Joanna M. Kasprzak

Most-cited papers

1. MODOMICS: a database of RNA modification pathways. 2008 update

   A. Czerwoniec, S. Dunin-Horkawicz, E. Purta, K. Kaminska +4 more

   2008Nucleic Acids Research1,110 citations Open access

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2. YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.

   E. Purta, K. Kaminska, Joanna M. Kasprzak, J. Bujnicki +1 more

   2008RNA: A publication of the RNA Society75 citations Open access

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3. The architecture of the Schizosaccharomyces pombe CCR4-NOT complex

   Marta Ukleja, J. Cuéllar, Aleksandra Siwaszek, Joanna M. Kasprzak +4 more

   2016Nature Communications56 citations Open access

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4. Virtual screening strategies in drug design - methods and applications

   E. Bielska, X. Lucas, A. Czerwoniec, Joanna M. Kasprzak +2 more

   201155 citations Open access

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5. Molecular evolution of dihydrouridine synthases

   Joanna M. Kasprzak, A. Czerwoniec, J. Bujnicki

   2012BMC Bioinformatics42 citations Open access

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6. Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes.

   S. Sunita, K. Tkaczuk, E. Purta, Joanna M. Kasprzak +3 more

   2008Journal of Molecular Biology41 citations

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7. Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue

   B. Van Laer, M. Roovers, Lina Wauters, Joanna M. Kasprzak +7 more

   2015Nucleic Acids Research36 citations Open access

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8. Computational modeling of protein-RNA complex structures.

   I. Tuszyńska, D. Matelska, Marcin Magnus, G. Chojnowski +4 more

   2014Methods35 citations

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9. MODOMICS: a database of RNA modification pathways, update 2008

   A. Czerwoniec, S. Dunin-Horkawicz, E. Purta, K. Kaminska +4 more

   2009Nucleic Acids Res.28 citations

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10. Crystal structure of a fructokinase homolog from Halothermothrix orenii.

    T. Chua, J. Seetharaman, Joanna M. Kasprzak, C. Ng +4 more

    2010Journal of Structural Biology21 citations

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11. Structural and degradative aspects of ornithine decarboxylase antizyme inhibitor 2

    Bruno Ramos‐Molina, A. Lambertos, A. López-Contreras, Joanna M. Kasprzak +4 more

    2014FEBS Open Bio17 citations Open access

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12. A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair

    M. Jaciuk, P. Swuec, V. Gaur, Joanna M. Kasprzak +6 more

    2019DNA Repair15 citations Open access

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13. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.

    P. Piątkowski, Joanna M. Kasprzak, Deepak Kumar, Marcin Magnus +2 more

    2016Methods in molecular biology14 citations

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14. Modeling of Protein-RNA Complex Structures Using Computational Docking Methods.

    B. Madan, Joanna M. Kasprzak, I. Tuszyńska, Marcin Magnus +3 more

    2016Methods in molecular biology10 citations

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15. The OB-fold proteins of the Trypanosoma brucei editosome execute RNA-chaperone activity

    Christin Voigt, Mateusz Dobrychłop, E. Kruse, A. Czerwoniec +6 more

    2018Nucleic Acids Research9 citations Open access

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16. Structure and intrinsic disorder of the proteins of theTrypanosoma brucei editosome

    A. Czerwoniec, Joanna M. Kasprzak, Patrycja Bytner, Mateusz Dobrychłop +1 more

    2015FEBS Letters6 citations

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17. Template Based Prediction of Three‐Dimensional Protein Structures: Fold Recognition and Comparative Modeling

    J. Kosiński, K. Tkaczuk, Joanna M. Kasprzak, J. Bujnicki

    20084 citations

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18. Structural and functional insights into tRNA binding and adenosine N 1-methylation by an archaeal Trm 10 homologue

    B. Van Laer, M. Roovers, Lina Wauters, Joanna M. Kasprzak +8 more

    20161 citations

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19. Molecular evolution of dihydrouridine synthases

    Joanna M. Kasprzak, A. Czerwoniec, J. Bujnicki

    2012BMC Bioinformatics1 citations Open access

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20. Surface-driven RNA-refolding by the OB-fold proteins of the Trypanosoma brucei editosome

    Christin Voigt, Mateusz Dobrychłop, E. Kruse, A. Czerwoniec +4 more

    2017bioRxiv0 citations Open access

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21. Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.4 angstrom resolution.

    B. Van Laer, M. Roovers, Lina Wauters, Joanna M. Kasprzak +6 more

    20160 citations

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22. Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.1 angstrom resolution.

    B. Van Laer, M. Roovers, Lina Wauters, Joanna M. Kasprzak +6 more

    20160 citations

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23. Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine

    B. Van Laer, M. Roovers, Lina Wauters, Joanna M. Kasprzak +6 more

    20140 citations

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24. Structure of Halothermothrix orenii fructokinase (FRK)

    T. Chua, J. Seetharaman, Joanna M. Kasprzak, C. Ng +4 more

    20100 citations

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25. Crystal Structure of a ribosomal RNA methyltranferase

    S. Sunita, K. Tkaczuk, E. Purta, Joanna M. Kasprzak +3 more

    20080 citations

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