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T. Derrien · SciRah

Researcher profile · Semantic Scholar

T. Derrien

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T. Derrien — researcher profile on SciRah

h-index: 29
Works: 87
Citations: 20K

Most-cited papers

Landscape of transcription in human cells
S. Djebali, Carrie A. Davis, A. Merkel, A. Dobin +81 more
2012Nature4,999 citations Open access
Semantic Scholar
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
T. Derrien, Rory Johnson, G. Bussotti, A. Tanzer +23 more
2012Genome Research4,883 citations Open access
Semantic Scholar
GENCODE: The reference human genome annotation for The ENCODE Project
J. Harrow, A. Frankish, J. Gonzalez, Electra Tapanari +37 more
2012Genome Research4,522 citations Open access
Semantic Scholar
Long non-coding RNAs with enhancer-like function in human
U. A. Ørom, T. Derrien, Malte Beringer, K. Gumireddy +8 more
2010Cell1,721 citations Open access
Semantic Scholar
Fast Computation and Applications of Genome Mappability
T. Derrien, J. Estellé, Santiago Marco Sola, D. Knowles +3 more
2012PLoS ONE512 citations Open access
Semantic Scholar
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Valentin Wucher, F. Legeai, B. Hédan, Guillaume Rizk +18 more
2017Nucleic Acids Research448 citations Open access
Semantic Scholar
Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping
A. Vaysse, A. Ratnakumar, T. Derrien, E. Axelsson +18 more
2011PLoS Genetics384 citations Open access
Semantic Scholar
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
T. Mathers, Yazhou Chen, G. Kaithakottil, F. Legeai +32 more
2017Genome Biology357 citations Open access
Semantic Scholar
[Long non-coding RNAs with enhancer-like function in human cells].
T. Derrien, R. Guigó
2011Medecine sciences : M/S263 citations Open access
Semantic Scholar
DNA materials: bridging nanotechnology and biotechnology.
Da-Yong Yang, M. Hartman, T. Derrien, S. Hamada +5 more
2014Accounts of Chemical Research245 citations
Semantic Scholar
Multi-species annotation of transcriptome and chromatin structure in domesticated animals
S. Foissac, S. Djebali, K. Munyard, Nathalie Vialaneix +32 more
2019BMC Biology125 citations Open access
Semantic Scholar
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Camille Sessegolo, C. Cruaud, C. da Silva, Audric Cologne +4 more
2019Scientific Reports105 citations Open access
Semantic Scholar
The Avian RNAseq Consortium: a community effort to annotate the chicken genome
Michael Schmid, Jacqueline Smith, D. Burt, B. Aken +100 more
2015Cytogenetic and Genome Research88 citations Open access
Semantic Scholar
Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.
Alexandre Cormier, K. Avia, L. Sterck, T. Derrien +11 more
2017New Phytologist84 citations Open access
Semantic Scholar
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping
C. Hitte, J. Madeoy, E. Kirkness, C. Priat +21 more
2005Nature reviews genetics84 citations
Semantic Scholar
The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates
Jonathan M. Mudge, A. Frankish, J. Fernandez-Banet, T. Alioto +6 more
2011Molecular biology and evolution78 citations Open access
Semantic Scholar
Long noncoding RNA repertoire in chicken liver and adipose tissue
Kévin Muret, C. Klopp, Valentin Wucher, D. Esquerré +11 more
2017Genetics Selection Evolution74 citations Open access
Semantic Scholar
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
C. Howald, A. Tanzer, J. Chrast, F. Kokocinski +13 more
2012Genome Research68 citations Open access
Semantic Scholar
AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
T. Derrien, C. André, F. Galibert, C. Hitte
2007Bioinform.64 citations Open access
Semantic Scholar
Dynamic DNA material with emergent locomotion behavior powered by artificial metabolism
S. Hamada, Kenneth G Yancey, Y. Pardo, Ming-Zhe Gan +8 more
2019Science Robotics54 citations Open access
Semantic Scholar
Crystallization of DNA-capped gold nanoparticles in high-concentration, divalent salt environments.
Shawn J. Tan, Jason S Kahn, T. Derrien, M. Campolongo +3 more
2014Angewandte Chemie54 citations
Semantic Scholar
Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes
J. Halo, Amanda L. Pendleton, Fei-Chen Shen, Aurélien J. Doucet +9 more
2020Proceedings of the National Academy of Sciences of the United States of America48 citations Open access
Semantic Scholar
DNA Microgels as a Platform for Cell-Free Protein Expression and Display.
Jason S Kahn, Roanna C. H. Ruiz, Swati Sureka, Songming Peng +3 more
2016Biomacromolecules47 citations
Semantic Scholar
Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids
J. Plassais, B. Vonholdt, H. Parker, Alberto Carmagnini +22 more
2022Current Biology44 citations Open access
Semantic Scholar
Identification of long non-coding RNAs in insects genomes.
F. Legeai, T. Derrien
2015Current Opinion in Insect Science44 citations
Semantic Scholar
Characterisation and functional predictions of canine long non-coding RNAs
C. le Béguec, Valentin Wucher, L. Lagoutte, É. Cadieu +7 more
2018Scientific Reports36 citations Open access
Semantic Scholar
Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes
B. Broeckx, C. Hitte, F. Coopman, G. Verhoeven +12 more
2015Scientific Reports36 citations Open access
Semantic Scholar
Coat colour in dogs: identification of the Merle locus in the Australian shepherd breed
B. Hédan, Sébastien Corre, C. Hitte, S. Dréano +6 more
2006BMC Veterinary Research36 citations Open access
Semantic Scholar
A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies
J. Plassais, L. Lagoutte, S. Correard, M. Paradis +17 more
2016PLoS Genetics34 citations Open access
Semantic Scholar
PTPN11 mutations in canine and human disseminated histiocytic sarcoma
B. Hédan, Mélanie Rault, J. Abadie, R. Ulvé +20 more
2020International Journal of Cancer29 citations Open access
Semantic Scholar
From cells to DNA materials
Songming Peng, T. Derrien, Jin-Hui Cui, Chuanying Xu +1 more
201229 citations Open access
Semantic Scholar
Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets
A. Prouteau, S. Mottier, Aline Primot, É. Cadieu +14 more
2021bioRxiv28 citations Open access
Semantic Scholar
Identification of common predisposing loci to hematopoietic cancers in four dog breeds
B. Hédan, É. Cadieu, M. Rimbault, A. Vaysse +7 more
2021PLoS Genetics28 citations Open access
Semantic Scholar
A comparative genome approach to marker ordering
T. Faraut, S. de Givry, P. Chabrier, T. Derrien +3 more
2007Bioinform.28 citations Open access
Semantic Scholar
Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma
A. Prouteau, J. Denis, P. de Fornel, É. Cadieu +13 more
2021Scientific Reports27 citations Open access
Semantic Scholar
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
Frédéric Jehl, Kévin Muret, M. Bernard, M. Boutin +13 more
2020Scientific Reports25 citations Open access
Semantic Scholar
Discovery of Human-Similar Gene Fusions in Canine Cancers.
R. Ulvé, Mélanie Rault, M. Bahin, L. Lagoutte +19 more
2017Cancer Research24 citations
Semantic Scholar
LncRNAs in domesticated animals: from dog to livestock species
S. Lagarrigue, Matthias Lorthiois, Fabien Degalez, David Gilot +1 more
2021Mammalian Genome22 citations Open access
Semantic Scholar
Identification of a Missense Variant in MFSD12 Involved in Dilution of Phaeomelanin Leading to White or Cream Coat Color in Dogs
B. Hédan, É. Cadieu, Nadine Botherel, Caroline Dufaure de Citres +8 more
2019Genes21 citations Open access
Semantic Scholar
Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas
C. Hitte, C. le Béguec, É. Cadieu, Valentin Wucher +7 more
2019Genes19 citations Open access
Semantic Scholar
Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
S. Djebali, Valentin Wucher, S. Foissac, C. Hitte +2 more
2017Methods in molecular biology19 citations
Semantic Scholar
Annotation of the domestic dog genome sequence: finding the missing genes
T. Derrien, A. Vaysse, C. André, C. Hitte
2011Mammalian Genome19 citations Open access
Semantic Scholar
Revisiting the missing protein-coding gene catalog of the domestic dog
T. Derrien, J. Thézé, A. Vaysse, C. André +3 more
2009BMC Genomics19 citations Open access
Semantic Scholar
Building comparative maps using 1.5x sequence coverage: human chromosome 1p and the canine genome.
R. Guyon, E. Kirkness, T. D. Lorentzen, C. Hitte +7 more
2003Cold Spring Harbor Symposia on Quantitative Biology17 citations
Semantic Scholar
Three-dimensional nanoparticle assemblies with tunable plasmonics via a layer-by-layer process
T. Derrien, S. Hamada, Max Zhou, D. Smilgies +1 more
2020Nano Today13 citations Open access
Semantic Scholar
Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma.
A. Prouteau, F. Chocteau, C. De Brito, É. Cadieu +12 more
2019Veterinary and Comparative Oncology13 citations Open access
Semantic Scholar
Structure and stimuli-responsiveness of all-DNA dendrimers: theory and experiment.
C. Jochum, N. Adžić, E. Stiakakis, T. Derrien +3 more
2018Nanoscale13 citations Open access
Semantic Scholar
Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig
S. Foissac, S. Djebali, K. Munyard, Nathalie Vialaneix +32 more
2018bioRxiv13 citations Open access
Semantic Scholar
An exome sequencing based approach for genome-wide association studies in the dog
B. Broeckx, T. Derrien, S. Mottier, Valentin Wucher +10 more
2017Scientific Reports11 citations Open access
Semantic Scholar
The GENCODE human gene set
S. Searle, A. Frankish, A. Bignell, B. Aken +30 more
2010Genome Biology10 citations Open access
Semantic Scholar

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