Researcher profile · Semantic Scholar

A. Waardenberg

h-index: 16
Works: 31
Citations: 1,856

Most-cited papers

The Genome Sequence of Taurine Cattle: A window to ruminant biology and evolution
C. Elsik, R. Tellam, K. Worley, Richard A. Gibbs +303 more
2009Science1,219 citations Open access
Semantic Scholar
Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen*
S. Kozlov, A. Waardenberg, Kasper Engholm-Keller, Jonathan W. Arthur +2 more
2015Molecular & Cellular Proteomics85 citations Open access
Semantic Scholar
NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets
R. Bouveret, A. Waardenberg, N. Schonrock, M. Ramialison +14 more
2015eLife69 citations Open access
Semantic Scholar
Genetic networks governing heart development.
A. Waardenberg, M. Ramialison, R. Bouveret, R. Harvey
2014Cold Spring Harbor Perspectives in Medicine52 citations Open access
Semantic Scholar
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation
Kasper Engholm-Keller, A. Waardenberg, J. A. Müller, Jesse R. Wark +6 more
2019PLoS Biology47 citations Open access
Semantic Scholar
CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments
A. Waardenberg, Bassett Maya, R. Bouveret, R. Harvey
2015BMC Bioinformatics43 citations Open access
Semantic Scholar
Uptake of Schistosoma mansoni extracellular vesicles by human endothelial and monocytic cell lines and impact on vascular endothelial cell gene expression.
Desalegn W. Kifle, Sujittra Chaiyadet, A. Waardenberg, I. Wise +7 more
2020International Journal of Parasitology41 citations
Semantic Scholar
Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency
W. Bottje, Byung-Whi Kong, A. Reverter, A. Waardenberg +2 more
2017BMC Systems Biology39 citations Open access
Semantic Scholar
Phosphoinositide 3-Kinase (PI3K(p110α)) Directly Regulates Key Components of the Z-disc and Cardiac Structure*
A. Waardenberg, B. Bernardo, D. Ng, P. Shepherd +7 more
2011Journal of Biological Chemistry34 citations Open access
Semantic Scholar
consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correction
A. Waardenberg, M. Field
2019bioRxiv33 citations Open access
Semantic Scholar
TWIST1 Homodimers and Heterodimers Orchestrate Lineage-Specific Differentiation
Xiao-Chen Fan, A. Waardenberg, Madeleine Demuth, P. Osteil +5 more
2020Molecular and Cellular Biology30 citations Open access
Semantic Scholar
Irreversible triggers for hypertrophic cardiomyopathy are established in the early postnatal period.
L. Cannon, Ze-Yan Yu, T. Marciniec, A. Waardenberg +10 more
2015Journal of the American College of Cardiology29 citations Open access
Semantic Scholar
A presynaptic phosphosignaling hub for lasting homeostatic plasticity.
J. A. Müller, J. Betzin, Jorge Santos-Tejedor, Annika Mayer +14 more
2020Cell Reports28 citations Open access
Semantic Scholar
An Analytically and Diagnostically Sensitive RNA Extraction and RT-qPCR Protocol for Peripheral Blood Mononuclear Cells
D. Browne, J. Brady, A. Waardenberg, C. Loiseau +1 more
2020Frontiers in Immunology24 citations Open access
Semantic Scholar
PDGFRα signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair
N. S. Asli, Munira Xaymardan, Elvira Forte, A. Waardenberg +24 more
2017bioRxiv23 citations Open access
Semantic Scholar
A systematic approach to simultaneously evaluate safety, immunogenicity, and efficacy of novel tuberculosis vaccination strategies
Visai Muruganandah, Harindra D. Sathkumara, Saparna Pai, C. Rush +3 more
2020Science Advances19 citations Open access
Semantic Scholar
Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
A. Waardenberg, B. Homan, S. Mohamed, R. Harvey +1 more
2016Open Biology9 citations Open access
Semantic Scholar
Analysis of steric effects in DamID profiling of transcription factor target genes.
M. Ramialison, A. Waardenberg, N. Schonrock, T. Doan +3 more
2017Genomics7 citations Open access
Semantic Scholar
Small extracellular vesicles but not microvesicles from Opisthorchis viverrini promote cell proliferation in human cholangiocytes
Sujittra Chaiyadet, J. Sotillo, M. Smout, Martha M. Cooper +7 more
2023bioRxiv6 citations Open access
Semantic Scholar
An Always Correlated gene expression landscape for ovine skeletal muscle, lessons learnt from comparison with an “equivalent” bovine landscape
Wei Sun, N. Hudson, A. Reverter, A. Waardenberg +4 more
2012BMC Research Notes6 citations Open access
Semantic Scholar
Statistical Analysis of ATM-Dependent Signaling in Quantitative Mass Spectrometry Phosphoproteomics.
A. Waardenberg
2017Methods in molecular biology5 citations
Semantic Scholar
Erratum to: ‘CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments’
A. Waardenberg, Samuel D. Bassett, R. Bouveret, R. Harvey
2016BMC Bioinformatics5 citations Open access
Semantic Scholar
Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle
A. Waardenberg, A. Reverter, C. Wells, B. P. Dalrymple
2008BMC Systems Biology4 citations Open access
Semantic Scholar
Author response: NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets
R. Bouveret, A. Waardenberg, N. Schonrock, M. Ramialison +14 more
20152 citations Open access
Semantic Scholar
T cell differentiation and lineage choice are determined by the TCR
J. Miles, Thomas S. Watkins, S. Darko, Kuatrinnus Wijaya +10 more
2022The FASEB Journal0 citations Open access
Semantic Scholar
Peer Review #2 of "Efficacy of computational predictions of the functional effect of idiosyncratic pharmacogenetic variants (v0.3)"
Hannah Mcconnell, T. Daniel, Andrews Corresp, Matt A. Field +241 more
20210 citations Open access
Semantic Scholar
TWIST1 homo- and heterodimers orchestrate specificity control in embryonic stem cell lineage differentiation and craniofacial development
Xiao-Chen Fan, A. Waardenberg, Madeleine Demuth, P. Osteil +5 more
2019bioRxiv0 citations Open access
Semantic Scholar
Identification of the TWIST1 interactome in craniofacial development using bioID
Xiao-Chen Fan, Nicolas Fossat, Kasper Engholm-Keller, A. Waardenberg +4 more
20170 citations Open access
Semantic Scholar
Transcriptional Targets in Heart Development and Off-Targets in Congenital Heart Disease
R. Harvey, A. Waardenberg, N. Schonrock, R. Bouveret +2 more
20170 citations Open access
Semantic Scholar
disease has wider effects than previously thought.
Megan Rowton, Ivan P. Moskowitz, A. Waardenberg, A. Bondue +4 more
20150 citations
Semantic Scholar
An Always Correlated gene expression landscape for ovine skeletal muscle, lessons learnt from comparison with an “equivalent” bovine landscape
Wei Sun, N. Hudson, A. Reverter, A. Waardenberg +4 more
2012BMC Research Notes0 citations Open access
Semantic Scholar

Kasper Engholm-Keller

×4

N. Schonrock×4

S. Mohamed×4

D. Doolan×4

R. Tellam×3

T. Doan×3

D. de Jong×3

A. Bondue×3