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R. Beagrie · SciRah

Researcher profile · Semantic Scholar

R. Beagrie

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R. Beagrie — researcher profile on SciRah

h-index: 13
Works: 40
Citations: 1,155

Most-cited papers

Complex multi-enhancer contacts captured by Genome Architecture Mapping (GAM)
R. Beagrie, A. Scialdone, Markus Schueler, Dorothee C. A. Kraemer +13 more
2017Nature652 citations Open access
Semantic Scholar
Dynamics of the 4D genome during in vivo lineage specification and differentiation
A. M. Oudelaar, R. Beagrie, Matthew Gosden, S. de Ornellas +12 more
2020Nature Communications93 citations Open access
Semantic Scholar
Hypoxia induces transcriptional and translational downregulation of the type I interferon (IFN) pathway in multiple cancer cell types
A. Miar, E. Arnaiz, E. Bridges, Shaunna L. Beedie +5 more
2019Cancer Research77 citations Open access
Semantic Scholar
Enhancers predominantly regulate gene expression during differentiation via transcription initiation
M. Larke, R. Schwessinger, Takayuki Nojima, Jelena M. Telenius +9 more
2021Molecules and Cells42 citations Open access
Semantic Scholar
Reactivation of a developmentally silenced embryonic globin gene
Andrew J. King, Duantida Songdej, D. Downes, R. Beagrie +22 more
2021Nature Communications41 citations Open access
Semantic Scholar
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C
R. Beagrie, Christoph J. Thieme, Carlo Annunziatella, Catherine Baugher +12 more
2023Nature Methods32 citations Open access
Semantic Scholar
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale
D. Downes, R. Beagrie, M. Gosden, Jelena M. Telenius +15 more
2021Nature Communications30 citations Open access
Semantic Scholar
Research Data Preservation and Access: The Views of Researchers
N. Beagrie, R. Beagrie, I. Rowlands
200928 citations
Semantic Scholar
The mouse alpha-globin cluster: a paradigm for studying genome regulation and organization
A. M. Oudelaar, R. Beagrie, Mira T. Kassouf, D. Higgs
2020Current Opinion in Genetics and Development25 citations Open access
Semantic Scholar
Recapitulation of erythropoiesis in congenital dyserythropoietic anemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities
C. Scott, D. Downes, Jill M. Brown, R. Beagrie +17 more
2020Haematologica17 citations Open access
Semantic Scholar
Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks
M. Jung, Siqi Shen, G. Botten, Thomas Olender +16 more
2023Journal of Clinical Investigation14 citations Open access
Semantic Scholar
Gene silencing dynamics are modulated by transiently active regulatory elements
M. Vermunt, Jing Luan, Zhe Zhang, A. Thrasher +13 more
2023Molecules and Cells13 citations Open access
Semantic Scholar
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
R. Beagrie, Christoph J. Thieme, Carlo Annunziatella, Catherine Baugher +12 more
2020bioRxiv13 citations Open access
Semantic Scholar
Scalable in vitro production of defined mouse erythroblasts
Helena S. Francis, Caroline L Harold, R. Beagrie, Andrew J. King +6 more
2020bioRxiv13 citations Open access
Semantic Scholar
Making connections: enhancers in cellular differentiation.
J. C. Herrmann, R. Beagrie, J. Hughes
2021Trends in Genetics11 citations
Semantic Scholar
Dynamics of the 4D genome during in vivo lineage specification and differentiation
A. M. Oudelaar, R. Beagrie, M. Gosden, S. de Ornellas +12 more
2020Nature Communications11 citations Open access
Semantic Scholar
Cell cycle: Continuous chromatin changes
R. Beagrie, A. Pombo
2017Nature11 citations Open access
Semantic Scholar
Loop extrusion by cohesin plays a key role in enhancer-activated gene expression during differentiation
Rosa J. Stolper, Felice H. Tsang, E. Georgiades, Lars Peter Hansen +7 more
2023bioRxiv10 citations Open access
Semantic Scholar
swcarpentry/shell-novice: Software Carpentry: the UNIX shell, June 2019
G. Wilson, G. Capes, Gabriel A. Devenyi, Christina Koch +156 more
20194 citations
Semantic Scholar
Modelling erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I)
C. Scott, D. Downes, Jill M. Brown, C. Babbs +17 more
2019bioRxiv3 citations Open access
Semantic Scholar
GAMtools: an automated pipeline for analysis of Genome Architecture Mapping data
R. Beagrie, Markus Schueler
2017bioRxiv3 citations Open access
Semantic Scholar
Loop extrusion by cohesin plays a role in enhancer-activated gene expression early in differentiation
Rosa J. Stolper, Felice H. Tsang, E. Georgiades, L. Hanssen +8 more
2026Nature Communications2 citations Open access
Semantic Scholar
Ancient genomic linkage of α-globin and Nprl3 couples metabolism with erythropoiesis
A. Preston, Joe N. Frost, Megan R. Teh, M. Badat +16 more
2025Nature Communications2 citations Open access
Semantic Scholar
Enhancers predominantly regulate gene expression in vivo via transcription initiation
M. Larke, Takayuki Nojima, Jelena M. Telenius, J. Sharpe +12 more
2019bioRxiv2 citations Open access
Semantic Scholar
Examining Topological Domain Influence on Enhancer Function.
R. Beagrie, A. Pombo
2016Developmental Cell2 citations Open access
Semantic Scholar
Software Carpentry: The Unix Shell
I. Mensa, Piotr Banaszkiewicz, François Michonneau, Orion J. Buske +108 more
20152 citations
Semantic Scholar
FACT safeguards promoter topology by maintaining nucleosomes and restricting chromatin factor spreading
Ana M. Dopico-Fernandez, Hang-Peng Li, Catherine Chahrour, J. Dalgleish +3 more
2026bioRxiv1 citations Open access
Semantic Scholar
Mouse fetal liver erythroid population separation using FACS.
R. Beagrie, D. Downes
20211 citations Open access
Semantic Scholar
Nascent RNA 4sU labelling and enrichment
R. Beagrie, D. Downes
20211 citations Open access
Semantic Scholar
Dynamics of the 4D genome during lineage specification, differentiation and maturation in vivo
A. M. Oudelaar, R. Beagrie, M. Gosden, S. de Ornellas +12 more
20191 citations Open access
Semantic Scholar
Specialised super-enhancer networks in stem cells and neurons
Izabela Harabula, Liam Speakman, Francesco Musella, Luca Forillo +13 more
2025bioRxiv0 citations
Semantic Scholar
2017 – ANCIENT GENOMIC LINKAGE OF NPRL3 AND Α-GLOBIN COUPLES METABOLISM WITH ERYTHROID DEVELOPMENT
A. Preston, J. Frost, Megan R. Teh, M. Badat +16 more
2025Experimental Hematology0 citations
Semantic Scholar
An autosomal dominant cardiac arrhythmia syndrome, ST Depression Syndrome, is caused by the de novo creation of a cardiomyocyte enhancer.
C. P. deVilliers, D. Downes, A. Goel, A. Pagnamenta +28 more
2024medRxiv0 citations Open access
Semantic Scholar
Ancient genomic linkage couples metabolism with erythroid development
A. Preston, J. Frost, M. Badat, Megan R. Teh +14 more
2023bioRxiv0 citations Open access
Semantic Scholar
1008 – FROM GATA2 HUMAN GENETICS TO LEUKEMIA PREDISPOSITION-GENERATING NETWORKS
E. Bresnick, M. Jung, Siqi Shen, G. Botten +10 more
2022Experimental Hematology0 citations Open access
Semantic Scholar
An Ancient Transcriptional Hub Couples Developmentally Regulated Gene Expression with Metabolism during Erythropoiesis
A. Preston, J. Frost, M. Badat, A. Armitage +8 more
2022Blood0 citations Open access
Semantic Scholar
A Way to Reduce the Uncertainties, Optimize and Reduce Time During the Multistage Cut and Retrieve Operations for Surface Plug Placement
M. Volkov, Mal Evans, G. Haggart, R. Gaifutdinov +1 more
20210 citations
Semantic Scholar
Mechanisms of gene activation by metazoan enhancers : New insights and opportunities from high-throughput approaches
R. Beagrie, A. Pombo, A. Pombo
20160 citations
Semantic Scholar
shell-novice: Version 5.3
G. Wilson, R. Olson, W. T. King, fatmai +26 more
20150 citations
Semantic Scholar
Deciphering mechanisms of gene regulation through novel strategies for mapping genome architecture
R. Beagrie
20150 citations
Semantic Scholar

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