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J. Perdigão · SciRah

Researcher profile · Semantic Scholar

J. Perdigão

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J. Perdigão — researcher profile on SciRah

h-index: 29
Works: 88
Citations: 3,717

Most-cited papers

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
F. Coll, R. McNerney, J. Guerra-Assunção, J. Glynn +6 more
2014Nature Communications616 citations Open access
Semantic Scholar
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
F. Coll, R. McNerney, M. Preston, J. Guerra-Assunção +15 more
2015Genome Medicine404 citations Open access
Semantic Scholar
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
F. Coll, J. Phelan, G. Hill-Cawthorne, Mridul B. Nair +47 more
2018Nature Genetics327 citations Open access
Semantic Scholar
The burden of bacterial antimicrobial resistance in the WHO European region in 2019: a cross-country systematic analysis
T. Meštrović, Gisela Robles Aguilar, Lucien R. Swetschinski, Kevin S. Ikuta +74 more
2022Lancet Public Health312 citations Open access
Semantic Scholar
Contribution of Efflux to the Emergence of Isoniazid and Multidrug Resistance in Mycobacterium tuberculosis
D. Machado, I. Couto, J. Perdigão, L. Rodrigues +5 more
2012PLoS ONE227 citations Open access
Semantic Scholar
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation
O. Brynildsrud, C. Pepperell, P. Suffys, L. Grandjean +26 more
2018Science Advances150 citations Open access
Semantic Scholar
High-level resistance to isoniazid and ethionamide in multidrug-resistant Mycobacterium tuberculosis of the Lisboa family is associated with inhA double mutations.
D. Machado, J. Perdigão, J. Ramos, I. Couto +4 more
2013Journal of Antimicrobial Chemotherapy124 citations Open access
Semantic Scholar
PolyTB: A genomic variation map for Mycobacterium tuberculosis
F. Coll, M. Preston, J. Guerra-Assunção, Grant Hill-Cawthorn +12 more
2014Tuberculosis97 citations Open access
Semantic Scholar
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages
J. Phelan, F. Coll, I. Bergval, R. Anthony +26 more
2016BMC Genomics91 citations Open access
Semantic Scholar
Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis
B. Veigas, D. Machado, J. Perdigão, I. Portugal +3 more
2010Nanotechnology89 citations
Semantic Scholar
Ion Channel Blockers as Antimicrobial Agents, Efflux Inhibitors, and Enhancers of Macrophage Killing Activity against Drug Resistant Mycobacterium tuberculosis
D. Machado, David Pires, J. Perdigão, I. Couto +5 more
2016PLoS ONE81 citations Open access
Semantic Scholar
Interplay between Mutations and Efflux in Drug Resistant Clinical Isolates of Mycobacterium tuberculosis
D. Machado, T. Coelho, J. Perdigão, C. Pereira +8 more
2017Frontiers in Microbiology73 citations Open access
Semantic Scholar
Multidrug-Resistant Tuberculosis in Lisbon, Portugal: A Molecular Epidemiological Perspective
J. Perdigão, R. Macedo, Inês João, E. Fernandes +2 more
2008Microbial Drug Resistance71 citations
Semantic Scholar
Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains
Anton Spadar, J. Perdigão, S. Campino, T. Clark
2023Genome Medicine65 citations Open access
Semantic Scholar
Genetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid
Paula J. Gómez-González, J. Perdigão, Pedro Gomes, Z. M. Puyén +8 more
2021Scientific Reports65 citations Open access
Semantic Scholar
Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting
J. Perdigão, H. Silva, D. Machado, R. Macedo +12 more
2014BMC Genomics64 citations Open access
Semantic Scholar
Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance
Y. Oppong, J. Phelan, J. Perdigão, D. Machado +5 more
2019BMC Genomics58 citations Open access
Semantic Scholar
Genetic analysis of extensively drug-resistant Mycobacterium tuberculosis strains in Lisbon, Portugal.
J. Perdigão, R. Macedo, A.R. Malaquias, A. Ferreira +2 more
2010Journal of Antimicrobial Chemotherapy53 citations
Semantic Scholar
Contribution of efflux to colistin heteroresistance in a multidrug resistant Acinetobacter baumannii clinical isolate
D. Machado, J. Antunes, A. Simões, J. Perdigão +8 more
2018Journal of Medical Microbiology42 citations
Semantic Scholar
A Molecular Perspective on Colistin and Klebsiella pneumoniae: Mode of Action, Resistance Genetics, and Phenotypic Susceptibility
Rita Elias, A. Duarte, J. Perdigão
2021Diagnostics38 citations Open access
Semantic Scholar
Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance
Anton Spadar, J. Phelan, Rita Elias, Ana Modesto +14 more
2022Scientific Reports36 citations Open access
Semantic Scholar
Genetic characterisation of the ethambutol resistance-determining region in Mycobacterium tuberculosis: prevalence and significance of embB306 mutations.
J. Perdigão, R. Macedo, A. P. Ribeiro, L. Brum +1 more
2009International Journal of Antimicrobial Agents35 citations
Semantic Scholar
From multidrug-resistant to extensively drug-resistant tuberculosis in Lisbon, Portugal: the stepwise mode of resistance acquisition.
J. Perdigão, R. Macedo, Carla Silva, D. Machado +4 more
2013Journal of Antimicrobial Chemotherapy34 citations Open access
Semantic Scholar
Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae
Kara K. Tsang, Margaret M. C. Lam, R. Wick, K. Wyres +70 more
2024bioRxiv33 citations Open access
Semantic Scholar
Pluronic® F127 Hydrogel Containing Silver Nanoparticles in Skin Burn Regeneration: An Experimental Approach from Fundamental to Translational Research
P. Francisco, Mariana Neves Amaral, A. Neves, Tânia Ferreira-Gonçalves +8 more
2023Gels31 citations Open access
Semantic Scholar
Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d-Cycloserine Resistance
Y. Nakatani, Helen K. Opel-Reading, M. Merker, D. Machado +25 more
2017Antimicrobial Agents and Chemotherapy30 citations Open access
Semantic Scholar
GidB mutation as a phylogenetic marker for Q1 cluster Mycobacterium tuberculosis isolates and intermediate-level streptomycin resistance determinant in Lisbon, Portugal.
J. Perdigão, R. Macedo, D. Machado, C. Silva +4 more
2014Clinical Microbiology and Infection30 citations Open access
Semantic Scholar
Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital
J. Perdigão, A. Modesto, A. L. Pereira, O. Neto +15 more
2019Microbial Genomics29 citations Open access
Semantic Scholar
Efflux Activity Differentially Modulates the Levels of Isoniazid and Rifampicin Resistance among Multidrug Resistant and Monoresistant Mycobacterium tuberculosis Strains
D. Machado, J. Perdigão, I. Portugal, M. Pieroni +3 more
2018Antibiotics29 citations Open access
Semantic Scholar
Tuberculosis drug-resistance in Lisbon, Portugal: a 6-year overview.
J. Perdigão, R. Macedo, C. Silva, C. Pinto +3 more
2011Clinical Microbiology and Infection28 citations Open access
Semantic Scholar
Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries
J. Perdigão, Carla Silva, Jaciara Diniz, C. Pereira +34 more
2019Infection, Genetics and Evolution23 citations Open access
Semantic Scholar
An Update on Wastewater Multi-Resistant Bacteria: Identification of Clinical Pathogens Such as Escherichia coli O25b:H4-B2-ST131-Producing CTX-M-15 ESBL and KPC-3 Carbapenemase-Producing Klebsiella oxytoca
E. Mesquita, R. Ribeiro, Carla Silva, R. Alves +6 more
2021Microorganisms22 citations Open access
Semantic Scholar
Using genomics to understand the origin and dispersion of multidrug and extensively drug resistant tuberculosis in Portugal
J. Perdigão, Pedro Gomes, A. Miranda, F. Maltez +9 more
2020Scientific Reports22 citations Open access
Semantic Scholar
Genetic diversity, transmission dynamics and drug resistance of Mycobacterium tuberculosis in Angola
J. Perdigão, Sofía Clemente, J. Ramos, Pedro Masakidi +6 more
2017Scientific Reports22 citations Open access
Semantic Scholar
Genomic Epidemiology of Carbapenemase Producing Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella variicola KPC-3 Producing Strain
J. Perdigão, C. Caneiras, Rita Elias, Ana Modesto +7 more
2020Microorganisms20 citations Open access
Semantic Scholar
Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing
J. Perdigão, Carla Silva, F. Maltez, D. Machado +12 more
2020Emerging Microbes and Infections19 citations Open access
Semantic Scholar
Genetics and roadblocks of drug resistant tuberculosis.
J. Perdigão, I. Portugal
2019Infection, Genetics and Evolution19 citations
Semantic Scholar
A phylogenomic approach for the analysis of colistin resistance associated genes in Klebsiella pneumoniae, its mutational diversity and implications for phenotypic resistance.
Rita Elias, Anton Spadar, J. Phelan, J. Melo-Cristino +7 more
2022International Journal of Antimicrobial Agents15 citations Open access
Semantic Scholar
Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals
Anton Spadar, J. Perdigão, J. Phelan, James A Charleston +7 more
2021Scientific Reports15 citations Open access
Semantic Scholar
Klebsiella pneumoniae and Colistin Susceptibility Testing: Performance Evaluation for Broth Microdilution, Agar Dilution and Minimum Inhibitory Concentration Test Strips and Impact of the “Skipped Well” Phenomenon
Rita Elias, J. Melo-Cristino, L. Lito, Margarida Pinto +5 more
2021Diagnostics14 citations Open access
Semantic Scholar
Pre-Multidrug-Resistant Mycobacterium tuberculosis Beijing Strain Associated with Disseminated Tuberculosis in a Pet Dog
A. Botelho, J. Perdigão, Ana Canto, T. Albuquerque +4 more
2013Journal of Clinical Microbiology14 citations Open access
Semantic Scholar
Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil
M. D. da Conceição, E. C. Conceição, I. P. Furlaneto, S. D. da Silva +11 more
2020Scientific Reports13 citations Open access
Semantic Scholar
Multidrug-Resistant Mycobacterium tuberculosis of the Latin American Mediterranean Lineage, Wrongly Identified as Mycobacterium pinnipedii (Spoligotype International Type 863 [SIT863]), Causing Active Tuberculosis in South Brazil
E. R. Dalla Costa, S. E. G. Vasconcelos, L. Esteves, H. Gomes +12 more
2015Journal of Clinical Microbiology13 citations Open access
Semantic Scholar
Genomic epidemiology of Mycobacterium tuberculosis in Santa Catarina, Southern Brazil
Mirela Verza, M. Scheffer, R. Salvato, M. Schörner +9 more
2020Scientific Reports12 citations Open access
Semantic Scholar
First insights into circulating XDR and pre-XDR Mycobacterium tuberculosis in Southern Brazil.
R. Salvato, E. Costa, A. J. Reis, S. Schiefelbein +10 more
2019Infection, Genetics and Evolution12 citations Open access
Semantic Scholar
The Mycobacterium avium Complex: Genomics, Disease, and Beyond
S. Matos, I. Portugal, J. Perdigão
2025Microorganisms9 citations Open access
Semantic Scholar
Practical approach to detection and surveillance of emerging highly resistant Mycobacterium tuberculosis Beijing 1071-32-cluster
I. Mokrousov, A. Vyazovaya, V. Sinkov, A. Gerasimova +18 more
2021Scientific Reports9 citations Open access
Semantic Scholar
Tuberculosis caused by Mycobacterium pinnipedii in a wild South American sea lion Otaria flavescens stranded in southern Brazil.
Aryse Martins Melo, R. P. da Silva, A. von Groll, A. J. Reis +6 more
2019Diseases of Aquatic Organisms9 citations
Semantic Scholar
Beyond extensively drug-resistant tuberculosis in Lisbon, Portugal: a case of linezolid resistance acquisition presenting as an iliopsoas abscess.
J. Perdigão, F. Maltez, D. Machado, H. Silva +5 more
2016International Journal of Antimicrobial Agents9 citations
Semantic Scholar
Insight into pathogenomics and phylogeography of hypervirulent and highly-lethal Mycobacterium tuberculosis strain cluster
I. Mokrousov, A. Vyazovaya, E. Shitikov, M. Badleeva +22 more
2023BMC Infectious Diseases8 citations Open access
Semantic Scholar

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