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S. Lakin · SciRah

Researcher profile · Semantic Scholar

S. Lakin

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S. Lakin — researcher profile on SciRah

h-index: 13
Works: 28
Citations: 1,369

Most-cited papers

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E. Doster, S. Lakin, C. Dean, Cory Wolfe +5 more
2019Nucleic Acids Res.396 citations Open access
Semantic Scholar
MEGARes: an antimicrobial resistance database for high throughput sequencing
S. Lakin, C. Dean, N. Noyes, A. Dettenwanger +9 more
2016Nucleic Acids Res.337 citations Open access
Semantic Scholar
West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses.
J. Fauver, Nathan D. Grubaugh, B. Krajacich, James Weger-Lucarelli +9 more
2016Virology124 citations Open access
Semantic Scholar
Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems
P. Rovira, T. McAllister, S. Lakin, S. Cook +10 more
2019Frontiers in Microbiology80 citations Open access
Semantic Scholar
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
N. Noyes, M. Weinroth, Jennifer K. Parker, C. Dean +11 more
2017Microbiome69 citations Open access
Semantic Scholar
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg.
Maite Ghazaleh Bucher, Benjamin Zwirzitz, A. Oladeinde, K. Cook +10 more
2020Journal of Environmental Quality50 citations Open access
Semantic Scholar
Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca
A. Oladeinde, K. Cook, S. Lakin, Reed Woyda +8 more
2019Applied and Environmental Microbiology48 citations Open access
Semantic Scholar
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period
E. Doster, P. Rovira, N. Noyes, B. Burgess +11 more
2018Frontiers in Microbiology48 citations Open access
Semantic Scholar
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
S. Lakin, A. Kuhnle, B. Alipanahi, N. Noyes +8 more
2019Communications Biology44 citations Open access
Semantic Scholar
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
R. Zaheer, S. Lakin, R. Polo, S. Cook +7 more
2019BMC Microbiology44 citations Open access
Semantic Scholar
Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics
K. L. Huebner, J. Martin, C. Weissend, Katlyn L. Holzer +11 more
2019Scientific Reports41 citations Open access
Semantic Scholar
Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens
A. Oladeinde, Z. Abdo, Benjamin Zwirzitz, Reed Woyda +14 more
2022Applied and Environmental Microbiology31 citations Open access
Semantic Scholar
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg
A. Oladeinde, Z. Abdo, M. Press, K. Cook +23 more
2021mSystems24 citations Open access
Semantic Scholar
Whole Genome Sequencing Shows that African Swine Fever Virus Genotype IX Is Still Circulating in Domestic Pigs in All Regions of Uganda
Rodney Okwasiimire, J. F. Flint, Edrine B. Kayaga, S. Lakin +7 more
2023Pathogens11 citations Open access
Semantic Scholar
Demographic and histopathologic features of dogs with abnormally high concentrations of hepatic copper
Tarini V. Ullal, S. Lakin, B. Gallagher, Nick Sbardellati +2 more
2022Journal of Veterinary Internal Medicine9 citations Open access
Semantic Scholar
Whole genome sequencing and molecular epidemiology of the 2021 African swine fever virus outbreak in the Dominican Republic.
S. Lakin, V. O'Donnell, Li-Zhe Xu, R. Barrette +5 more
2022Transboundary and Emerging Diseases5 citations Open access
Semantic Scholar
Domestic pigs are susceptible to experimental infection with non-human primate-derived Reston virus without the need for adaptation
Charles E Lewis, M. Pinette, S. Lakin, Greg Smith +4 more
2024Scientific Reports3 citations Open access
Semantic Scholar
Dynamics between horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca
A. Oladeinde, K. Cook, S. Lakin, Z. Abdo +7 more
2019bioRxiv3 citations Open access
Semantic Scholar
Tychus: a whole genome sequencing pipeline for assembly, annotation and phylogenetics of bacterial genomes
C. Dean, N. Noyes, S. Lakin, Pablo Rovira-Sanz +5 more
2018bioRxiv3 citations Open access
Semantic Scholar
Gene flux and acid-imposed selection are the main drivers of antimicrobial resistance in broiler chicks infected with Salmonella enterica serovar Heidelberg
A. Oladeinde, Z. Abdo, M. Press, K. Cook +23 more
2021bioRxiv2 citations Open access
Semantic Scholar
Competition is a determinant of multidrug resistant plasmid acquisition in Salmonella
A. Oladeinde, Z. Abdo, Benjamin Zwirzitz, Reed Woyda +12 more
2021bioRxiv1 citations Open access
Semantic Scholar
Complete Genome Sequences of Eight Streptococcus equi subsp. zooepidemicus Strains Isolated from Mares in Estrus with Endometritis
Grace I. Borlee, S. Lakin, Marylee L Kapuscinski, Z. Abdo +3 more
2021Microbiology Resource Announcements0 citations Open access
Semantic Scholar
Erratum for Oladeinde et al., “Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg”
A. Oladeinde, Z. Abdo, M. Press, K. Cook +23 more
2021mSystems0 citations Open access
Semantic Scholar
Fast Maximum Likelihood Estimation and Supervised Classification for the Beta-Liouville Multinomial
S. Lakin, Z. Abdo
2020arXiv.org0 citations
Semantic Scholar
Peer Review #1 of "Antimicrobial resistant gene prevalence in soils due to animal manure deposition and long-term pasture management (v0.3)"
Yi-Chao Yang, A. Ashworth, J. DeBruyn, L. Durso +241 more
20200 citations Open access
Semantic Scholar
Additional file 6: of Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
R. Zaheer, S. Lakin, R. Polo, S. Cook +7 more
20190 citations
Semantic Scholar
Peer Review #2 of "Staphylococcus aureus viewed from the perspective of 40,000+ genomes (v0.1)"
Robert A. Petit, Timothy D. Read, D. Antipov, N. Hartwick +364 more
20180 citations Open access
Semantic Scholar
Additional file 10: of Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
N. Noyes, M. Weinroth, Jennifer K. Parker, C. Dean +11 more
20170 citations
Semantic Scholar

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