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C. Chan · SciRah

Researcher profile · Semantic Scholar

C. Chan

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C. Chan — researcher profile on SciRah

h-index: 38
Works: 134
Citations: 4,692

Most-cited papers

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants
Dana C. Price, C. Chan, Hwan Su Yoon, E. Yang +26 more
2012Science388 citations Open access
Semantic Scholar
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
S. Brawley, N. Blouin, E. Ficko-Blean, G. Wheeler +46 more
2017Proceedings of the National Academy of Sciences of the United States of America259 citations Open access
Semantic Scholar
A genomic view of the reef-building coral Porites lutea and its microbial symbionts
S. Robbins, C. Singleton, C. Chan, Lauren F. Messer +29 more
2019Nature Microbiology235 citations Open access
Semantic Scholar
Genome of the red alga Porphyridium purpureum
D. Bhattacharya, Dana C. Price, C. Chan, H. Qiu +13 more
2013Nature Communications233 citations Open access
Semantic Scholar
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
Huan-Le Liu, T. Stephens, Raúl A. González-Pech, V. Beltran +11 more
2018Communications Biology207 citations Open access
Semantic Scholar
Benchmarking of alignment-free sequence comparison methods
A. Zieleziński, Hani Z. Girgis, Guillaume Bernard, Chris-André Leimeister +15 more
2019Genome Biology206 citations Open access
Semantic Scholar
Next-generation phylogenomics
C. Chan, M. Ragan
2013Biology Direct155 citations Open access
Semantic Scholar
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
A. Mohamed, V. Cumbo, S. Harii, C. Shinzato +7 more
2016Molecular Ecology110 citations
Semantic Scholar
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium
Raúl A. González-Pech, T. Stephens, Yi-Bi Chen, A. Mohamed +9 more
2021BMC Biology95 citations Open access
Semantic Scholar
Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta
Jun-Mo Lee, E. Yang, L. Graf, Ji Hyun Yang +15 more
2018Molecular biology and evolution95 citations Open access
Semantic Scholar
Building consensus around the assessment and interpretation of Symbiodiniaceae diversity
S. W. Davies, Matthew H. Gamache, L. Howe-Kerr, N. Kriefall +57 more
2023PeerJ94 citations Open access
Semantic Scholar
A new species of Burkholderia isolated from sugarcane roots promotes plant growth
C. Paungfoo-Lonhienne, T. Lonhienne, Yun Kit Yeoh, R. Webb +6 more
2013Microbial Biotechnology94 citations Open access
Semantic Scholar
The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change
C. Voolstra, David J. Miller, M. Ragan, A. Hoffmann +22 more
2015Frontiers in Marine Science86 citations Open access
Semantic Scholar
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions
T. Stephens, Raúl A. González-Pech, Yuanyuan Cheng, Amin R. Mohamed +4 more
2020BMC Biology85 citations Open access
Semantic Scholar
The Algal Revolution.
J. Brodie, C. Chan, O. De Clerck, J. M. Cock +8 more
2017Trends in Plant Science81 citations
Semantic Scholar
Alignment-free inference of hierarchical and reticulate phylogenomic relationships
Guillaume Bernard, C. Chan, Yao-ban Chan, Xin-Yi Chua +4 more
2017Briefings Bioinform.75 citations Open access
Semantic Scholar
Inferring phylogenies of evolving sequences without multiple sequence alignment
C. Chan, Guillaume Bernard, Olivier B. Poirion, J. Hogan +1 more
2014Scientific Reports74 citations Open access
Semantic Scholar
Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids
Christopher J. Jackson, A. Knoll, C. Chan, H. Verbruggen
2018Scientific Reports73 citations Open access
Semantic Scholar
Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium
Cintia Iha, K. Dougan, J. Varela, Viridiana Avila +13 more
2020bioRxiv68 citations Open access
Semantic Scholar
Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism
C. Chan, N. Blouin, Yun-Yun Zhuang, Simone Zäuner +13 more
2012Journal of Phycology65 citations
Semantic Scholar
Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer
Guillaume Bernard, C. Chan, M. Ragan
2016Scientific Reports64 citations Open access
Semantic Scholar
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions
T. Stephens, M. Ragan, D. Bhattacharya, C. Chan
2018Scientific Reports52 citations Open access
Semantic Scholar
Genome Evolution of Coral Reef Symbionts as Intracellular Residents.
Raúl A. González-Pech, D. Bhattacharya, M. Ragan, C. Chan
2019Trends in Ecology & Evolution48 citations
Semantic Scholar
Deciphering the nature of the coral–Chromera association
A. Mohamed, V. Cumbo, S. Harii, C. Shinzato +5 more
2018The ISME Journal48 citations Open access
Semantic Scholar
Progress and future directions for seaweed holobiont research.
Mahasweta Saha, S. Dittami, C. Chan, J. Raina +17 more
2024New Phytologist46 citations Open access
Semantic Scholar
Analysis of an improved Cyanophora paradoxa genome assembly
Dana C. Price, U. Goodenough, Robyn Roth, Jae-Hyeok Lee +11 more
2019DNA Research45 citations Open access
Semantic Scholar
Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems1[C][W][OA]
C. Chan, Simone Zäuner, G. Wheeler, A. Grossman +12 more
2012Plant Physiology43 citations Open access
Semantic Scholar
Consensus Guidelines for Advancing Coral Holobiont Genome and Specimen Voucher Deposition
C. Voolstra, K. Quigley, S. W. Davies, J. Parkinson +23 more
2021Frontiers in Marine Science42 citations Open access
Semantic Scholar
Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes
Yi-Bi Chen, Raúl A. González-Pech, T. Stephens, D. Bhattacharya +1 more
2019Journal of Phycology42 citations Open access
Semantic Scholar
Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium
Raúl A. González-Pech, M. Ragan, C. Chan
2017Scientific Reports37 citations Open access
Semantic Scholar
k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank
Guillaume Bernard, P. Greenfield, M. Ragan, C. Chan
2017mSystems36 citations Open access
Semantic Scholar
Commonly misunderstood parameters of NCBI BLAST and important considerations for users
Raúl A. González-Pech, T. Stephens, C. Chan
2018Bioinform.35 citations
Semantic Scholar
Active Host Response to Algal Symbionts in the Sea Slug Elysia chlorotica
C. Chan, Pavel Vaysberg, Dana C. Price, K. Pelletreau +2 more
2018Molecular biology and evolution32 citations Open access
Semantic Scholar
Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes
Yi-Bi Chen, Sarah Shah, K. Dougan, M. V. van Oppen +2 more
2022bioRxiv30 citations Open access
Semantic Scholar
Multi-omics analysis reveals the molecular response to heat stress in a “red tide” dinoflagellate
K. Dougan, Zhi-Luo Deng, Lars Wöhlbrand, Carsten Reuse +21 more
2022bioRxiv29 citations Open access
Semantic Scholar
Biotic interactions as drivers of algal origin and evolution.
J. Brodie, S. Ball, F. Bouget, C. Chan +11 more
2017New Phytologist29 citations Open access
Semantic Scholar
Recapitulating phylogenies using k-mers: from trees to networks
Guillaume Bernard, M. Ragan, C. Chan
2016F1000Research27 citations Open access
Semantic Scholar
Whole-genome duplication in an algal symbiont serendipitously confers thermal tolerance to corals
K. Dougan, A. Bellantuono, Tim Kahlke, Raffaela M. Abbriano +8 more
2022bioRxiv26 citations Open access
Semantic Scholar
Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex
Sarah Shah, Yi-Bi Chen, D. Bhattacharya, C. Chan
2020Scientific Reports25 citations Open access
Semantic Scholar
Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaça Spirit Yeasts
A. Jacobus, T. Stephens, P. Youssef, Raúl A. González-Pech +7 more
2020bioRxiv25 citations Open access
Semantic Scholar
Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum
Jia Zhang, Z. Richards, Arne A. S. Adam, C. Chan +6 more
2022bioRxiv24 citations Open access
Semantic Scholar
Facultative lifestyle drives diversity of coral algal symbionts.
Debashish Bhattacharya, T. Stephens, E. Chille, L. F. Benites +1 more
2023Trends in Ecology & Evolution22 citations Open access
Semantic Scholar
MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA) 1
J. Stiller, J. Perry, Linda A. Rymarquis, M. Accerbi +9 more
2012Journal of Phycology21 citations
Semantic Scholar
Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts.
K. Dougan, Raúl A. González-Pech, T. Stephens, Sarah Shah +4 more
2022Trends in Microbiology20 citations Open access
Semantic Scholar
Whole-genome duplication in an algal symbiont bolsters coral heat tolerance
K. Dougan, A. Bellantuono, Tim Kahlke, Raffaela M. Abbriano +8 more
2024Science Advances17 citations Open access
Semantic Scholar
Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions
R. Lo, K. Dougan, Yi-Bi Chen, Sarah Shah +2 more
2022Frontiers in Plant Science15 citations Open access
Semantic Scholar
Tightly Constrained Genome Reduction and Relaxation of Purifying Selection during Secondary Plastid Endosymbiosis
Kavitha Uthanumallian, Cintia Iha, Sonja I. Repetti, C. Chan +3 more
2021bioRxiv15 citations Open access
Semantic Scholar
Whole-genome duplication in an algal symbiont bolsters coral heat tolerance
K. Dougan, A. Bellantuono, Tim Kahlke, Raffaela M. Abbriano +8 more
2023bioRxiv14 citations Open access
Semantic Scholar
Developing model systems for dinoflagellates in the post‐genomic era
Hisatake Ishida, U. John, Shauna A. Murray, D. Bhattacharya +1 more
2023Journal of Phycology14 citations Open access
Semantic Scholar
Micro-analytical and molecular approaches for understanding the distribution, biochemistry, and molecular biology of selenium in (hyperaccumulator) plants
Katherine Pinto Irish, M. Harvey, H. Harris, M. Aarts +3 more
2022Planta13 citations Open access
Semantic Scholar

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Raúl A. González-Pech

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