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N. Leontis · SciRah

Researcher profile · Semantic Scholar

N. Leontis

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N. Leontis — researcher profile on SciRah

h-index: 45
Works: 138
Citations: 11K

Most-cited papers

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
Barry Smith, M. Ashburner, C. Rosse, J. Bard +14 more
2007Nature Biotechnology2,820 citations Open access
Semantic Scholar
Geometric nomenclature and classification of RNA base pairs.
N. Leontis, E. Westhof
2001RNA: A publication of the RNA Society1,075 citations Open access
Semantic Scholar
The non-Watson-Crick base pairs and their associated isostericity matrices.
N. Leontis, J. Stombaugh, E. Westhof
2002Nucleic Acids Research781 citations Open access
Semantic Scholar
The building blocks and motifs of RNA architecture.
N. Leontis, A. Lescoute, E. Westhof
2006Current Opinion in Structural Biology393 citations Open access
Semantic Scholar
Tools for the automatic identification and classification of RNA base pairs
Huanwang Yang, F. Jossinet, N. Leontis, Li Chen +3 more
2003Nucleic Acids Res.331 citations Open access
Semantic Scholar
FR3D: finding local and composite recurrent structural motifs in RNA 3D structures
Michael Sarver, Craig L. Zirbel, J. Stombaugh, A. Mokdad +1 more
2007Journal of Mathematical Biology303 citations Open access
Semantic Scholar
Analysis of RNA motifs.
N. Leontis, E. Westhof
2003Current Opinion in Structural Biology303 citations
Semantic Scholar
Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments
A. Lescoute, N. Leontis, C. Massire, E. Westhof
2005Nucleic Acids Research242 citations Open access
Semantic Scholar
TectoRNA: modular assembly units for the construction of RNA nano-objects.
Luc Jaeger, E. Westhof, N. Leontis
2001Nucleic Acids Research238 citations Open access
Semantic Scholar
Frequency and isostericity of RNA base pairs
J. Stombaugh, Craig L. Zirbel, E. Westhof, N. Leontis
2009Nucleic Acids Research214 citations Open access
Semantic Scholar
The Nucleic Acid Database: new features and capabilities
Buvaneswari Coimbatore Narayanan, J. Westbrook, Saheli Ghosh, Anton I. Petrov +4 more
2013Nucleic Acids Res.208 citations Open access
Semantic Scholar
Classification and energetics of the base-phosphate interactions in RNA
Craig L. Zirbel, Judit E. Šponer, J. Sponer, J. Stombaugh +1 more
2009Nucleic Acids Research163 citations Open access
Semantic Scholar
Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas
Anton I. Petrov, Craig L. Zirbel, N. Leontis
2013RNA: A publication of the RNA Society161 citations Open access
Semantic Scholar
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
J. A. Cruz, Marc-Frédérick Blanchet, Michal J. Boniecki, J. M. Bujnicki +29 more
2012RNA: A publication of the RNA Society155 citations Open access
Semantic Scholar
Nonredundant 3D Structure Datasets for RNA Knowledge Extraction and Benchmarking
N. Leontis, Craig L. Zirbel
2012143 citations
Semantic Scholar
RNAML: a standard syntax for exchanging RNA information.
Allison Waugh, P. Gendron, R. Altman, James W. Brown +8 more
2002RNA: A publication of the RNA Society119 citations Open access
Semantic Scholar
Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking
X. Zhong, Xiao-Rong Tao, J. Stombaugh, N. Leontis +1 more
2007EMBO Journal113 citations Open access
Semantic Scholar
Controlling RNA self-assembly to form filaments
Lorena Nasalean, S. Baudrey, N. Leontis, L. Jaeger
2006Nucleic Acids Research112 citations Open access
Semantic Scholar
Comprehensive survey and geometric classification of base triples in RNA structures
Amal S. Abu Almakarem, Anton I. Petrov, J. Stombaugh, Craig L. Zirbel +1 more
2011Nucleic Acids Research102 citations Open access
Semantic Scholar
Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.
K. Réblová, N. Špačková, R. Stefl, Kristina Csaszar +3 more
2003Biophysical Journal96 citations Open access
Semantic Scholar
Tertiary Structural and Functional Analyses of a Viroid RNA Motif by Isostericity Matrix and Mutagenesis Reveal Its Essential Role in Replication
X. Zhong, N. Leontis, Shui-Ming Qian, A. Itaya +3 more
2006Journal of Virology84 citations Open access
Semantic Scholar
Annotation of tertiary interactions in RNA structures reveals variations and correlations.
Yu-Rong Xin, Christian Laing, N. Leontis, T. Schlick
2008RNA: A publication of the RNA Society81 citations Open access
Semantic Scholar
The RNA Ontology Consortium: an open invitation to the RNA community.
N. Leontis, R. Altman, H. Berman, S. Brenner +11 more
2006RNA: A publication of the RNA Society79 citations Open access
Semantic Scholar
Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases.
F. Rázga, J. Koča, J. Šponer, N. Leontis
2005Biophysical Journal79 citations Open access
Semantic Scholar
A Three-Dimensional RNA Motif in Potato spindle tuber viroid Mediates Trafficking from Palisade Mesophyll to Spongy Mesophyll in Nicotiana benthamiana[W]
R. Takeda, Anton I. Petrov, N. Leontis, B. Ding
2011The Plant Cell73 citations Open access
Semantic Scholar
WebFR3D—a server for finding, aligning and analyzing recurrent RNA 3D motifs
Anton I. Petrov, Craig L. Zirbel, N. Leontis
2011Nucleic Acids Res.68 citations Open access
Semantic Scholar
Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
Kristina Csaszar, N. Špačková, R. Stefl, J. Šponer +1 more
2001Journal of Molecular Biology66 citations
Semantic Scholar
Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs.
J. Šponer, A. Mokdad, Judit E. Šponer, N. Špačková +2 more
2003Journal of Molecular Biology64 citations
Semantic Scholar
RNA nanotechnology for computer design and in vivo computation
Mei-Kang Qiu, Emil F. Khisamutdinov, Zhengyi Zhao, Cheryl Pan +3 more
2013Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences60 citations Open access
Semantic Scholar
R3D Align: global pairwise alignment of RNA 3D structures using local superpositions
Ryan R. Rahrig, N. Leontis, Craig L. Zirbel
2010Bioinform.59 citations Open access
Semantic Scholar
Quantum chemical studies of nucleic acids: Can we construct a bridge to the RNA structural biology and bioinformatics communities?
J. Šponer, Judit E. Šponer, Anton I. Petrov, N. Leontis
2010Journal of Physical Chemistry B58 citations Open access
Semantic Scholar
Structural and evolutionary classification of G/U wobble basepairs in the ribosome
A. Mokdad, Maryna V. Krasovska, J. Šponer, N. Leontis
2006Nucleic Acids Research56 citations Open access
Semantic Scholar
Ribosomal RNA Kink-turn Motif—A Flexible Molecular Hinge
F. Rázga, N. Špačková, K. Réblová, J. Koča +2 more
2004Journal of Biomolecular Structure and Dynamics55 citations
Semantic Scholar
Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.
K. Réblová, N. Špačková, J. Koča, N. Leontis +1 more
2004Biophysical Journal55 citations Open access
Semantic Scholar
The Annotation of RNA Motifs
N. Leontis, E. Westhof
2002Comparative and Functional Genomics50 citations Open access
Semantic Scholar
TokenRNA: A New Type of Sequence-Specific, Label-Free Fluorescent Biosensor for Folded RNA Molecules
K. Afonin, E. Danilov, I. Novikova, N. Leontis
2008ChemBioChem48 citations Open access
Semantic Scholar
Identifying novel sequence variants of RNA 3D motifs
Craig L. Zirbel, James Roll, B. Sweeney, Anton I. Petrov +2 more
2015Nucleic Acids Research46 citations Open access
Semantic Scholar
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Colin R. Batchelor, Thomas Bittner, K. Eilbeck, Christopher J. Mungall +6 more
200946 citations Open access
Semantic Scholar
The RNA 3D Motif Atlas: Computational Methods for Extraction, Organization and Evaluation of RNA Motifs
Lorena Parlea, B. Sweeney, Maryam Hosseini-Asanjan, Craig L. Zirbel +1 more
2016Methods45 citations Open access
Semantic Scholar
An introduction to recurrent nucleotide interactions in RNA
B. Sweeney, P. Roy, N. Leontis
2015Wiley Interdisciplinary Reviews - RNA39 citations
Semantic Scholar
The RNA structure alignment ontology.
James W. Brown, A. Birmingham, P. Griffiths, F. Jossinet +7 more
2009RNA: A publication of the RNA Society39 citations Open access
Semantic Scholar
Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome
Ivana Beššeová, K. Réblová, N. Leontis, J. Šponer
2010Nucleic Acids Research38 citations Open access
Semantic Scholar
A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana
Jian Wu, N. Leontis, Craig L. Zirbel, D. Bisaro +1 more
2019PLoS Pathogens37 citations Open access
Semantic Scholar
Sharing and archiving nucleic acid structure mapping data.
P. Rocca-Serra, Stanislav Bellaousov, A. Birmingham, Chun-Xia Chen +13 more
2011RNA: A publication of the RNA Society34 citations Open access
Semantic Scholar
Engineering cooperative tecto–RNA complexes having programmable stoichiometries
I. Novikova, Bachar H. Hassan, Marina G. Mirzoyan, N. Leontis
2010Nucleic Acids Research32 citations Open access
Semantic Scholar
Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules.
N. Leontis, J. Stombaugh, E. Westhof
2002Biochimie30 citations
Semantic Scholar
RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution
Ying Wang, Craig L. Zirbel, N. Leontis, B. Ding
2018PLoS Pathogens29 citations Open access
Semantic Scholar
RNA 3D Structural Motifs: Definition, Identification, Annotation, and Database Searching
Lorena Nasalean, J. Stombaugh, Craig L. Zirbel, N. Leontis
200927 citations
Semantic Scholar
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs
James Roll, Craig L. Zirbel, B. Sweeney, Anton I. Petrov +1 more
2016Nucleic Acids Res.25 citations Open access
Semantic Scholar
Noncanonical hydrogen bonding in nucleic acids. Benchmark evaluation of key base-phosphate interactions in folded RNA molecules using quantum-chemical calculations and molecular dynamics simulations.
Marie Zgarbová, P. Jurečka, P. Banáš, M. Otyepka +4 more
2011Journal of Physical Chemistry A25 citations Open access
Semantic Scholar

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Craig L. Zirbel×18
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Craig L. Zirbel — researcher profile on SciRah
E. Westhof×12
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J. Stombaugh×11
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J. Šponer×10
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Anton I. Petrov

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K. Réblová×4

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F. Jossinet — researcher profile on SciRah