J. Zhang

Most-cited papers

1. Clinical outcomes of oral epithelial dysplasia managed by observation versus excision

   Christophe Bernard, J. Zhang, Hagen B E Klieb, Nick Blanas +2 more

   2023Head and Neck12 citations Open access

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2. Tightly integrated multiomics-based deep tensor survival model for time-to-event prediction

   J. Zhang, Wei Xu, P. Hu

   2022Bioinform.8 citations

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3. The Terry Fox Research Institute Marathon of Hope Cancer Centres Network: A pan-Canadian precision oncology initiative.

   Tess Aalto, M. Abacan, S. Abadi, F. Aghababazadeh +496 more

   2025Cancer Cell5 citations

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4. Image-based histologic grade estimation using stochastic geometry analysis

   Sokol Petushi, J. Zhang, Aladin Milutinovic, D. Breen +1 more

   2011Medical Imaging5 citations Open access

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5. A visual analytics system for breast tumor evaluation.

   Sokol Petushi, Jeffrey Marker, J. Zhang, Weizhong Zhu +4 more

   2008Analytical and quantitative cytology and histology4 citations

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6. AN APPROACH TO ANALYZING HISTOLOGY SEGMENTATIONS USING SHAPE DISTRIBUTIONS

   J. Zhang

   20084 citations

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7. Very late relapse in Hodgkin lymphoma: Characterizing an understudied population.

   H. Cherniawsky, Esther Ting, J. Zhang, Wei Xu +8 more

   2023Clinical Lymphoma, Myeloma & Leukemia2 citations

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8. Single-Position Intervention Fails: Distributed Output Templates Drive In-Context Learning

   Bryan Cheng, J. Zhang

   2026arXiv.org1 citations

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9. ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer

   Bryan Cheng, J. Zhang

   20260 citations

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10. When Does Conformer Geometry Help? Selective Complementarity of 3D Ensemble Statistics and 2D Fingerprints

    Bryan Cheng, Austin Jin, J. Zhang

    2026ACM International Conference on Bioinformatics, Computational Biology and Biomedicine0 citations Open access

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11. When Does Context Help? A Systematic Study of Target-Conditional Molecular Property Prediction

    Bryan Cheng, J. Zhang

    2026arXiv.org0 citations

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12. When Three-Dimensional Conformer Ensembles Improve Molecular Property Prediction Beyond Two-Dimensional Fingerprints: A Systematic Study

    Bryan Cheng, Austin Jin, J. Zhang

    20260 citations

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13. The Mechanistic Invariance Test: Genomic Language Models Fail to Learn Positional Regulatory Logic

    Bryan Cheng, J. Zhang

    20260 citations

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14. DegradoMap: Multi-Modal Protein Representations Enable Pre-Synthesis Prediction of PROTAC Degradability

    Bryan Cheng, J. Zhang, Austin Jin

    2026ACM International Conference on Bioinformatics, Computational Biology and Biomedicine0 citations Open access

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15. State Space Models are Effective Sign Language Learners: Exploiting Phonological Compositionality for Vocabulary-Scale Recognition

    Bryan Cheng, Austin Jin, J. Zhang

    2026arXiv.org0 citations

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16. Information-Theoretic Requirements for Gradient-Based Task Affinity Estimation in Multi-Task Learning

    J. Zhang, Bryan Cheng

    2026arXiv.org0 citations

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17. AN APPROACH TO ANALYZING HISTOLOGY

    J. Zhang

    20080 citations

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18. A study of shape distributions for estimating histologic grade

    J. Zhang, Sokol Petushi, W. Regli, Fernando U. Garcia +1 more

    2008Annual International Conference of the IEEE Engineering in Medicine and Biology Society0 citations

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