citations: 7,007

Most-cited papers

Quartet Inference from SNP Data Under the Coalescent Model
J. Chifman, L. Kubatko
2014Bioinform.1,086 citations Open access
Semantic Scholar
STEM: species tree estimation using maximum likelihood for gene trees under coalescence
L. Kubatko, B. Carstens, L. Knowles
2009Bioinform.460 citations Open access
Semantic Scholar
Reduced Susceptibility to Praziquantel among Naturally Occurring Kenyan Isolates of Schistosoma mansoni
Sandra D. Melman, M. Steinauer, C. Cunningham, L. Kubatko +9 more
2009PLoS Neglected Tropical Diseases422 citations Open access
Semantic Scholar
Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model.
Chen Meng, L. Kubatko
2009Theoretical Population Biology261 citations
Semantic Scholar
HyDe: a Python Package for Genome-Scale Hybridization Detection
Paul D. Blischak, J. Chifman, A. D. Wolfe, L. Kubatko
2017bioRxiv259 citations Open access
Semantic Scholar
Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites.
J. Chifman, L. Kubatko
2014Journal of Theoretical Biology255 citations Open access
Semantic Scholar
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
A. Zayed, J. Wainaina, Guillermo Domínguez-Huerta, É. Pelletier +28 more
2022Science207 citations Open access
Semantic Scholar
Species Delimitation and Global Biosecurity
L. Boykin, K. Armstrong, L. Kubatko, P. De. Barro
2011Evolutionary bioinformatics online194 citations Open access
Semantic Scholar
Estimating species trees : practical and theoretical aspects
L. Knowles, L. Kubatko
2010166 citations
Semantic Scholar
Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys
C. Roos, D. Zinner, L. Kubatko, Christian J. Schwarz +12 more
2011BMC Evolutionary Biology156 citations Open access
Semantic Scholar
Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.
Hua-Teng Huang, Qi-Xin He, L. Kubatko, L. L. Knowles
2010Systematic Biology156 citations Open access
Semantic Scholar
Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes.
L. Kubatko, H. L. Gibbs, E. Bloomquist
2011Systematic Biology132 citations
Semantic Scholar
Classes of explicit phylogenetic networks and their biological and mathematical significance
Sungsik Kong, Joan Carles Pons, L. Kubatko, Kristina Wicke
2021Journal of Mathematical Biology93 citations Open access
Semantic Scholar
The Effect of Gene Flow on Coalescent‐based Species‐Tree Inference
Colby Long, L. Kubatko
2017Systematic Biology91 citations Open access
Semantic Scholar
Cassava brown streak virus has a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance
T. Alicai, J. Ndunguru, P. Sseruwagi, F. Tairo +6 more
2016Scientific Reports88 citations Open access
Semantic Scholar
An invariants-based method for efficient identification of hybrid species from large-scale genomic data
L. Kubatko, J. Chifman
2015BMC Evolutionary Biology79 citations Open access
Semantic Scholar
Effects of missing data on species tree estimation under the coalescent.
R. Hovmöller, L. Knowles, L. Kubatko
2013Molecular Phylogenetics and Evolution78 citations
Semantic Scholar
More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure
A. Stone, F. Battistuzzi, L. Kubatko, G. Perry +3 more
2010Philosophical Transactions of the Royal Society B: Biological Sciences78 citations Open access
Semantic Scholar
Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling
David Gerard, H. Gibbs, L. Kubatko
2011BMC Evolutionary Biology72 citations Open access
Semantic Scholar
SNP genotyping and parameter estimation in polyploids using low‐coverage sequencing data
Paul D. Blischak, L. Kubatko, A. D. Wolfe, B. Berger
2018Bioinform.67 citations Open access
Semantic Scholar
Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data
Sungsik Kong, L. Kubatko
2020bioRxiv54 citations Open access
Semantic Scholar
Median-joining network analysis of SARS-CoV-2 genomes is neither phylogenetic nor evolutionary
Santiago J. Sánchez-Pacheco, Sungsik Kong, Paola Pulido-Santacruz, R. Murphy +1 more
2020Proceedings of the National Academy of Sciences of the United States of America52 citations Open access
Semantic Scholar
Diusion Models in Population Genetics
L. Kubatko
201552 citations
Semantic Scholar
Inference of Phylogenetic Networks from Sequence Data using Composite Likelihood
Sungsik Kong, D. Swofford, L. Kubatko
2022bioRxiv43 citations Open access
Semantic Scholar
Distinct Patterns of Emergence of SARS-CoV-2 Spike Variants including N501Y in Clinical Samples in Columbus Ohio
Huo-Lin Tu, Matthew R. Avenarius, L. Kubatko, Matthew Hunt +7 more
2021bioRxiv42 citations Open access
Semantic Scholar
Estimating species trees using approximate Bayesian computation.
H. Fan, L. Kubatko
2011Molecular Phylogenetics and Evolution42 citations
Semantic Scholar
Consistency of SVDQuartets and Maximum Likelihood for Coalescent-based Species Tree Estimation
Matthew Wascher, L. Kubatko
2019bioRxiv37 citations Open access
Semantic Scholar
Comparison of methods for rooting phylogenetic trees: a case study using Orcuttieae (Poaceae: Chloridoideae).
L. Boykin, L. Kubatko, T. Lowrey
2010Molecular Phylogenetics and Evolution36 citations
Semantic Scholar
Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids
Paul D. Blischak, L. Kubatko, A. D. Wolfe
2015bioRxiv34 citations Open access
Semantic Scholar
Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.
S. Hird, L. Kubatko, B. Carstens
2010Molecular Phylogenetics and Evolution34 citations
Semantic Scholar
Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies
K. Thompson, L. Kubatko
2013BMC Bioinformatics31 citations Open access
Semantic Scholar
DNA barcoding invasive insects: database roadblocks
L. Boykin, K. Armstrong, L. Kubatko, P. De. Barro
2012Invertebrate systematics31 citations
Semantic Scholar
Review and guide to a future naming system of African Bemisia tabaci species
L. Boykin, T. Kinene, J. Wainaina, Anders Savill +11 more
201830 citations Open access
Semantic Scholar
Split Scores: A Tool to Quantify Phylogenetic Signal in Genome‐Scale Data
E. Allman, L. Kubatko, J. Rhodes
2016Systematic Biology29 citations Open access
Semantic Scholar
Phylogenetics of a Rapid, Continental Radiation: Diversification, Biogeography, and Circumscription of the Beardtongues (Penstemon; Plantaginaceae)
A. D. Wolfe, Paul D. Blischak, L. Kubatko
2021bioRxiv24 citations Open access
Semantic Scholar
Identifiability and Reconstructibility of Species Phylogenies Under a Modified Coalescent
Colby Long, L. Kubatko
2017Bulletin of Mathematical Biology23 citations Open access
Semantic Scholar
The Multispecies Coalescent
L. Kubatko
2019Handbook of Statistical Genomics22 citations
Semantic Scholar
Global phylogenetic relationships, population structure and gene flow estimation of Trialeurodes vaporariorum (Greenhouse whitefly)
J. Wainaina, P. De. Barro, L. Kubatko, M. Kehoe +3 more
2017Bulletin of entomological research20 citations Open access
Semantic Scholar
Conservation genetics and breeding system of Penstemon debilis (Plantaginaceae), a rare beardtongue endemic to oil shale talus in western Colorado, USA
A. D. Wolfe, Amy Mcmullen-Sibul, V. Tepedino, L. Kubatko +2 more
201420 citations Open access
Semantic Scholar
Estimation of Speciation Times Under the Multispecies Coalescent
Jing Peng, D. Swofford, L. Kubatko
2019bioRxiv17 citations Open access
Semantic Scholar
Rooting phylogenetic trees under the coalescent model using site pattern probabilities
Yuan Tian, L. Kubatko
2017BMC Evolutionary Biology17 citations Open access
Semantic Scholar
A codon model of nucleotide substitution with selection on synonymous codon usage
L. Kubatko, Premal Shah, Radu Herbei, M. Gilchrist
2014bioRxiv16 citations Open access
Semantic Scholar
Gene tree rooting methods give distributions that mimic the coalescent process.
Yuan Tian, L. Kubatko
2014Molecular Phylogenetics and Evolution14 citations
Semantic Scholar
Statistical Applications in Genetics and Molecular Biology Coalescent Time Distributions in Trees of Arbitrary Size Sam Efromovich , University of Texas at Dallas
L. Kubatko
201114 citations
Semantic Scholar
A phylogenetic approach to inferring the order in which mutations arise during cancer progression
Yuan Gao, Jeffrey Gaither, J. Chifman, L. Kubatko
2020bioRxiv13 citations Open access
Semantic Scholar
Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference.
Jeffrey Gaither, L. Kubatko
2016Journal of Theoretical Biology13 citations
Semantic Scholar
SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data
Paul D. Blischak, L. Kubatko, A. D. Wolfe
2017bioRxiv12 citations Open access
Semantic Scholar
Distribution of coalescent histories under the coalescent model with gene flow.
Yuan Tian, L. Kubatko
2016Molecular Phylogenetics and Evolution10 citations Open access
Semantic Scholar
Population genetics of Penstemon albomarginatus (Plantaginaceae), a rare Mojave Desert species of conservation concern
A. D. Wolfe, T. NeCamp, Susan Fassnacht, Paul D. Blischak +1 more
2016Conservation Genetics10 citations
Semantic Scholar
Evolutionary insights of Bean common mosaic necrosis virus and Cowpea aphid-borne mosaic virus
J. Wainaina, L. Kubatko, J. Harvey, E. Ateka +4 more
2019PeerJ9 citations Open access
Semantic Scholar

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