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B. Erman · SciRah

Researcher profile · Semantic Scholar

B. Erman

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B. Erman — researcher profile on SciRah

h-index: 39
Works: 347
Citations: 9,726

Most-cited papers

Reducing Virulence and Biofilm of Pseudomonas aeruginosa by Potential Quorum Sensing Inhibitor Carotenoid: Zeaxanthin
B. Gökalsın, B. Aksoydan, B. Erman, N. C. Sesal
2017Microbial Ecology82 citations
Semantic Scholar
Oncogenic G12D mutation alters local conformations and dynamics of K-Ras
Sezen Vatansever, B. Erman, Z. Gümüş
2017Scientific Reports74 citations Open access
Semantic Scholar
Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin
A. Hacisuleyman, B. Erman
2017PLoS Comput. Biol.71 citations Open access
Semantic Scholar
Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras
Sezen Vatansever, B. Erman, Z. Gümüş
2020bioRxiv56 citations Open access
Semantic Scholar
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues
Pemra Ozbek, Seren Soner, B. Erman, T. Haliloglu
2010Nucleic Acids Res.53 citations Open access
Semantic Scholar
Causality, Transfer Entropy and Allosteric Communication Landscapes in Proteins with Harmonic Interactions
A. Hacisuleyman, B. Erman
2016bioRxiv49 citations Open access
Semantic Scholar
Evidence of Strain Hardening in DNA Gels
Nermin Orakdogen, B. Erman, O. Okay
201043 citations
Semantic Scholar
Intrinsic K-Ras dynamics: A novel molecular dynamics data analysis method shows causality between residue pair motions
Sezen Vatansever, Z. Gümüş, B. Erman
2016Scientific Reports39 citations Open access
Semantic Scholar
Molecular dynamics simulations of site point mutations in the TPR domain of cyclophilin 40 identify conformational states with distinct dynamic and enzymatic properties
Mert Gur, E. Blackburn, J. Ning, V. Narayan +3 more
2018Journal of Chemical Physics31 citations Open access
Semantic Scholar
Molecular Recognition of H3/H4 Histone Tails by the Tudor Domains of JMJD2A: A Comparative Molecular Dynamics Simulations Study
Musa Ozboyaci, A. Gursoy, B. Erman, O. Keskin
2011PLoS ONE30 citations Open access
Semantic Scholar
VitAL: Viterbi Algorithm for de novo Peptide Design
E. B. Unal, A. Gursoy, B. Erman
2010PLoS ONE30 citations Open access
Semantic Scholar
Prediction of allosteric communication pathways in proteins
T. Haliloglu, A. Hacisuleyman, B. Erman
2022Bioinform.28 citations Open access
Semantic Scholar
Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins
T. Haliloglu, Ahmet Gul, B. Erman
2010PLoS Comput. Biol.28 citations Open access
Semantic Scholar
Relationships between ligand binding sites, protein architecture and correlated paths of energy and conformational fluctuations
B. Erman
2011Physical Biology23 citations Open access
Semantic Scholar
Identification of Ligand Binding Sites of Proteins Using the Gaussian Network Model
Ceren Tuzmen, B. Erman
2011PLoS ONE23 citations Open access
Semantic Scholar
A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase.
Ankita Naithani, P. Taylor, B. Erman, M. Walkinshaw
2015Biophysical Journal22 citations Open access
Semantic Scholar
Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth
B. Somuncu, A. Ekmekcioglu, Fatma Merve Antmen, Tugce Ertuzun +9 more
2022PLoS ONE21 citations Open access
Semantic Scholar
Cyclophilin40 isomerase activity is regulated by a temperature-dependent allosteric interaction with Hsp90
E. Blackburn, M. Wear, V. Landré, V. Narayan +4 more
2015Bioscience Reports17 citations Open access
Semantic Scholar
Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes
Yasemin Bozkurt, Alper Demir, B. Erman, A. Gül
2015Comput. Math. Methods Medicine17 citations Open access
Semantic Scholar
A fast approximate method of identifying paths of allosteric communication in proteins
B. Erman
2013Proteins: Structure, Function, and Bioinformatics16 citations
Semantic Scholar
Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein
Mert Golcuk, A. Hacisuleyman, B. Erman, A. Yildiz +1 more
2021bioRxiv15 citations Open access
Semantic Scholar
A Comparative Molecular Dynamics Study of Methylation State Specificity of JMJD2A
Ozlem Ulucan, O. Keskin, B. Erman, A. Gursoy
2011PLoS ONE14 citations Open access
Semantic Scholar
Dynamic correlations: exact and approximate methods for mutual information
K. Demirtaş, B. Erman, T. Haliloglu
2024Bioinform.13 citations Open access
Semantic Scholar
Molecular dynamics simulations provide molecular insights into the role of HLA‐B51 in Behçet's disease pathogenesis
Mert Gur, Mert Golcuk, A. Gul, B. Erman
2020Chemical Biology and Drug Design13 citations
Semantic Scholar
Synchronous and Asynchronous Response in Dynamically Perturbed Proteins
A. Erkip, A. Hacisuleyman, Batu Erman, B. Erman
2020bioRxiv12 citations Open access
Semantic Scholar
Subsets of Slow Dynamic Modes Reveal Global Information Sources as Allosteric Sites.
Bengi Altintel, Burçin Acar, B. Erman, T. Haliloglu
2022Journal of Molecular Biology11 citations
Semantic Scholar
Effects of ligand binding upon flexibility of proteins
B. Erman
2015Proteins: Structure, Function, and Bioinformatics11 citations Open access
Semantic Scholar
The Science and Technology of Rubber Fourth Edition
B. Erman
201311 citations
Semantic Scholar
ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity
A. Hacisuleyman, B. Erman
2020Journal of biological physics (Print)10 citations Open access
Semantic Scholar
Quasi-harmonic analysis of mode coupling in fluctuating native proteins
Mert Gur, B. Erman
2010Physical Biology10 citations
Semantic Scholar
Prediction of Optimal Folding Routes of Proteins That Satisfy the Principle of Lowest Entropy Loss: Dynamic Contact Maps and Optimal Control
Y. Arkun, B. Erman
2010PLoS ONE10 citations Open access
Semantic Scholar
Competitive hydrogen bonding in aspirin-aspirin and aspirin-leucine interactions
Zeynep Yurtsever, B. Erman, Ismail Yurtsever
2012Turkish journal of chemistry9 citations Open access
Semantic Scholar
Anharmonicity, mode-coupling and entropy in a fluctuating native protein
A. Kabakçıoğlu, Deniz Yuret, M. Gür, B. Erman
2010Physical Biology8 citations Open access
Semantic Scholar
Mutual information analysis of mutation, nonlinearity, and triple interactions in proteins
B. Erman
2022Proteins: Structure, Function, and Bioinformatics7 citations Open access
Semantic Scholar
Information flow and allosteric communication in proteins.
A. Hacisuleyman, B. Erman
2022Journal of Chemical Physics7 citations
Semantic Scholar
5‐Fluoro/(trifluoromethoxy)‐2‐indolinone derivatives with anti‐interleukin‐1 activity
Özge Soylu-Eter, Zekiye Şeyma Sevinçli, B. Ersoy, Bahar Hasanusta +6 more
2023Archiv der Pharmazie6 citations Open access
Semantic Scholar
Effects of Timolol Treatment on Pancreatic Antioxidant Enzymes in Streptozotocin-induced Diabetic Rats: An Experimental and Computational Study
N. Ulusu, Muslum Gok, B. Erman, B. Turan
2019Journal of Medical Biochemistry6 citations Open access
Semantic Scholar
A small molecule identified through an in silico screen inhibits Aurora B–INCENP interaction
Esra Unsal, Bahar Değirmenci, Büşra Harmanda, B. Erman +1 more
2016Chemical Biology and Drug Design6 citations
Semantic Scholar
Engineering molecular machines
B. Erman
20166 citations Open access
Semantic Scholar
Universal features of fluctuations in globular proteins
B. Erman
2016Proteins: Structure, Function, and Bioinformatics6 citations
Semantic Scholar
In silico design of novel and highly selective lysine-specific histone demethylase inhibitors
Ebru Akdoğan, B. Erman, K. Yelekçi
2011Turkish journal of chemistry6 citations Open access
Semantic Scholar
Turkey must end violent response to protests.
E. Altindis, M. Alpar, E. Aksay, J. Beckwith +21 more
2013Science5 citations
Semantic Scholar
Structural cooperativity in histone H3 tail modifications
D. Sanli, O. Keskin, A. Gursoy, B. Erman
2011Protein Science5 citations Open access
Semantic Scholar
Dynamic Coupling and Entropy Changes in KRAS G12D Mutation: Insights into Molecular Flexibility, Allostery and Function
A. Hacisuleyman, Deniz Yuret, B. Erman
2024bioRxiv4 citations Open access
Semantic Scholar
Fine Tuning Rigid Body Docking Results Using the Dreiding Force Field: A Computational Study of 36 Known Nanobody-Protein Complexes
A. Hacisuleyman, B. Erman
2023bioRxiv4 citations Open access
Semantic Scholar
Synergy and anti‐cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS‐RGL1
A. Hacisuleyman, B. Erman
2023Proteins: Structure, Function, and Bioinformatics4 citations Open access
Semantic Scholar
Gaussian network model revisited: effects of mutation and ligand binding on protein behavior
B. Erman
2021bioRxiv4 citations Open access
Semantic Scholar
ModiBodies: A computational method for modifying nanobodies to improve their antigen binding affinity and specificity
A. Hacisuleyman, B. Erman
2019bioRxiv4 citations Open access
Semantic Scholar
Chapter 4 – The Molecular Basis of Rubberlike Elasticity
B. Erman, J. Mark
20134 citations
Semantic Scholar
Quasi‐harmonic fluctuations of two bound peptides
Mert Gur, B. Erman
2012Proteins: Structure, Function, and Bioinformatics4 citations
Semantic Scholar

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