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Alexandros Armaos · SciRah

Researcher profile · Semantic Scholar

Alexandros Armaos

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Alexandros Armaos — researcher profile on SciRah

h-index: 18
Works: 50
Citations: 1,418

Most-cited papers

catRAPID omics v2.0: going deeper and wider in the prediction of protein–RNA interactions
Alexandros Armaos, A. Colantoni, G. Proietti, Jakob Rupert +1 more
2021Nucleic Acids Res.185 citations Open access
Semantic Scholar
RNA structure drives interaction with proteins
Natalia Sanchez de Groot, Alexandros Armaos, Ricardo Graña-Montes, Marion Alriquet +3 more
2019Nature Communications173 citations Open access
Semantic Scholar
Quantitative predictions of protein interactions with long noncoding RNAs
D. Cirillo, M. Blanco, Alexandros Armaos, A. Buness +4 more
2016Nature Methods118 citations
Semantic Scholar
Phase separation drives X-chromosome inactivation: a hypothesis
A. Cerase, Alexandros Armaos, C. Neumayer, P. Avner +2 more
2019Nature Structural & Molecular Biology113 citations Open access
Semantic Scholar
RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data
Benjamin Lang, Alexandros Armaos, G. Tartaglia
2018Nucleic Acids Res.103 citations Open access
Semantic Scholar
Structural analysis of SARS-CoV-2 genome and predictions of the human interactome
Andrea Vandelli, Michele Monti, E. Milanetti, Alexandros Armaos +5 more
2020bioRxiv99 citations Open access
Semantic Scholar
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, G. Calloni, Marc Torrent Burgas +3 more
2020bioRxiv72 citations Open access
Semantic Scholar
A high-throughput approach to profile RNA structure
Riccardo Delli Ponti, Stefanie Marti, Alexandros Armaos, G. Tartaglia
2016Nucleic Acids Research55 citations Open access
Semantic Scholar
The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism
Giulia Guiducci, A. Paone, A. Tramonti, G. Giardina +12 more
2019Nucleic Acids Research52 citations Open access
Semantic Scholar
Probing TDP-43 condensation using an in silico designed aptamer
E. Zacco, Owen Kantelberg, E. Milanetti, Alexandros Armaos +10 more
2022Nature Communications50 citations Open access
Semantic Scholar
catGRANULE 2.0: accurate predictions of liquid-liquid phase separating proteins at single amino acid resolution
Michele Monti, Jonathan Fiorentino, Dimitrios Miltiadis-Vrachnos, G. Bini +4 more
2025Genome Biology44 citations Open access
Semantic Scholar
LINE-1 regulates cortical development by acting as long non-coding RNAs
D. Mangoni, A. Simi, Pierre Lau, Alexandros Armaos +12 more
2023Nature Communications38 citations Open access
Semantic Scholar
HOTAIRM1 regulates neuronal differentiation by modulating NEUROGENIN 2 and the downstream neurogenic cascade
Jessica Rea, Valentina Menci, P. Tollis, Tiziana Santini +9 more
2020Cell Death and Disease36 citations Open access
Semantic Scholar
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes
C. Cava, Alexandros Armaos, Benjamin Lang, G. Tartaglia +1 more
2022Scientific Reports30 citations Open access
Semantic Scholar
A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs
Riccardo Delli Ponti, Alexandros Armaos, Stefanie Marti, G. Tartaglia
2018bioRxiv24 citations Open access
Semantic Scholar
Thermometer: a webserver to predict protein thermal stability
Mattia Miotto, Alexandros Armaos, Lorenzo Di Rienzo, G. Ruocco +2 more
2022Bioinform.22 citations Open access
Semantic Scholar
Predicting nuclear G-quadruplex RNA-binding proteins with roles in transcription and phase separation
Johanna Luige, Alexandros Armaos, G. Tartaglia, U. A. Ørom
2024Nature Communications21 citations Open access
Semantic Scholar
omiXcore: a web server for prediction of protein interactions with large RNA
Alexandros Armaos, D. Cirillo, Gian Gaetano Tartaglia
2017Bioinform.20 citations Open access
Semantic Scholar
ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins
A. M. Mas, Enrique Goñi, I. Ruiz de los Mozos, Aida Arcas +14 more
2023bioRxiv17 citations Open access
Semantic Scholar
RNA‐protein interactions: Central players in coordination of regulatory networks
Alexandros Armaos, E. Zacco, Natalia Sanchez de Groot, G. Tartaglia
2020Bioessays17 citations Open access
Semantic Scholar
Prediction of protein-RNA interactions from single-cell transcriptomic data
Jonathan Fiorentino, Alexandros Armaos, A. Colantoni, G. Tartaglia
2023bioRxiv15 citations Open access
Semantic Scholar
CROSSalive: a web server for predicting the in vivo structure of RNA molecules
R. D. Ponti, Alexandros Armaos, Andrea Vandelli, G. Tartaglia
2019bioRxiv15 citations Open access
Semantic Scholar
Rationalizing the effects of RNA modifications on protein interactions
Andrea Vandelli, Laura Broglia, Alexandros Armaos, Riccardo Delli Ponti +1 more
2024bioRxiv14 citations Open access
Semantic Scholar
Aggregation is a Context-Dependent Constraint on Protein Evolution
Michele Monti, Alexandros Armaos, Marco Fantini, A. Pastore +1 more
2021bioRxiv13 citations Open access
Semantic Scholar
Advanced Protein Alignments Based on Sequence, Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme
D. Vlachakis, Alexandros Armaos, S. Kossida
2017Mathematics and Computer Science11 citations
Semantic Scholar
MAPK/MAK/MRK overlapping kinase (MOK) controls microglial inflammatory/type-I IFN responses via Brd4 and is involved in ALS
Jesús A. Pérez-Cabello, Lucía Silvera-Carrasco, Jaime M. Franco, V. Capilla-González +14 more
2023bioRxiv10 citations Open access
Semantic Scholar
A high-throughput approach to predict A-to-I effects on RNA structure indicates a change of double-stranded content in non-coding RNAs
Riccardo Delli Ponti, L. Broglia, Andrea Vandelli, Alexandros Armaos +3 more
2022bioRxiv10 citations Open access
Semantic Scholar
Computationally-designed aptamers targeting RAD51-BRCA2 interaction impair homologous recombination and induce synthetic lethality
Giulia Milordini, E. Zacco, Mirco Masi, Alexandros Armaos +11 more
2025Nature Communications9 citations Open access
Semantic Scholar
The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates
Andrea Vandelli, Magdalena Arnal Segura, Michele Monti, Jonathan Fiorentino +6 more
2022bioRxiv9 citations Open access
Semantic Scholar
Xist IncRNA forms silencing granules that induce heterochromatin formation and repressive complexes recruitment by phase separation
A. Cerase, Alexandros Armaos, Fernando Cid, P. Avner +1 more
2018bioRxiv8 citations Open access
Semantic Scholar
The role of low-complexity repeats in RNA–RNA interactions and a deep learning framework for duplex prediction
A. Setti, G. Bini, Flaminia Pellegrini, Valentino Maiorca +11 more
2026Nature Communications4 citations Open access
Semantic Scholar
ASSP; the Antibody Secondary Structure Profile search tool
D. Vlachakis, Alexandros Armaos, I. Kasampalidis, Arianna Filntisi +1 more
2014International Conference on Algorithms for Big Data4 citations
Semantic Scholar
SAM68 is a multifunctional post-transcriptional regulator of cardiomyocyte differentiation
Laura Broglia, A. Dasti, M. Antonelli, Guy Aoun +15 more
2026Nucleic Acids Research2 citations Open access
Semantic Scholar
Light stress regulates pigment concentrations, growth, and gene expression in hatchery‐cultivated Kappaphycus alvarezii (Solieriaceae, Rhodophyta)
April Mae Tabonda-Nabor, Bea A. Crisostomo, Alexandros Armaos, G. Schweizer +3 more
2026Journal of Phycology2 citations
Semantic Scholar
Synchronized motion of interface residues for evaluating protein–RNA complex binding affinity: Application to aptamer‐mediated inhibition of TDP‐43 aggregates
Francesco Paolo Panei, Lorenzo Di Rienzo, E. Zacco, Alexandros Armaos +3 more
2024Protein Science2 citations Open access
Semantic Scholar
Computationally Designed RNA Aptamers Enable Selective Detection of FUS Pathology in ALS
E. Zacco, Martina Gilodi, Abigail Pascoal dos Santos, Alexandros Armaos +10 more
2026bioRxiv1 citations Open access
Semantic Scholar
scRAPID-web: a web server for predicting protein–RNA interactions from single-cell transcriptomics
Jonathan Fiorentino, Alexandros Armaos, Chiara Montrone, A. Colantoni +1 more
2025bioRxiv1 citations Open access
Semantic Scholar
Design and characterization of G-quadruplex RNA aptamers reveal RNA-binding by KDM5 lysine demethylases
Johanna Luige, T. Conrad, Alexandros Armaos, Annita Louloupi +5 more
2025Computational and Structural Biotechnology Journal1 citations Open access
Semantic Scholar
Accurate Predictions of Liquid-Liquid Phase Separating Proteins at Single Amino Acid Resolution
Michele Monti, Jonathan Fiorentino, Dimitrios Miltiadis-Vrachnos, G. Bini +4 more
2024bioRxiv1 citations Open access
Semantic Scholar
HERCULES: an integrative deep-learning framework for predicting RNA-binding propensity and mutation effects at single-residue resolution
Jonathan Fiorentino, Michele Monti, Alexandros Armaos, Dimitrios Miltiadis-Vrachnos +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
Decoding RNA–RNA Interactions: The Role of Low-Complexity Repeats and a Deep Learning Framework for Sequence-Based Prediction
A. Setti, G. Bini, Flaminia Pellegrini, Valentino Maiorca +11 more
2025bioRxiv0 citations Open access
Semantic Scholar
Computationally-designed aptamers targeting RAD51-BRCA2 interaction inhibit RAD51 nuclear recruitment
Giulia Milordini, E. Zacco, Alexandros Armaos, F. Di Palma +11 more
2025bioRxiv0 citations Open access
Semantic Scholar
Phytohormones in Kappaphycus alvarezii: Genomic Insights, Activation Thresholds, and Implications for Seaweed-derived Biostimulants
Bea A. Crisostomo, Leah Ferger, April Mae Tabonda-Nabor, Alexandros Armaos +5 more
2025bioRxiv0 citations Open access
Semantic Scholar
Identification and prediction of G-quadruplex RNA-binding proteins with roles in transcription and phase separation
Johanna Luige, Alexandros Armaos, G. Tartaglia, U. A. Vang Ørom
2023bioRxiv0 citations Open access
Semantic Scholar
The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer
Alexandros Armaos, François Serra, I. Núñez-Carpintero, Ji-Heui Seo +7 more
2023bioRxiv0 citations Open access
Semantic Scholar
The RNA-Binding Protein SAM68 regulates cardiomyocyte differentiation by enhancing Gata4 translation
A. Dasti, M. Antonelli, M. Segura, Alexandros Armaos +6 more
2022bioRxiv0 citations Open access
Semantic Scholar
Reconstructing protein interactions at enhancer-promoter regions in prostate cancer
Alexandros Armaos, François Serra, I. Núñez-Carpintero, Ji-Heui Seo +7 more
20220 citations
Semantic Scholar
Computational characterization of protein-RNA interactions and implications for phase separation
Alexandros Armaos
20200 citations
Semantic Scholar
Insights into the structure-driven 1 protein interactivity of RNA molecules
N. D. de Groot, Alexandros Armaos, R. Montes, Marion Alriquet +3 more
20180 citations
Semantic Scholar
Insights into the structure-driven protein interactivity of RNA molecules
N. D. de Groot, Alexandros Armaos, R. Montes, Marion Alriquet +3 more
2018bioRxiv0 citations Open access
Semantic Scholar

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