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D. Cociorva · SciRah

Researcher profile · Semantic Scholar

D. Cociorva

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D. Cociorva — researcher profile on SciRah

h-index: 24
Works: 50
Citations: 3,540

Most-cited papers

The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions.
P. Denny, F. K. Hagen, M. Hardt, L. Liao +48 more
2008Journal of Proteome Research444 citations Open access
Semantic Scholar
Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book
R. Sadygov, D. Cociorva, John R. Iii Yates
2004Nature Methods409 citations
Semantic Scholar
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.
W. McDonald, D. Tabb, R. Sadygov, M. MacCoss +5 more
2004Rapid Communications in Mass Spectrometry342 citations
Semantic Scholar
Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans
M. Dong, J. Venable, Nora Au, Tao Xu +5 more
2007Science323 citations
Semantic Scholar
Validation of Tandem Mass Spectrometry Database Search Results Using DTASelect
D. Cociorva, David L. Tabb, J. Yates
2006Current Protocols in Bioinformatics244 citations
Semantic Scholar
Optimization of mass spectrometry-compatible surfactants for shotgun proteomics.
Emily I. Chen, D. Cociorva, J. L. Norris, J. Yates
2007Journal of Proteome Research217 citations Open access
Semantic Scholar
Synthesis of High-Performance Parallel Programs for a Class of ab Initio Quantum Chemistry Models
Gerald Baumgartner, A. Auer, D. Bernholdt, Alina Bibireata +14 more
2005Proceedings of the IEEE199 citations Open access
Semantic Scholar
Performance of a linear ion trap-Orbitrap hybrid for peptide analysis.
J. Yates, D. Cociorva, L. Liao, V. Zabrouskov
2006Analytical Chemistry178 citations
Semantic Scholar
Automatic code generation for many-body electronic structure methods: the tensor contraction engine
A. Auer, Gerald Baumgartner, D. Bernholdt, Alina Bibireata +13 more
2006125 citations Open access
Semantic Scholar
Search Engine Processor: filtering and organizing PSMs
Paulo C. Carvalho, Juliana S. G. Fischer, Tao Xu, D. Cociorva +5 more
2012Proteomics121 citations Open access
Semantic Scholar
Bioinformatics Applications Note Sequence Analysis Xdia: Improving on the Label-free Data-independent Analysis
Paulo C. Carvalho, Xue-Mei Han, Tao Xu, D. Cociorva +5 more
109 citations
Semantic Scholar
YADA: a tool for taking the most out of high-resolution spectra
Paulo C. Carvalho, Tao Xu, Xue-Mei Han, D. Cociorva +2 more
2009Bioinform.83 citations Open access
Semantic Scholar
A High-Level Approach to Synthesis of High-Performance Codes for Quantum Chemistry
Gerald Baumgartner, D. Bernholdt, D. Cociorva, R. Harrison +6 more
2002International Conference on Software Composition60 citations
Semantic Scholar
Space-time trade-off optimization for a class of electronic structure calculations
D. Cociorva, Gerald Baumgartner, Chi-Chung Lam, P. Sadayappan +4 more
2002ACM-SIGPLAN Symposium on Programming Language Design and Implementation60 citations Open access
Semantic Scholar
Motif-specific sampling of phosphoproteomes.
C. Ruse, Daniel B. McClatchy, B. Lu, D. Cociorva +3 more
2008Journal of Proteome Research59 citations Open access
Semantic Scholar
Memory-optimal evaluation of expression trees involving large objects
Chi-Chung Lam, T. Rauber, Gerald Baumgartner, D. Cociorva +1 more
1999Computer languages, systems & structures50 citations Open access
Semantic Scholar
Towards Automatic Synthesis of High-Performance Codes for Electronic Structure Calculations: Data Locality Optimization
D. Cociorva, J. Wilkins, Gerald Baumgartner, P. Sadayappan +4 more
2001International Conference on High Performance Computing46 citations Open access
Semantic Scholar
Toward Objective Evaluation Of Proteomic Algorithms
J. Yates, S. K. Park, C. Delahunty, Tao Xu +3 more
2012Nature Methods44 citations Open access
Semantic Scholar
Can the false-discovery rate be misleading?
Rodrigo Barboza, D. Cociorva, Tao Xu, V. C. Barbosa +5 more
2011Proteomics44 citations Open access
Semantic Scholar
Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway.
Greg T. Cantin, J. Venable, D. Cociorva, J. Yates
2006Journal of Proteome Research43 citations Open access
Semantic Scholar
Loop optimization for a class of memory-constrained computations
D. Cociorva, J. Wilkins, Chi-Chung Lam, Gerald Baumgartner +2 more
2001International Conference on Supercomputing43 citations
Semantic Scholar
Comparison of Different Signal Thresholds on Data Dependent Sampling in Orbitrap and LTQ Mass Spectrometry for the Identification of Peptides and Proteins in Complex Mixtures
Catherine C. L. Wong, D. Cociorva, J. Venable, Tao Xu +1 more
2009Journal of the American Society for Mass Spectrometry42 citations Open access
Semantic Scholar
Quasiparticle calculations of band offsets at AlN–GaN interfaces
D. Cociorva, W. Aulbur, J. Wilkins
200230 citations Open access
Semantic Scholar
Global communication optimization for tensor contraction expressions under memory constraints
D. Cociorva, X. Gao, S. Krishnan, Gerald Baumgartner +3 more
2003Proceedings International Parallel and Distributed Processing Symposium29 citations
Semantic Scholar
Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra.
J. Venable, Tao Xu, D. Cociorva, J. Yates
2006Analytical Chemistry22 citations
Semantic Scholar
Data Locality Optimization for Synthesis of Efficient Out-of-Core Algorithms
S. Krishnan, S. Krishnamoorthy, Gerald Baumgartner, D. Cociorva +5 more
2003International Conference on High Performance Computing22 citations
Semantic Scholar
Optimization of Memory Usage Requirement for a Class of Loops Implementing Multi-dimensional Integrals
Chi-Chung Lam, D. Cociorva, Gerald Baumgartner, P. Sadayappan
1999International Workshop on Languages and Compilers for Parallel Computing21 citations Open access
Semantic Scholar
Memory-Constrained Data Locality Optimization for Tensor Contractions
Alina Bibireata, S. Krishnan, Gerald Baumgartner, D. Cociorva +5 more
2003International Workshop on Languages and Compilers for Parallel Computing19 citations
Semantic Scholar
Optimization of Memory Usage and Communication Requirements for a Class of Loops Implementing Multi-Dimensiona l Integrals
Chi-Chung Lam, D. Cociorva, J. Baumgartner, P. Sadayappan
199918 citations
Semantic Scholar
Proteomics of Pyrococcus Furiosus(Pfu): Identification of Extracted Proteins by Three Independent Methods
Catherine C. L. Wong, D. Cociorva, C. Miller, A. Schmidt +3 more
2013Journal of Proteome Research17 citations Open access
Semantic Scholar
Charge Prediction Machine: A tool for inferring precursor charge states of Electron Transfer Dissociation tandem mass spectra
Paulo C. Carvalho, D. Cociorva, Catherine C. L. Wong, M. da Glória da Costa Carvalho +2 more
2009Analytical Chemistry16 citations Open access
Semantic Scholar
A Performance Optimization Framework for Compilation of Tensor Contraction Expressions into Parallel Programs
Gerald Baumgartner, D. Bernholdt, D. Cociorva, Chi-Chung Lam +4 more
2002IEEE International Parallel and Distributed Processing Symposium14 citations
Semantic Scholar
Memory-Constrained Communication Minimization for a Class of Array Computations
D. Cociorva, Gerald Baumgartner, Chi-Chung Lam, P. Sadayappan +1 more
2002International Workshop on Languages and Compilers for Parallel Computing12 citations
Semantic Scholar
Zalunfiban at First Medical Contact for ST-Elevation Myocardial Infarction
A. V. van'T Hof, C. M. Gibson, S. Rikken, J. Januzzi +42 more
2025NEJM Evidence11 citations Open access
Semantic Scholar
Performance Optimization of a Class of Loops Involving Sums of Products of Sparse Arrays
Chi-Chung Lam, P. Sadayappan, D. Cociorva, M. Alouani +1 more
1999PP9 citations
Semantic Scholar
On Efficient Out-of-core Matrix Transposition �
S. Krishnamoorthy, Gerald Baumgartner, D. Cociorva, Chi-Chung Lam +1 more
20038 citations
Semantic Scholar
Efficiency of polycrystalline solar panels in Romania, possibility of using renewable energy
M. Andreea, M. Viorel, Natalia Raischi Simona, C. Mihaela +1 more
20182 citations Open access
Semantic Scholar
EFFICIENCY OF POLYCRYSTALLINE PHOTOVOLTAIC PARKS IN ROMANIA Possibility of Using Renewable Energy by Mihaela
A. Mîţiu, M. Olteanu, N. Raischi, C. Balaceanu +1 more
20182 citations
Semantic Scholar
Electronic Structure Methods: The Tensor Contraction Engine ⁄
A. Auer, Gerald Baumgartner, D. Bernholdt, Alina Bibireata +12 more
20152 citations
Semantic Scholar
Determination the optimal tilt and azimuth angle of photovoltaic system for maximum energy in Bucharest region, Romania - Case Study
M. A. Mitiu, M. Olteanu, G. Déak, N. Raischi +1 more
2019E3S Web of Conferences1 citations Open access
Semantic Scholar
Emissions of pollutants and air quality in the area of influence of high voltage overhead electrical lines.
D. Cociorva
20171 citations Open access
Semantic Scholar
Compile-Time Optimizations for Tensor Contraction Expressions
Gerald Baumgartner, D. Cociorva, Chi-Chung Lam, P. Sadayappan
20031 citations
Semantic Scholar
A performance optimization framework for compilation of tensor contraction expressions into parallel
Gerald Baumgartner, D. Bernholdt, D. Cociorva, Robert W. Harrison +4 more
2002Proceedings 16th International Parallel and Distributed Processing Symposium1 citations
Semantic Scholar
Automatic Synthesis of High-Performance Codes for Quantum Chemistry Applications
Gerald Baumgartner, D. Cociorva, Chi-Chung Lam, M. Nooijen
20021 citations
Semantic Scholar
Memory-Optimal Evaluation of Expression Trees Involving Large Objects 1
Chi-Chung Lam, D. Cociorva, P. Sadayappan
20021 citations
Semantic Scholar
IDENTIFYING AND DESCRIBING THE MAIN CLIMATIC AND STRESS FACTORS THAT ARE AFFECTING FOREST AND VITICULTURAL ECOSYSTEMS
D. Vizitiu, L. Dincă, V. Enache, A. Donici +3 more
2018SIMI 20180 citations Open access
Semantic Scholar
Compiler Support for Optimizing Tensor Contraction Expressions in Quantum Chemistry Computations
Gerald Baumgartner, D. Cociorva, Chi-Chung Lam
20070 citations
Semantic Scholar
Loop Transformations for Parallel Execution of a Class of Nested Loops on Shared-Memory Multiprocessors
D. Cociorva, J. Wilkins, P. Sadayappan
20070 citations
Semantic Scholar
Quasi-particle optical signatures in silicon defects
T. Choy, D. Cociorva, Kim Jeongnim, Aulbur Wilfried +1 more
20040 citations
Semantic Scholar
Quasiparticle calculations for semiconductor interfaces and defects
D. Cociorva
20020 citations
Semantic Scholar

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