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J. Westbrook · SciRah

Researcher profile · Semantic Scholar

J. Westbrook

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J. Westbrook — researcher profile on SciRah

h-index: 59
Works: 211
Citations: 55K

Most-cited papers

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
S. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich +34 more
2020Nucleic Acids Res.1,388 citations Open access
Semantic Scholar
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
S. Burley, H. Berman, Charmi Bhikadiya, Chunxiao Bi +36 more
2018Nucleic Acids Res.1,135 citations Open access
Semantic Scholar
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
Peter W. Rose, A. Prlić, Ali Altunkaya, Chunxiao Bi +25 more
2016Nucleic Acids Res.1,070 citations Open access
Semantic Scholar
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
S. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich +37 more
2022Nucleic Acids Res.777 citations Open access
Semantic Scholar
The RCSB Protein Data Bank: redesigned web site and web services
Peter W. Rose, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm +11 more
2010Nucleic Acids Res.671 citations Open access
Semantic Scholar
The RCSB Protein Data Bank: new resources for research and education
Peter W. Rose, Chunxiao Bi, Wolfgang Bluhm, Cole H. Christie +13 more
2012Nucleic Acids Res.539 citations Open access
Semantic Scholar
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
Peter W. Rose, A. Prlić, Chunxiao Bi, Wolfgang Bluhm +11 more
2014Nucleic Acids Res.515 citations Open access
Semantic Scholar
Outcome of the First Electron Microscopy Validation Task Force Meeting
R. Henderson, A. Sali, M. Baker, B. Carragher +24 more
2012Structure508 citations Open access
Semantic Scholar
RCSB Protein Data Bank: Enabling biomedical research and drug discovery
D. Goodsell, C. Zardecki, L. D. Di Costanzo, Jose M. Duarte +8 more
2019Protein Science314 citations Open access
Semantic Scholar
EMDataBank unified data resource for 3DEM
C. Lawson, A. Patwardhan, M. Baker, C. Hryc +10 more
2013Nucleic Acids Res.281 citations Open access
Semantic Scholar
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
S. Burley, H. Berman, Cole H. Christie, Jose M. Duarte +4 more
2017Protein Science270 citations Open access
Semantic Scholar
Validation of Structures in the Protein Data Bank
S. Gore, E. Sanz-García, P. Hendrickx, A. Gutmanas +30 more
2017Structure242 citations Open access
Semantic Scholar
RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive
Yana Rose, Jose M. Duarte, Robert Lowe, J. Segura +7 more
2020Journal of Molecular Biology213 citations Open access
Semantic Scholar
The Nucleic Acid Database: new features and capabilities
Buvaneswari Coimbatore Narayanan, J. Westbrook, Saheli Ghosh, Anton I. Petrov +4 more
2013Nucleic Acids Res.208 citations Open access
Semantic Scholar
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D
S. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich +31 more
2021Protein Science189 citations Open access
Semantic Scholar
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop
A. Sali, H. Berman, T. Schwede, J. Trewhella +34 more
2015Structure176 citations Open access
Semantic Scholar
The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank
J. Westbrook, C. Shao, Zu-Kang Feng, M. Zhuravleva +2 more
2015Bioinform.175 citations Open access
Semantic Scholar
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive
Jasmine Y. Young, J. Westbrook, Zu-Kang Feng, Raul Sala +45 more
2017Structure136 citations Open access
Semantic Scholar
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
S. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich +37 more
2022Protein Science113 citations Open access
Semantic Scholar
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students
S. Burley, H. Berman, Jose M. Duarte, Zu-Kang Feng +14 more
2022Biomolecules112 citations Open access
Semantic Scholar
Development of a prototype system for archiving integrative/hybrid structure models of biological macromolecules
Brinda K. Vallat, Ben M. Webb, J. Westbrook, A. Sali +1 more
2018Structure90 citations Open access
Semantic Scholar
Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.
J. Trewhella, W. Hendrickson, G. Kleywegt, A. Sali +6 more
2013Structure81 citations Open access
Semantic Scholar
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods
M. Gabanyi, P. Adams, Konstantin Arnold, L. Bordoli +14 more
2011Journal of Structural and Functional Genomics78 citations Open access
Semantic Scholar
How Structural Biologists and the Protein Data Bank Contributed to Recent US FDA New Drug Approvals
J. Westbrook, S. Burley
2018Structure74 citations Open access
Semantic Scholar
RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances
Sebastian Bittrich, Charmi Bhikadiya, Chunxiao Bi, Henry Chao +13 more
2023Journal of Molecular Biology73 citations Open access
Semantic Scholar
PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology
J. Westbrook, Jasmine Y. Young, C. Shao, Zu-Kang Feng +18 more
2022Journal of Molecular Biology71 citations Open access
Semantic Scholar
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB
Sebastian Bittrich, Yana Rose, J. Segura, Robert Lowe +3 more
2021Bioinform.65 citations Open access
Semantic Scholar
Outcome of the first wwPDB/CCDC/D3R Ligand Validation Workshop
P. Adams, K. Aertgeerts, C. Bauer, J. Bell +53 more
2016Structure60 citations Open access
Semantic Scholar
Transition Services for Youth With Autism
J. Westbrook, C. Fong, C. Nye, Ann Williams +2 more
201555 citations
Semantic Scholar
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
Jasmine Y. Young, J. Westbrook, Zu-Kang Feng, E. Peisach +47 more
2018Database J. Biol. Databases Curation52 citations Open access
Semantic Scholar
NMR Exchange Format: a unified and open standard for representation of NMR restraint data
A. Gutmanas, P. Adams, B. Bardiaux, H. Berman +21 more
2015Nature Structural &Molecular Biology51 citations Open access
Semantic Scholar
Adult Employment Assistance Services for Persons with Autism Spectrum Disorders: Effects on Employment Outcomes. Campbell Systematic Reviews, vol. 5, Oslo, Norway: The Campbell Collaboration
J. Westbrook, C. Nye, C. Fong, Judith T. Wan +2 more
201251 citations Open access
Semantic Scholar
Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
P. Adams, P. Afonine, Kumaran Baskaran, H. Berman +31 more
2019Acta Crystallographica Section D: Structural Biology50 citations Open access
Semantic Scholar
Data management challenges in three-dimensional EM
A. Patwardhan, J. Carazo, B. Carragher, R. Henderson +18 more
2012Nature Structural &Molecular Biology50 citations Open access
Semantic Scholar
FEDERATING STRUCTURAL MODELS AND DATA: OUTCOMES FROM A WORKSHOP ON ARCHIVING INTEGRATIVE STRUCTURES
H. Berman, P. Adams, Alexandre Bonvin, S. Burley +34 more
2019Structure43 citations Open access
Semantic Scholar
Crystallography and Databases
Ian J. Bruno, S. Gražulis, J. Helliwell, Soorya N. Kabekkodu +2 more
2017Data Science Journal37 citations Open access
Semantic Scholar
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
S. Dutta, D. Dimitropoulos, Zu-Kang Feng, Irina Persikova +7 more
2014Biopolymers34 citations Open access
Semantic Scholar
Multivariate Analyses of Quality Metrics for Crystal Structures in the Protein Data Bank Archive
C. Shao, Huanwang Yang, J. Westbrook, Jasmine Y. Young +2 more
2017Structure33 citations Open access
Semantic Scholar
RCSB Protein Data Bank 1D tools and services
J. Segura, Yana Rose, J. Westbrook, S. Burley +1 more
2020Bioinform.31 citations Open access
Semantic Scholar
Enhanced Validation of Small-Molecule Ligands and Carbohydrates in the Protein Data Bank
Zu-Kang Feng, J. Westbrook, Raul Sala, O. Smart +10 more
2021Structure29 citations Open access
Semantic Scholar
Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future
S. Burley, H. Berman, Wah Chiu, W. Dai +12 more
2022Biophysical Reviews27 citations Open access
Semantic Scholar
Modernized Uniform Representation of Carbohydrate Molecules in theProtein Data Bank.
C. Shao, Zu-Kang Feng, J. Westbrook, E. Peisach +6 more
2021Glycobiology25 citations Open access
Semantic Scholar
New system for archiving integrative structures
Brinda K. Vallat, Ben M. Webb, M. Fayazi, Serban Voinea +7 more
2021Acta Crystallographica Section D: Structural Biology24 citations Open access
Semantic Scholar
Community recommendations on cryoEM data archiving and validation
G. Kleywegt, P. Adams, S. J. Butcher, Catherine L. Lawson +43 more
2023IUCrJ21 citations Open access
Semantic Scholar
Simplified Quality Assessment for Small-molecule Ligands in the Protein Data Bank
C. Shao, J. Westbrook, Changpeng Lu, Charmi Bhikadiya +8 more
2022Structure21 citations Open access
Semantic Scholar
Impact of the Protein Data Bank on antineoplastic approvals
J. Westbrook, R. Soskind, B. Hudson, S. Burley
2020Drug Discovery Today21 citations Open access
Semantic Scholar
Archiving and disseminating integrative structure models
Brinda K. Vallat, Ben M. Webb, J. Westbrook, A. Sali +1 more
2019Journal of Biomolecular NMR20 citations Open access
Semantic Scholar
ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models
Brinda K. Vallat, G. Tauriello, S. Bienert, J. Haas +21 more
2022bioRxiv19 citations Open access
Semantic Scholar
Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic
Joseph H. Lubin, C. Zardecki, Elliott M. Dolan, Changpeng Lu +60 more
2020bioRxiv19 citations Open access
Semantic Scholar
Impact of the Protein Data Bank Across Scientific Disciplines
Zu-Kang Feng, Natalie Verdiguel, L. D. Di Costanzo, D. Goodsell +3 more
2020Data Science Journal19 citations Open access
Semantic Scholar

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