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M. Vingron · SciRah

Researcher profile · Semantic Scholar

M. Vingron

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M. Vingron — researcher profile on SciRah

h-index: 78
Works: 400
Citations: 38K

Most-cited papers

Formation of new chromatin domains determines pathogenicity of genomic duplications
Martin Franke, Daniel M. Ibrahim, G. Andrey, Wibke Schwarzer +19 more
2016Nature622 citations Open access
Semantic Scholar
The Translational Landscape of the Human Heart.
S. van Heesch, Franziska Witte, Valentin Schneider-Lunitz, J. Schulz +52 more
2019Cell548 citations Open access
Semantic Scholar
SVIM: structural variant identification using mapped long reads
Davide Heller, M. Vingron
2018bioRxiv347 citations Open access
Semantic Scholar
Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors
J. George, Vonn Walter, M. Peifer, L. Alexandrov +58 more
2018Nature Communications342 citations Open access
Semantic Scholar
Haplotype-resolved sweet potato genome traces back its hexaploidization history
Jun Yang, M. Moeinzadeh, H. Kuhl, J. Helmuth +15 more
2017Nature Plants303 citations Open access
Semantic Scholar
Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
Alexandra Despang, R. Schöpflin, Martin Franke, Salaheddine Ali +8 more
2019Nature Genetics268 citations Open access
Semantic Scholar
Polymer physics predicts the effects of structural variants on chromatin architecture
Simona Bianco, D. Lupiáñez, A. Chiariello, Carlo Annunziatella +8 more
2018Nature Genetics202 citations Open access
Semantic Scholar
Dynamic 3D Chromatin Architecture Contributes to Enhancer Specificity and Limb Morphogenesis
Bjørt K. Kragesteen, M. Spielmann, C. Paliou, V. Heinrich +20 more
2018Nature Genetics178 citations Open access
Semantic Scholar
SVIM-asm: structural variant detection from haploid and diploid genome assemblies
Davide Heller, M. Vingron
2020bioRxiv175 citations Open access
Semantic Scholar
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
C. Paliou, Philine Guckelberger, R. Schöpflin, V. Heinrich +14 more
2019Proceedings of the National Academy of Sciences of the United States of America156 citations Open access
Semantic Scholar
Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
G. Andrey, R. Schöpflin, I. Jerković, V. Heinrich +7 more
2017Genome Research134 citations Open access
Semantic Scholar
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations
K. Kraft, Andreas Magg, V. Heinrich, Christina Riemenschneider +10 more
2019Nature Cell Biology130 citations Open access
Semantic Scholar
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils
Luigi Grassi, F. Pourfarzad, S. Ullrich, A. Merkel +31 more
2018Cell Reports122 citations Open access
Semantic Scholar
Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases.
U. S. Melo, R. Schöpflin, Rocio Acuna-Hidalgo, M. Mensah +18 more
2020American Journal of Human Genetics111 citations Open access
Semantic Scholar
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency.
Kenjiro Adachi, W. Kopp, Guang-Ming Wu, S. Heising +7 more
2018Cell Stem Cell99 citations Open access
Semantic Scholar
Composition and dosage of a multipartite enhancer cluster control developmental expression of Indian hedgehog
Anja J. Will, Giulia Cova, M. Osterwalder, Wing-Lee Chan +9 more
2017Nature Genetics98 citations Open access
Semantic Scholar
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Damir Baranasic, Matthias Hörtenhuber, Piotr J. Balwierz, T. Zehnder +51 more
2022Nature Genetics79 citations Open access
Semantic Scholar
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells
D. Rosebrock, S. Arora, Naresh Mutukula, Rotem Volkman +9 more
2022Nature Cell Biology78 citations Open access
Semantic Scholar
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality
Francisca M. Real, S. Haas, P. Franchini, Peiwen Xiong +25 more
2020Science65 citations Open access
Semantic Scholar
Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation
M. Love, Matthew R. Huska, M. Jurk, R. Schöpflin +7 more
2016Nucleic Acids Research52 citations Open access
Semantic Scholar
Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance
Sabrina Grasse, M. Lienhard, S. Frese, M. Kerick +22 more
2018Genome Medicine47 citations Open access
Semantic Scholar
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes
A. Ringel, Quentin Szabo, A. Chiariello, Konrad Chudzik +25 more
2022Cell44 citations Open access
Semantic Scholar
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes
R. Schöpflin, U. S. Melo, Hossein Moeinzadeh, Davide Heller +27 more
2022Nature Communications43 citations Open access
Semantic Scholar
Conserved DNA sequence features underlie pervasive RNA polymerase pausing
Martyna Gajos, O. Jasnovidova, A. van Bömmel, S. Freier +2 more
2021Nucleic Acids Research43 citations Open access
Semantic Scholar
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks
Jan-Philipp Mallm, M. Iskar, Naveed Ishaque, Lara C. Klett +18 more
2019Molecular Systems Biology41 citations Open access
Semantic Scholar
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
Davide Heller, Ralf Krestel, U. Ohler, M. Vingron +1 more
2016bioRxiv37 citations Open access
Semantic Scholar
Reconstruction of gene networks using prior knowledge
Mahsa Ghanbari, Julia A. Lasserre, M. Vingron
2015BMC Systems Biology30 citations Open access
Semantic Scholar
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis
M. Lienhard, T. van den Beucken, B. Timmermann, Myriam Hochradel +4 more
2023Bioinform.29 citations Open access
Semantic Scholar
CRUP: a comprehensive framework to predict condition-specific regulatory units
Anna Ramisch, V. Heinrich, L. Glaser, Alisa Fuchs +22 more
2018Genome Biology29 citations Open access
Semantic Scholar
Ranbow: A fast and accurate method for polyploid haplotype reconstruction
M. Moeinzadeh, Jun Yang, E. Muzychenko, G. Gallone +4 more
2020PLoS Comput. Biol.28 citations Open access
Semantic Scholar
Effect of imputation on gene network reconstruction from single-cell RNA-seq data
Lam-Ha Ly, M. Vingron
2021bioRxiv26 citations Open access
Semantic Scholar
Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication
S. Kupke, Lam-Ha Ly, S. Börno, Alexander Ruff +4 more
2020Viruses26 citations Open access
Semantic Scholar
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise
Stefanie Schöne, M. Bothe, Edda Einfeldt, Marina Borschiwer +4 more
2018bioRxiv26 citations Open access
Semantic Scholar
Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads
Lenka Belicová, U. Repnik, Julien Delpierre, Elzbieta Gralinska +12 more
2021Journal of Cell Biology23 citations Open access
Semantic Scholar
Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts
Verena Thormann, Maika Rothkegel, R. Schöpflin, L. Glaser +6 more
2018Nucleic Acids Research23 citations Open access
Semantic Scholar
Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts
Verena Thormann, Maika Rothkegel, R. Schöpflin, L. Glaser +6 more
2018Nucleic Acids Research21 citations Open access
Semantic Scholar
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries
Svenja Mehringer, Enrico Seiler, F. Droop, Mitra Darvish +3 more
2022bioRxiv18 citations Open access
Semantic Scholar
A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion
Franziska Witte, Jorge Ruiz-Orera, Camilla Ciolli Mattioli, S. Blachut +15 more
2021Genome Biology18 citations Open access
Semantic Scholar
A MicroRNA Network Controls Legionella pneumophila Replication in Human Macrophages via LGALS8 and MX1
C. Herkt, Brian E. Caffrey, K. Surmann, Sascha Blankenburg +12 more
2020mBio18 citations Open access
Semantic Scholar
Time-Dependent Gene Network Modelling by Sequential Monte Carlo
S. Ancherbak, E. Kuruoğlu, M. Vingron
2016IEEE/ACM Transactions on Computational Biology & Bioinformatics18 citations Open access
Semantic Scholar
TADA—a machine learning tool for functional annotation-based prioritisation of pathogenic CNVs
J. Hertzberg, S. Mundlos, M. Vingron, G. Gallone
2022Genome Biology17 citations Open access
Semantic Scholar
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency.
Kenjiro Adachi, W. Kopp, Guang-Ming Wu, S. Heising +7 more
2018Cell Stem Cell17 citations Open access
Semantic Scholar
Visualizing cluster-specific genes from single-cell transcriptomics data using Association Plots.
Elzbieta Gralinska, Clemens Kohl, Bita Sokhandan Fadakar, M. Vingron
2022Journal of Molecular Biology15 citations Open access
Semantic Scholar
RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes
E. Enervald, L. M. Powell, L. Boteva, R. Foti +7 more
2021EMBO Journal15 citations Open access
Semantic Scholar
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq
L. Glaser, M. Steiger, Alisa Fuchs, A. van Bömmel +4 more
2021bioRxiv14 citations Open access
Semantic Scholar
Genome-wide Chromatin Profiling of Legionella pneumophila-Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2.
I. Du Bois, A. Marsico, W. Bertrams, M. Schweiger +6 more
2016Journal of Infectious Diseases14 citations Open access
Semantic Scholar
The haplotype-resolved genome sequence of hexaploid Ipomoea batatas reveals its evolutionary history
Jun Yang, M. Moeinzadeh, H. Kuhl, J. Helmuth +12 more
2016bioRxiv14 citations Open access
Semantic Scholar
Predicting enhancers in mammalian genomes using supervised hidden Markov models
T. Zehnder, Philipp Benner, M. Vingron
2019BMC Bioinformatics13 citations Open access
Semantic Scholar
The Distance Precision Matrix: computing networks from non-linear relationships
Mahsa Ghanbari, Julia A. Lasserre, M. Vingron
2016Bioinform.13 citations Open access
Semantic Scholar
SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing
Davide Heller, M. Vingron, G. Church, Heng Li +1 more
2020bioRxiv12 citations Open access
Semantic Scholar

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