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Gilberto P. Pereira · SciRah

Researcher profile · Semantic Scholar

Gilberto P. Pereira

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Gilberto P. Pereira — researcher profile on SciRah

h-index: 8
Works: 16
Citations: 203

Most-cited papers

Towards design of drugs and delivery systems with the Martini coarse-grained model
L. Kjølbye, Gilberto P. Pereira, A. Bartocci, Martina Pannuzzo +9 more
2022QRB Discovery32 citations Open access
Semantic Scholar
Assessing the martini 3 protein model: A review of its path and potential.
L. Borges-Araújo, Gilberto P. Pereira, Mariana Valério, Paulo C. T. Souza
2024Biochimica et Biophysica Acta - Proteins and Proteomics28 citations
Semantic Scholar
Rational Prediction of PROTAC-compatible Protein-Protein Interfaces by Molecular Docking
Gilberto P. Pereira, B. Jiménez-García, R. Pellarin, G. Launay +3 more
2023bioRxiv28 citations Open access
Semantic Scholar
Challenges in predicting PROTAC-mediated protein–protein interfaces with AlphaFold reveal a general limitation on small interfaces
Gilberto P. Pereira, Corentin Gouzien, Paulo C. T. Souza, Juliette Martin
2025bioRxiv27 citations Open access
Semantic Scholar
The Glycine Receptor Allosteric Ligands Library (GRALL)
A. Cerdan, Marion Sisquellas, Gilberto P. Pereira, Diego E. Barreto Gomes +2 more
2020Bioinform.22 citations Open access
Semantic Scholar
Bartender: Martini 3 Bonded Terms via Quantum Mechanics-Based Molecular Dynamics.
Gilberto P. Pereira, Riccardo Alessandri, Moisés Domínguez, Rocío Araya-Osorio +6 more
2024Journal of Chemical Theory and Computation20 citations Open access
Semantic Scholar
Multibasin Quasi-Harmonic Approach for the Calculation of the Configurational Entropy of Small Molecules in Solution.
Gilberto P. Pereira, M. Cecchini
2021Journal of Chemical Theory and Computation14 citations
Semantic Scholar
Fast Parametrization of Martini3 Models for Fragments and Small Molecules.
Magdalena Szczuka, Gilberto P. Pereira, Luis J. Walter, M. Gueroult +4 more
2025Journal of Chemical Theory and Computation8 citations
Semantic Scholar
Capturing the Recognition Dynamics of para-Sulfonato-calix[4]arenes by Cytochrome c: Toward a Quantitative Free Energy Assessment
A. Bartocci, Gilberto P. Pereira, M. Cecchini, É. Dumont
2022Journal of Chemical Information and Modeling8 citations Open access
Semantic Scholar
Spc2 modulates substrate- and cleavage site-selection in the yeast signal peptidase complex
Yeonji Chung, Chewon Yim, Gilberto P. Pereira, Sungjoon Son +7 more
2024Journal of Cell Biology5 citations
Semantic Scholar
Challenges in predicting PROTAC-mediated Protein-Protein Interfaces with AlphaFold
Gilberto P. Pereira, Corentin Gouzien, Paulo C. T. Souza, Juliette Martin
4 citations
Semantic Scholar
Structural basis of signal peptide recognition by the signal peptidase complex
A. Liaci, Dimitrios Vismpas, L. Kjølbye, I. Skalidis +6 more
2026Nature Communications3 citations Open access
Semantic Scholar
Fast parameterization of Martini3 models for fragments and small molecules
Magdalena Szczuka, Gilberto P. Pereira, Luis J. Walter, M. Gueroult +4 more
2025bioRxiv3 citations Open access
Semantic Scholar
Consumption Invariant to Economic Downturn? Evidenceon the Propensity to Consume
Y. Zarinah, G. Pereira
20133 citations Open access
Semantic Scholar
Signal peptidase complexes set species-specific rules for signal peptide cleavage
Yeonji Chung, Gilberto P. Pereira, Young June Lee, Achille Agnesa +5 more
2026bioRxiv0 citations Open access
Semantic Scholar
Accurate prediction of ligand-binding affinities in solution by molecular dynamics simulations
Gilberto P. Pereira
0 citations Open access
Semantic Scholar

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