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Luca Tubiana · SciRah

Researcher profile · Semantic Scholar

Luca Tubiana

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Luca Tubiana — researcher profile on SciRah

h-index: 15
Works: 44
Citations: 926

Most-cited papers

DNA–DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting
D. Marenduzzo, E. Orlandini, A. Stasiak, D. Sumners +2 more
2009Proceedings of the National Academy of Sciences of the United States of America199 citations Open access
Semantic Scholar
Probing the Entanglement and Locating Knots in Ring Polymers : A Comparative Study of Different Arc Closure Schemes(Statistical Physics and Topology of Polymers with Ramifications to Structure and Function of DNA and Proteins)
Luca Tubiana, E. Orlandini, C. Micheletti
201187 citations Open access
Semantic Scholar
Topology in soft and biological matter
Luca Tubiana, Gareth P. Alexander, Agnese Barbensi, D. Buck +55 more
2024Physics reports85 citations Open access
Semantic Scholar
Spontaneous knotting and unknotting of flexible linear polymers: equilibrium and kinetic aspects
Luca Tubiana, A. Rosa, Filippo Fragiacomo, C. Micheletti
201380 citations Open access
Semantic Scholar
KymoKnot: A web server and software package to identify and locate knots in trajectories of linear or circular polymers
Luca Tubiana, G. Polles, E. Orlandini, C. Micheletti
2018The European Physical Journal E : Soft matter72 citations Open access
Semantic Scholar
Multiscale entanglement in ring polymers under spherical confinement.
Luca Tubiana, E. Orlandini, C. Micheletti
2011Physical Review Letters57 citations Open access
Semantic Scholar
Structure and Dynamics of Ring Polymers: Entanglement Effects Because of Solution Density and Ring Topology
A. Rosa, E. Orlandini, Luca Tubiana, C. Micheletti
201153 citations Open access
Semantic Scholar
Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses.
Luca Tubiana, A. Božič, C. Micheletti, R. Podgornik
2014Biophysical Journal47 citations Open access
Semantic Scholar
Driving knots on DNA with AC/DC electric fields: topological friction and memory effects.
M. Di Stefano, Luca Tubiana, M. Di Ventra, C. Micheletti
2014Soft Matter36 citations
Semantic Scholar
Single-Molecule Structure and Topology of Kinetoplast DNA Networks
Pinyao He, A. Katan, Luca Tubiana, C. Dekker +1 more
2022bioRxiv25 citations Open access
Semantic Scholar
The role of directional interactions in the designability of generalized heteropolymers
C. Cardelli, V. Bianco, L. Rovigatti, Francesca Nerattini +3 more
2017Scientific Reports25 citations Open access
Semantic Scholar
Role of Bending Energy and Knot Chirality in Knot Distribution and Their Effective Interaction along Stretched Semiflexible Polymers
S. Najafi, R. Podgornik, R. Potestio, Luca Tubiana
2016Polymers20 citations Open access
Semantic Scholar
Circular Polycatenanes: Supramolecular Structures with Topologically Tunable Properties.
Luca Tubiana, Franco Ferrari, E. Orlandini
2021Physical Review Letters16 citations Open access
Semantic Scholar
Chirality modifies the interaction between knots
S. Najafi, Luca Tubiana, R. Podgornik, R. Potestio
201616 citations Open access
Semantic Scholar
Computational study on the progressive factorization of composite polymer knots into separated prime components.
Luca Tubiana
2014Physical review. E, Statistical, nonlinear, and soft matter physics15 citations Open access
Semantic Scholar
Heteropolymer Design and Folding of Arbitrary Topologies Reveals an Unexpected Role of Alphabet Size on the Knot Population
C. Cardelli, Luca Tubiana, V. Bianco, Francesca Nerattini +2 more
2018Macromolecules13 citations
Semantic Scholar
Comparing equilibration schemes of high-molecular-weight polymer melts with topological indicators
Luca Tubiana, H. Kobayashi, R. Potestio, B. Dünweg +3 more
2021Journal of Physics: Condensed Matter12 citations Open access
Semantic Scholar
General Methodology to Identify the Minimum Alphabet Size for Heteropolymer Design
C. Cardelli, Francesca Nerattini, Luca Tubiana, V. Bianco +3 more
2019Advanced Theory and Simulations11 citations
Semantic Scholar
Hydrodynamic of Active Liquid Crystals: A Hybrid Lattice Boltzmann Approach
Enzo Orlandini, M. E. Cates, D. Marenduzzo, Luca Tubiana +1 more
200810 citations
Semantic Scholar
Single-Molecule Morphology of Topologically Digested Olympic Networks
Saminathan Ramakrishnan, Zihao Chen, Y. G. Fosado, Luca Tubiana +4 more
2023bioRxiv9 citations Open access
Semantic Scholar
Scaling properties of RNA as a randomly branching polymer.
Domen Vaupotič, A. Rosa, Luca Tubiana, A. Božič
2023Journal of Chemical Physics9 citations Open access
Semantic Scholar
Compactness of viral genomes: effect of disperse and localized random mutations
A. Lošdorfer Božič, C. Micheletti, R. Podgornik, Luca Tubiana
2018Journal of Physics: Condensed Matter7 citations Open access
Semantic Scholar
Design of Protein-Protein Binding Sites Suggests a Rationale for Naturally Occurring Contact Areas.
Francesca Nerattini, Luca Tubiana, C. Cardelli, V. Bianco +2 more
2018Journal of Chemical Theory and Computation6 citations
Semantic Scholar
Protein design under competing conditions for the availability of amino acids
Francesca Nerattini, Luca Tubiana, C. Cardelli, V. Bianco +2 more
2020Scientific Reports5 citations Open access
Semantic Scholar
Discretized knot motion on a tensioned fiber induced by transverse waves.
R. Potestio, Luca Tubiana
2016Soft Matter4 citations Open access
Semantic Scholar
Organisation and dynamics of individual DNA segments in topologically complex genomes
Saminathan Ramakrishnan, Guglielmo Grillo, A. Patnaik, Luca Tubiana +1 more
2025Nucleic Acids Research3 citations Open access
Semantic Scholar
Thermal properties of knotted block copolymer rings with charged monomers subjected to short-range interactions.
Neda Abbasi Taklimi, Franco Ferrari, M. Piątek, Luca Tubiana
2023Physical Review E3 citations
Semantic Scholar
Dynamic and facilitated binding of topoisomerase accelerates topological relaxation
D. Michieletto, Y. G. Fosado, Elias Melas, M. Baiesi +2 more
2021bioRxiv3 citations Open access
Semantic Scholar
Viral RNA as a branched polymer
Domen Vaupotivc, A. Rosa, R. Podgornik, Luca Tubiana +1 more
20222 citations Open access
Semantic Scholar
Identification of Protein Functional Regions.
Francesca Nerattini, M. Figliuzzi, C. Cardelli, Luca Tubiana +3 more
2019ChemPhysChem2 citations Open access
Semantic Scholar
Implementing efficient concerted rotations using Mathematica and C code⋆
Luca Tubiana, Miroslav Jurásek, I. Coluzza
2018The European Physical Journal E : Soft matter2 citations Open access
Semantic Scholar
Universal criterion for designability of heteropolymers
C. Cardelli, V. Bianco, L. Rovigatti, Francesca Nerattini +3 more
20162 citations
Semantic Scholar
Emergent circulation patterns from anonymized mobility data: Clustering Italy in the time of Covid
Jules Morand, Shoichi Yip, Yannis Velegrakis, G. Lattanzi +2 more
2023arXiv.org1 citations Open access
Semantic Scholar
Author Correction: The role of directional interactions in the designability of generalized heteropolymers
C. Cardelli, V. Bianco, L. Rovigatti, Francesca Nerattini +3 more
2018Scientific Reports1 citations Open access
Semantic Scholar
A contact map method to capture the features of knot conformations
Neda Abbasi Taklimi, Franco Ferrari, M. Pikatek, Luca Tubiana
20240 citations
Semantic Scholar
Combining integrative polymer modeling and machine learning to model genome reorganization in cancer cells.
A.Y, Luca Tubiana
20230 citations
Semantic Scholar
On the thermal properties of knotted block copolymer rings
Neda Abbasi Taklimi, Franco A. Ferrari, M. Pikatek, Luca Tubiana
20220 citations
Semantic Scholar
Protein design under competition for amino acids availability
Francesca Nerattini, Luca Tubiana, C. Cardelli, V. Bianco +2 more
2018bioRxiv0 citations Open access
Semantic Scholar
Are Proteins Such Unique Polymers? - The Role of Directional Interactions in the Designability of Generalized Heteropolymers
C. Cardelli, V. Bianco, L. Rovigatti, Francesca Nerattini +3 more
20180 citations Open access
Semantic Scholar
Designing Selective Protein Binding Sites
Francesca Nerattini, Luca Tubiana, C. Cardelli, V. Bianco +2 more
20180 citations Open access
Semantic Scholar
A Multi-scale Approach to the Study of Protein Design, Folding and Aggregation
Francesca Nerattini, V. Bianco, C. Cardelli, Luca Tubiana +1 more
20180 citations Open access
Semantic Scholar
Soft Matter
Luca Tubiana, M. Di Ventra, C. Micheletti
20140 citations
Semantic Scholar
Multiscale Entanglement in Spherically Confined DNA Rings
Luca Tubiana, E. Orlandini, C. Micheletti
20120 citations Open access
Semantic Scholar
Simulations of Viral DNA Packaging and Ejection: Geometrical Order and Topological Disorder
D. Marenduzzo, E. Orlandini, A. Stasiak, D. Sumners +2 more
20110 citations Open access
Semantic Scholar

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