Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

P. Rainey · SciRah

Researcher profile · Semantic Scholar

P. Rainey

Share profile

P. Rainey — researcher profile on SciRah

h-index: 72
Works: 221
Citations: 18K

Most-cited papers

Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads
Frederic Bertels, O. Silander, M. Pachkov, P. Rainey +1 more
2014Molecular biology and evolution452 citations Open access
Semantic Scholar
Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease
H. McCann, E. Rikkerink, Frederic Bertels, M. Fiers +12 more
2013PLoS Pathogens246 citations Open access
Semantic Scholar
Life cycles, fitness decoupling and the evolution of multicellularity
Katrin Hammerschmidt, C. Rose, B. Kerr, P. Rainey
2014Nature194 citations
Semantic Scholar
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
L. Freschi, Julie Jeukens, I. Kukavica-Ibrulj, B. Boyle +54 more
2015Frontiers in Microbiology159 citations Open access
Semantic Scholar
Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids
Elena Colombi, C. Straub, Sven Künzel, M. Templeton +2 more
2016bioRxiv131 citations Open access
Semantic Scholar
Experimental evolution reveals hidden diversity in evolutionary pathways
Peter A. Lind, Andrew D. Farr, P. Rainey
2015eLife130 citations Open access
Semantic Scholar
Pseudomonas aeruginosa Exhibits Frequent Recombination, but Only a Limited Association between Genotype and Ecological Setting
T. Kidd, S. Ritchie, K. Ramsay, K. Grimwood +2 more
2012PLoS ONE119 citations Open access
Semantic Scholar
The effect of population structure on the rate of evolution
Marcus Frean, P. Rainey, Arne Traulsen
2013Proceedings of the Royal Society of London. Biological Sciences111 citations Open access
Semantic Scholar
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. V. Insight into the Niche Specialist Fuzzy Spreader Compels Revision of the Model Pseudomonas Radiation
G. Ferguson, Frederic Bertels, P. Rainey
2013Genetics111 citations Open access
Semantic Scholar
The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion.
A. Alsohim, T. B. Taylor, Glyn A. Barrett, J. Gallie +5 more
2014Environmental Microbiology108 citations
Semantic Scholar
Origin and Evolution of the Kiwifruit Canker Pandemic
H. McCann, Li Li, Yifei Liu, Da-Wei Li +8 more
2017Genome Biology and Evolution106 citations Open access
Semantic Scholar
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.
D. Willner, Matthew Haynes, Mike Furlan, N. Hanson +7 more
2012American Journal of Respiratory Cell and Molecular Biology105 citations Open access
Semantic Scholar
Cystic fibrosis therapy: a community ecology perspective.
D. Conrad, Matthew Haynes, P. Salamon, P. Rainey +2 more
2013American Journal of Respiratory Cell and Molecular Biology96 citations Open access
Semantic Scholar
Ecological scaffolding and the evolution of individuality
A. Black, Pierrick Bourrat, P. Rainey
2020Nature Ecology & Evolution95 citations Open access
Semantic Scholar
EXPLORING THE SOCIOBIOLOGY OF PYOVERDIN‐PRODUCING PSEUDOMONAS
Xue-Xian Zhang, P. Rainey
2013Evolution; international journal of organic evolution89 citations
Semantic Scholar
Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113
M. Redondo-Nieto, M. Barret, John P. Morrisey, K. Germaine +14 more
2012Journal of Bacteriology86 citations Open access
Semantic Scholar
Predicting mutational routes to new adaptive phenotypes
Peter A. Lind, E. Libby, J. Herzog, P. Rainey
2018bioRxiv74 citations Open access
Semantic Scholar
A conceptual framework for the evolutionary origins of multicellularity
E. Libby, P. Rainey
2013Physical Biology72 citations Open access
Semantic Scholar
Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra
Sonal Shewaramani, Thomas J. Finn, S. Leahy, R. Kassen +2 more
2017PLoS Genetics71 citations Open access
Semantic Scholar
Competition both drives and impedes diversification in a model adaptive radiation
Susan F. Bailey, Jeremy R. Dettman, P. Rainey, R. Kassen
2013Proceedings of the Royal Society of London. Biological Sciences69 citations Open access
Semantic Scholar
Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens
J. Gallie, E. Libby, Frederic Bertels, P. Remigi +9 more
2015PLoS Biology65 citations Open access
Semantic Scholar
Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity
G. Doulcier, A. Lambert, S. De Monte, P. Rainey
2019bioRxiv61 citations Open access
Semantic Scholar
Resolving Conflicts During the Evolutionary Transition to Multicellular Life
P. Rainey, S. De Monte
201454 citations Open access
Semantic Scholar
Evolutionary convergence in experimental Pseudomonas populations
Peter A. Lind, Andrew D. Farr, P. Rainey
2016The ISME Journal51 citations Open access
Semantic Scholar
Nascent multicellular life and the emergence of individuality
S. De Monte, P. Rainey
2014Journal of Biosciences50 citations
Semantic Scholar
Darwin was right: where now for experimental evolution?
P. Rainey, P. Remigi, Andrew D. Farr, Peter A. Lind
2017Current Opinion in Genetics and Development47 citations Open access
Semantic Scholar
Fragmentation modes and the evolution of life cycles
Yuriy Pichugin, Jorge Peña, P. Rainey, Arne Traulsen
2017bioRxiv44 citations Open access
Semantic Scholar
Meta-population structure and the evolutionary transition to multicellularity
C. Rose, Katrin Hammerschmidt, Yuriy Pichugin, P. Rainey
2018bioRxiv40 citations Open access
Semantic Scholar
Founder niche constrains evolutionary adaptive radiation
R. Flohr, Carsten J Blom, P. Rainey, H. J. Beaumont
2013Proceedings of the National Academy of Sciences of the United States of America36 citations Open access
Semantic Scholar
Correction: Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease
H. McCann, E. Rikkerink, Frederic Bertels, M. Fiers +12 more
2013PLoS Pathogens31 citations Open access
Semantic Scholar
Experimental manipulation of selfish genetic elements links genes to microbial community function
S. Quistad, G. Doulcier, P. Rainey
2019bioRxiv30 citations Open access
Semantic Scholar
Toward a dynamical understanding of microbial communities
P. Rainey, S. Quistad
2020Philosophical Transactions of the Royal Society of London. Biological Sciences28 citations Open access
Semantic Scholar
Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol
Yun-Hao Liu, P. Rainey, Xue-Xian Zhang
2015Molecular Microbiology28 citations Open access
Semantic Scholar
Adaptive evolution by spontaneous domain fusion and protein relocalization
Andrew D. Farr, P. Remigi, P. Rainey
2017Nature Ecology & Evolution26 citations Open access
Semantic Scholar
Role of the Transporter-Like Sensor Kinase CbrA in Histidine Uptake and Signal Transduction
Xue-Xian Zhang, Jonathan Gauntlett, Darby G. Oldenburg, G. Cook +1 more
2015Journal of Bacteriology25 citations Open access
Semantic Scholar
Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts
Xue-Xian Zhang, S. Ritchie, P. Rainey
2013Cellular and Molecular Life Sciences24 citations
Semantic Scholar
Eco-Evolutionary Feedback and the Tuning of Proto-Developmental Life Cycles
E. Libby, P. Rainey
2013PLoS ONE23 citations Open access
Semantic Scholar
The Genetic Structure of Staphylococcus aureus Populations from the Southwest Pacific
S. Ritchie, M. Thomas, P. Rainey
2014PLoS ONE22 citations Open access
Semantic Scholar
Transposable elements promote the evolution of genome streamlining
B. van Dijk, Frederic Bertels, Lianne Stolk, N. Takeuchi +1 more
2021Philosophical Transactions of the Royal Society of London. Biological Sciences21 citations Open access
Semantic Scholar
Major evolutionary transitions in individuality between humans and AI
P. Rainey
2023Philosophical Transactions of the Royal Society of London. Biological Sciences20 citations Open access
Semantic Scholar
Tradeoff breaking as a model of evolutionary transitions in individuality and limits of the fitness-decoupling metaphor
Pierrick Bourrat, G. Doulcier, C. Rose, P. Rainey +1 more
2021bioRxiv19 citations Open access
Semantic Scholar
Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25
J. Gallie, Frederic Bertels, P. Remigi, G. Ferguson +2 more
2019Molecular biology and evolution18 citations Open access
Semantic Scholar
The ecological genetics of Pseudomonas syringae from kiwifruit leaves
C. Straub, Elena Colombi, Li Li, Hong-Wen Huang +3 more
2018Environmental Microbiology17 citations
Semantic Scholar
The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus.
S. Ritchie, E. Isdale, P. Priest, P. Rainey +1 more
2016Journal of Infection17 citations Open access
Semantic Scholar
Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25
Yun-Hao Liu, Chaitanya S. Gokhale, P. Rainey, Xue-Xian Zhang
2017Molecular Microbiology16 citations Open access
Semantic Scholar
Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome
B. van Dijk, Pauline Buffard, Andrew D. Farr, Franz Giersdorf +3 more
2023bioRxiv15 citations Open access
Semantic Scholar
Causes and Biophysical Consequences of Cellulose Production by Pseudomonas fluorescens SBW25 at the Air-Liquid Interface
Maxime Ardré, D. Dufour, P. Rainey
2019Journal of Bacteriology15 citations Open access
Semantic Scholar
The origin and ecological significance of multiple branches for histidine utilization in Pseudomonas aeruginosa PAO1.
M. Gerth, Matteo P. Ferla, P. Rainey
2012Environmental Microbiology15 citations
Semantic Scholar
Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas.
Yun-Hao Liu, P. Rainey, Xue-Xian Zhang
2014Journal of Microbiological Methods14 citations
Semantic Scholar
Variation in transport explains polymorphism of histidine and urocanate utilization in a natural Pseudomonas population.
Xue-Xian Zhang, Hao Chang, Sieu L. Tran, Jonathan Gauntlett +2 more
2012Environmental Microbiology13 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

Xue-Xian Zhang×8
Invite
Xue-Xian Zhang — researcher profile on SciRah
Frederic Bertels×7
Invite
Frederic Bertels — researcher profile on SciRah
H. McCann×5
Invite
H. McCann — researcher profile on SciRah
C. Straub×5
Invite
C. Straub — researcher profile on SciRah

×5

Invite

M. Templeton — researcher profile on SciRah

Andrew D. Farr×5

Invite

Andrew D. Farr — researcher profile on SciRah

Peter A. Lind×4

Invite

Peter A. Lind — researcher profile on SciRah

Invite

S. Ritchie — researcher profile on SciRah

Invite

E. Libby — researcher profile on SciRah

Invite

P. Remigi — researcher profile on SciRah

E. Rikkerink×3

Invite

E. Rikkerink — researcher profile on SciRah

Katrin Hammerschmidt×3

Invite

Katrin Hammerschmidt — researcher profile on SciRah