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K. Agata · SciRah

Researcher profile · Semantic Scholar

K. Agata

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K. Agata — researcher profile on SciRah

h-index: 70
Works: 275
Citations: 12K

Most-cited papers

RNA interference by feeding in vitro synthesized double-stranded RNA to planarians: methodology and dynamics
Labib Rouhana, Jennifer A. Weiss, David J. Forsthoefel, Hayoung Lee +5 more
2013Developmental Dynamics230 citations Open access
Semantic Scholar
The molecular logic for planarian regeneration along the anterior–posterior axis
Y. Umesono, J. Tasaki, Yui Nishimura, Martina Hrouda +6 more
2013Nature185 citations
Semantic Scholar
Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping
Yoshinobu Uno, C. Nishida, Hiroshi Tarui, S. Ishishita +11 more
2012PLoS ONE119 citations Open access
Semantic Scholar
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals
Masahiro Uesaka, Osamu Nishimura, Yasuhiro Go, K. Nakashima +2 more
2014BMC Genomics110 citations Open access
Semantic Scholar
The ancestral gene repertoire of animal stem cells
Alexandre Alié, T. Hayashi, I. Sugimura, M. Manuel +5 more
2015Proceedings of the National Academy of Sciences of the United States of America109 citations Open access
Semantic Scholar
Aquatic adaptation and the evolution of smell and taste in whales
Takushi Kishida, J. Thewissen, T. Hayakawa, H. Imai +1 more
2015Zoological Letters107 citations Open access
Semantic Scholar
Gene activation-associated long noncoding RNAs function in mouse preimplantation development
Nobuhiko Hamazaki, Masahiro Uesaka, K. Nakashima, K. Agata +1 more
2015Development98 citations Open access
Semantic Scholar
Planarian shows decision-making behavior in response to multiple stimuli by integrative brain function
Takeshi Inoue, H. Hoshino, Taiga Yamashita, Seira Shimoyama +1 more
2015Zoological Letters96 citations Open access
Semantic Scholar
How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants
H. Toju, Hirotoshi Sato, Satoshi Yamamoto, Kohmei Kadowaki +4 more
2013Ecology and Evolution85 citations Open access
Semantic Scholar
Thermosensory Signaling by TRPM Is Processed by Brain Serotonergic Neurons to Produce Planarian Thermotaxis
Takeshi Inoue, Taiga Yamashita, K. Agata
2014Journal of Neuroscience74 citations Open access
Semantic Scholar
Sequential actions of β-catenin and Bmp pattern the oral nerve net in Nematostella vectensis
Hiroshi Watanabe, A. Kuhn, Manami Fushiki, K. Agata +3 more
2014Nature Communications72 citations Open access
Semantic Scholar
Inheritance of a Nuclear PIWI from Pluripotent Stem Cells by Somatic Descendants Ensures Differentiation by Silencing Transposons in Planarian.
N. Shibata, Makoto Kashima, Taisuke Ishiko, Osamu Nishimura +7 more
2016Developmental Cell71 citations Open access
Semantic Scholar
A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology
M. Matsunami, Miyuki Suzuki, Yoshikazu Haramoto, A. Fukui +11 more
2018bioRxiv53 citations Open access
Semantic Scholar
Direct estimation of de novo mutation rates in a chimpanzee parent-offspring trio by ultra-deep whole genome sequencing
Shoji Tatsumoto, Yasuhiro Go, Kentarou Fukuta, Hideki Noguchi +6 more
2017Scientific Reports50 citations Open access
Semantic Scholar
Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica
Osamu Nishimura, Kazutaka Hosoda, Eri Kawaguchi, Shigenobu Yazawa +4 more
2015PLoS ONE46 citations Open access
Semantic Scholar
Cas9 ribonucleoprotein complex allows direct and rapid analysis of coding and noncoding regions of target genes in Pleurodeles waltl development and regeneration.
Miyuki Suzuki, Toshinori Hayashi, Takeshi Inoue, K. Agata +6 more
2018Developmental Biology44 citations Open access
Semantic Scholar
Transcription activator‐like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration
Toshinori Hayashi, K. Sakamoto, T. Sakuma, N. Yokotani +5 more
2014Development, Growth and Differentiation43 citations
Semantic Scholar
Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species
Osamu Nishimura, Yukako Hirao, Hiroshi Tarui, K. Agata
2012BMC Genomics36 citations Open access
Semantic Scholar
Genome Features of “Dark-Fly”, a Drosophila Line Reared Long-Term in a Dark Environment
M. Izutsu, Jun Zhou, Yuzo Sugiyama, Osamu Nishimura +5 more
2012PLoS ONE35 citations Open access
Semantic Scholar
Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration.
Shinichi Hayashi, Akane Kawaguchi, I. Uchiyama, Aiko Kawasumi-Kita +9 more
2015Developmental Biology34 citations Open access
Semantic Scholar
Dynamic Transport and Cementation of Skeletal Elements Build Up the Pole-and-Beam Structured Skeleton of Sponges.
Sohei Nakayama, K. Arima, Kotoe Kawai, K. Mohri +12 more
2015Current Biology34 citations Open access
Semantic Scholar
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
An Yang, Akane Kawaguchi, Chen Zhao, A. Toyoda +9 more
2018Zoological Letters32 citations Open access
Semantic Scholar
RNA Interference in Planarians: Feeding and Injection of Synthetic dsRNA.
N. Shibata, K. Agata
2018Methods in molecular biology27 citations
Semantic Scholar
Pupal development and pigmentation process of a polka-dotted fruit fly, Drosophila guttifera (Insecta, Diptera)
Yuichi Fukutomi, Keiji Matsumoto, K. Agata, Noriko Funayama +1 more
2017Development, Genes and Evolution24 citations
Semantic Scholar
Planarian regeneration: a classic topic claiming new attention.
E. Saló, K. Agata
2012International Journal of Developmental Biology24 citations Open access
Semantic Scholar
Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration.
M. Kragl, Kathleen Roensch, Ina Nüsslein, A. Tazaki +5 more
2013Developmental Biology22 citations Open access
Semantic Scholar
Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island
T. Hayakawa, A. Sawada, Akifumi S. Tanabe, S. Fukuda +14 more
2018Primates21 citations
Semantic Scholar
Newt Hoxa13 has an essential and predominant role in digit formation during development and regeneration.
T. Takeuchi, Haruka Matsubara, Fumina Minamitani, Yukio Satoh +9 more
2022Development19 citations Open access
Semantic Scholar
Recent identification of an ERK signal gradient governing planarian regeneration.
K. Agata, J. Tasaki, E. Nakajima, Y. Umesono
2014Zoology19 citations Open access
Semantic Scholar
Spatio-temporal neural stem cell behavior leads to both perfect and imperfect structural brain regeneration in adult newts
Yuko Urata, W. Yamashita, Takeshi Inoue, K. Agata
2018Biology Open18 citations Open access
Semantic Scholar
Spontaneous Behaviors and Wall-Curvature Lead to Apparent Wall Preference in Planarian
Yoshitaro Akiyama, K. Agata, Takeshi Inoue
2015PLoS ONE18 citations Open access
Semantic Scholar
Reintegration of the regenerated and the remaining tissues during joint regeneration in the newt Cynops pyrrhogaster
Rio Tsutsumi, Takeshi Inoue, S. Yamada, K. Agata
2015Regeneration18 citations Open access
Semantic Scholar
Calcium ions in the aquatic environment drive planarians to food
M. Mori, Maria Narahashi, T. Hayashi, Miyuki Ishida +5 more
2019Zoological Letters16 citations Open access
Semantic Scholar
Bidirectional promoters link cAMP signaling with irreversible differentiation through promoter-associated non-coding RNA (pancRNA) expression in PC12 cells
N. Yamamoto, K. Agata, K. Nakashima, Takuya Imamura
2016Nucleic Acids Research16 citations Open access
Semantic Scholar
Toll signalling promotes blastema cell proliferation during cricket leg regeneration via insect macrophages.
T. Bando, Misa Okumura, Y. Bando, Marou Hagiwara +8 more
2021Development15 citations Open access
Semantic Scholar
Multiple Neuropeptide-Coding Genes Involved in Planarian Pharynx Extension
Seira Shimoyama, Takeshi Inoue, Makoto Kashima, K. Agata
2016Zoological Science15 citations Open access
Semantic Scholar
Verification of chicken Nanog as an epiblast marker and identification of chicken PouV as Pou5f3 by newly raised antibodies
Shota Nakanoh, Naoyuki Fuse, Y. Takahashi, K. Agata
2015Development, Growth and Differentiation15 citations
Semantic Scholar
Molecular and cellular changes associated with the evolution of novel jaw muscles in parrots
Masayoshi Tokita, T. Nakayama, R. Schneider, K. Agata
2013Proceedings of the Royal Society of London. Biological Sciences15 citations Open access
Semantic Scholar
Lens regenerates by means of similar processes and timeline in adults and larvae of the newt Cynops pyrrhogaster
Takeshi Inoue, R. Inoue, Rio Tsutsumi, K. Tada +4 more
2012Developmental Dynamics15 citations
Semantic Scholar
Nanotechnology and Regenerative Medicine Control of Maintenance and Regeneration of Planarian Eyes by ovo
Samuel D. Cross, Adiv A. Johnson, Benjamin J. Gilles, Lori A. Bachman +4 more
201514 citations
Semantic Scholar
What is the role of PIWI family proteins in adult pluripotent stem cells? Insights from asexually reproducing animals, planarians
Makoto Kashima, K. Agata, N. Shibata
2020Development, Growth and Differentiation13 citations
Semantic Scholar
Coordination between binocular field and spontaneous self-motion specifies the efficiency of planarians’ photo-response orientation behavior
Yoshitaro Akiyama, K. Agata, Takeshi Inoue
2018Communications Biology13 citations Open access
Semantic Scholar
Dynamics of Dark-Fly Genome Under Environmental Selections
M. Izutsu, A. Toyoda, A. Fujiyama, K. Agata +1 more
2015G3: Genes, Genomes, Genetics13 citations Open access
Semantic Scholar
Analyzing pERK Activation During Planarian Regeneration.
S. Fraguas, Y. Umesono, K. Agata, F. Cebrià
2017Methods in molecular biology12 citations
Semantic Scholar
Heterogeneity of chromatoid bodies in adult pluripotent stem cells of planarian Dugesia japonica
Makoto Kashima, Nobuyoshi Kumagai, K. Agata, N. Shibata
2016Development, Growth and Differentiation12 citations
Semantic Scholar
Role of MEKK1 in the anterior‐posterior patterning during planarian regeneration
Kazutaka Hosoda, Minako Motoishi, Takuya Kunimoto, Osamu Nishimura +6 more
2018Development, Growth and Differentiation11 citations Open access
Semantic Scholar
Comparison of the Chromosome Structures between the Chicken and Three Anserid Species, the Domestic Duck (Anas platyrhynchos), Muscovy Duck (Cairina moschata), and Chinese Goose (Anser cygnoides), and the Delineation of their Karyotype Evolution by Comparative Chromosome Mapping
Fhamida B. Islam, Yoshinobu Uno, Mitsuo Nunome, Osamu Nishimura +3 more
201411 citations Open access
Semantic Scholar
Quantification of planarian behaviors
Takeshi Inoue, K. Agata
2021Development, Growth and Differentiation10 citations Open access
Semantic Scholar
JmjC Domain-Encoding Genes Are Conserved in Highly Regenerative Metazoans and Are Associated with Planarian Whole-Body Regeneration
Ping-Lin Cao, Nobuyoshi Kumagai, Takeshi Inoue, K. Agata +1 more
2019Genome Biology and Evolution10 citations Open access
Semantic Scholar
Pharmacological assessment of methamphetamine-induced behavioral hyperactivity mediated by dopaminergic transmission in planarian Dugesia japonica.
Natsuka Tashiro, Kaneyasu Nishimura, Kanako Daido, Tomoe Oka +8 more
2014Biochemical and Biophysical Research Communications - BBRC10 citations
Semantic Scholar

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