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S. Auerbach · SciRah

Researcher profile · Semantic Scholar

S. Auerbach

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S. Auerbach — researcher profile on SciRah

h-index: 38
Works: 107
Citations: 6,274

Most-cited papers

A Common MUC5B Promoter Polymorphism and Pulmonary Fibrosis
M. Seibold, A. Wise, M. Speer, M. Steele +25 more
2011New England Journal of Medicine1,084 citations Open access
Semantic Scholar
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium
Zhen-Qiang Su, P. Łabaj, Sheng Li, J. Thierry-Mieg +157 more
2014Nature Biotechnology965 citations Open access
Semantic Scholar
A comprehensive study design reveals treatment- and transcript abundance–dependent concordance between RNA-seq and microarray data
Charles Wang, Bin-Sheng Gong, P. Bushel, J. Thierry-Mieg +42 more
2014Nature Biotechnology467 citations Open access
Semantic Scholar
A Scoping Review of the Health and Toxicological Activity of Bisphenol A (BPA) Structural Analogues and Functional Alternatives.
Katherine E. Pelch, Jessica A. Wignall, A. Goldstone, Pam K. Ross +11 more
2019Toxicology233 citations Open access
Semantic Scholar
In silico toxicology protocols
G. Myatt, Ernst Ahlberg, Y. Akahori, D. Allen +80 more
2018Regulatory toxicology and pharmacology : RTP195 citations Open access
Semantic Scholar
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow
Jason R. Phillips, Daniel L. Svoboda, Arpit Tandon, Shyam Patel +15 more
2018Bioinform.184 citations Open access
Semantic Scholar
An Intuitive Approach for Predicting Potential Human Health Risk with the Tox21 10k Library
Nisha S. Sipes, J. Wambaugh, Robert G. Pearce, S. Auerbach +6 more
2017Environmental Science and Technology140 citations Open access
Semantic Scholar
A Quantitative Approach to Screen for Nephrotoxic Compounds In Vitro.
M. Adler, S. Ramm, M. Hafner, J. Muhlich +9 more
2016Journal of the American Society of Nephrology120 citations Open access
Semantic Scholar
Progress Towards an OECD Reporting Framework for Transcriptomics and Metabolomics in Regulatory Toxicology
J. Harrill, M. Viant, C. Yauk, M. Sachana +38 more
2021Regulatory toxicology and pharmacology : RTP97 citations Open access
Semantic Scholar
Predicting the hepatocarcinogenic potential of alkenylbenzene flavoring agents using toxicogenomics and machine learning.
S. Auerbach, Ruchir R. Shah, D. Mav, Cynthia S. Smith +4 more
2010Toxicology and Applied Pharmacology95 citations
Semantic Scholar
Considerations for Strategic Use of High-Throughput Transcriptomics Chemical Screening Data in Regulatory Decisions
J. Harrill, Imran Shah, R. W. Setzer, D. Haggard +3 more
2019Current Opinion in Toxicology79 citations Open access
Semantic Scholar
Identification of chemical modulators of the constitutive activated receptor (CAR) in a gene expression compendium
K. Oshida, Naresh Vasani, Carlton P. Jones, T. Moore +9 more
2015Nuclear Receptor Signaling79 citations Open access
Semantic Scholar
A Transformative Vision for an Omics-Based Regulatory Chemical Testing Paradigm
K. Johnson, S. Auerbach, Tina Stevens, T. Barton-Maclaren +12 more
2022Toxicological Sciences78 citations Open access
Semantic Scholar
The Importance of the Biological Impact of Exposure to the Concept of the Exposome
Kristine K. Dennis, S. Auerbach, D. Balshaw, Yuxia Cui +5 more
2016Environmental Health Perspectives78 citations Open access
Semantic Scholar
Di(2-ethylhexyl) phthalate Is a Highly Potent Agonist for the Human Constitutive Androstane Receptor Splice Variant CAR2
J. Dekeyser, Michael C. Stagliano, S. Auerbach, K. Prabhu +2 more
2009Molecular Pharmacology77 citations Open access
Semantic Scholar
Evaluation of 5-Day In Vivo Rat Liver and Kidney with High-Throughput Transcriptomics for Estimating Benchmark Doses of Apical Outcomes.
William M. Gwinn, S. Auerbach, Fredrick M Parham, Matthew D. Stout +18 more
2020Toxicological Sciences71 citations Open access
Semantic Scholar
Toxicity and carcinogenicity studies of methylene blue trihydrate in F344N rats and B6C3F1 mice
S. Auerbach, D. Bristol, J. Peckham, G. Travlos +2 more
2009Food and Chemical Toxicology70 citations
Semantic Scholar
QSAR Modeling of SARS‐CoV Mpro Inhibitors Identifies Sufugolix, Cenicriviroc, Proglumetacin, and other Drugs as Candidates for Repurposing against SARS‐CoV‐2
Vinicius M. Alves, Tesia M. Bobrowski, C. Melo-Filho, D. Korn +4 more
2020Molecular Informatics67 citations Open access
Semantic Scholar
Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action
D. Gusenleitner, S. Auerbach, T. Melia, H. Gómez +2 more
2014PLoS ONE67 citations Open access
Semantic Scholar
Technical guide for applications of gene expression profiling in human health risk assessment of environmental chemicals
J. Bourdon-Lacombe, I. Moffat, M. Deveau, M. Husain +6 more
2015Regulatory toxicology and pharmacology : RTP66 citations Open access
Semantic Scholar
The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling.
S. Ramaiahgari, S. Auerbach, Trey Saddler, Julie R. Rice +8 more
2019Toxicological Sciences65 citations Open access
Semantic Scholar
Genetic toxicology in silico protocol
C. Hasselgren, Ernst Ahlberg, Y. Akahori, A. Amberg +70 more
2019Regulatory toxicology and pharmacology : RTP62 citations Open access
Semantic Scholar
RNA-Seq Profiling Reveals Novel Hepatic Gene Expression Pattern in Aflatoxin B1 Treated Rats
B. Merrick, D. Phadke, S. Auerbach, D. Mav +3 more
2013PLoS ONE61 citations Open access
Semantic Scholar
Curated Data In — Trustworthy In Silico Models Out: The Impact of Data Quality on the Reliability of Artificial Intelligence Models as Alternatives to Animal Testing
Vinicius M. Alves, S. Auerbach, N. Kleinstreuer, J. Rooney +4 more
2021Alternatives to laboratory animals : ATLA60 citations Open access
Semantic Scholar
Prioritizing Environmental Chemicals for Obesity and Diabetes Outcomes Research: A Screening Approach Using ToxCast™ High-Throughput Data
S. Auerbach, D. Filer, David M. Reif, V. Walker +7 more
2016Environmental Health Perspectives58 citations Open access
Semantic Scholar
Binding of bisphenol A, bisphenol AF, and bisphenol S on the androgen receptor: Coregulator recruitment and stimulation of potential interaction sites
L. Perera, Yin Li, Laurel A. Coons, R. Houtman +4 more
2017Toxicology in Vitro56 citations Open access
Semantic Scholar
A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples
P. Bushel, R. Paules, S. Auerbach
2018Frontiers in Genetics54 citations Open access
Semantic Scholar
DNA methylation in mice is influenced by genetics as well as sex and life experience
Sara A. Grimm, T. Shimbo, Motoki Takaku, James W. Thomas +19 more
2019Nature Communications52 citations Open access
Semantic Scholar
Benchmark Dose Modeling Estimates of the Concentrations of Inorganic Arsenic that Induce Changes to the Neonatal Transcriptome, Proteome and Epigenome in a Pregnancy Cohort
J. Rager, S. Auerbach, G. Chappell, E. Martin +2 more
2017Chemical Research in Toxicology46 citations
Semantic Scholar
A Rat Liver Transcriptomic Point of Departure Predicts a Prospective Liver or Non-Liver Apical Point of Departure.
K. Johnson, S. Auerbach, Eduardo Costa
2020Toxicological Sciences43 citations Open access
Semantic Scholar
Global Gene Profiling of Spontaneous Hepatocellular Carcinoma in B6C3F1 Mice: Similarities in the Molecular Landscape with Human Liver Cancer
M. Hoenerhoff, A. Pandiri, Stephanie A. Lahousse, Hue-Hua L. Hong +8 more
2011Toxicologic pathology (Print)41 citations Open access
Semantic Scholar
Epigenome-Wide DNA Methylation and Pesticide Use in the Agricultural Lung Health Study
Thanh T. Hoang, Cancan Qi, K. Paul, Mikyeong Lee +13 more
2021Environmental Health Perspectives40 citations Open access
Semantic Scholar
Cell-Based High-Throughput Screening for Aromatase Inhibitors in the Tox21 10K Library.
Shiuan Chen, Jui-Hua Hsieh, Ruili Huang, S. Sakamuru +11 more
2015Toxicological Sciences40 citations Open access
Semantic Scholar
A Comparative 90 Day Toxicity Study of Allyl Acetate, Allyl Alcohol and Acrolein
S. Auerbach, J. Mahler, G. Travlos, R. Irwin
2008Toxicology40 citations Open access
Semantic Scholar
Predictive modeling of biological responses in the rat liver using in vitro Tox21 bioactivity: Benefits from high-throughput toxicokinetics
Caroline L Ring, Nisha S. Sipes, Jui-Hua Hsieh, Celeste K Carberry +5 more
2021Computational Toxicology38 citations Open access
Semantic Scholar
An Overview of National Toxicology Program’s Toxicogenomic Applications: DrugMatrix and ToxFX
Daniel L. Svoboda, Trey Saddler, S. Auerbach
2019Challenges and Advances in Computational Chemistry and Physics37 citations
Semantic Scholar
Identifying Compounds with Genotoxicity Potential Using Tox21 High Throughput Screening Assays
Jui-Hua Hsieh, S. Smith-Roe, Ruili Huang, Alexander Sedykh +6 more
2019Chemical Research in Toxicology36 citations Open access
Semantic Scholar
Real-time cell toxicity profiling of Tox21 10K compounds reveals cytotoxicity dependent toxicity pathway linkage
Jui-Hua Hsieh, Ruili Huang, Ja-an Lin, Alexander Sedykh +5 more
2017PLoS ONE36 citations Open access
Semantic Scholar
Learning from history: do not flatten the curve of antiviral research!
Tesia M. Bobrowski, C. Melo-Filho, D. Korn, Vinicius M. Alves +6 more
2020Drug Discovery Today35 citations Open access
Semantic Scholar
NTP Research Report on Biological Activity of Bisphenol A (BPA) Structural Analogues and Functional Alternatives
Katherine E. Pelch, Jessica A. Wignall, A. Goldstone, Pam K. Ross +9 more
201735 citations Open access
Semantic Scholar
Identifying Attributes That Influence In Vitro-to-In Vivo Concordance by Comparing In Vitro Tox21 Bioactivity Versus In Vivo DrugMatrix Transcriptomic Responses Across 130 Chemicals
W. Klaren, Caroline L Ring, M. Harris, C. Thompson +5 more
2018Toxicological Sciences33 citations Open access
Semantic Scholar
Gender differences in cancer susceptibility: role of oxidative stress.
Imran Ali, J. Högberg, Jui-Hua Hsieh, S. Auerbach +3 more
2016Carcinogenesis33 citations Open access
Semantic Scholar
How Similar is Similar Enough? A Sufficient Similarity Case Study with Ginkgo biloba Extract
N. Catlin, B. Collins, S. Auerbach, S. Ferguson +7 more
2018Food and Chemical Toxicology32 citations Open access
Semantic Scholar
Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq
Bin-Sheng Gong, Charles Wang, Zhen-Qiang Su, H. Hong +6 more
2014Scientific Data31 citations Open access
Semantic Scholar
Harnessing genomics to identify environmental determinants of heritable disease
C. Yauk, J. Lucas Argueso, S. Auerbach, P. Awadalla +25 more
2012Mutation research28 citations Open access
Semantic Scholar
Finding the Bad Actor: Challenges in Identifying Toxic Constituents in Botanical Dietary Supplements
Georgia K Roberts, D. Gardner, P. Foster, P. Howard +5 more
2018Food and Chemical Toxicology27 citations
Semantic Scholar
Differential Transcriptomic Analysis of Spontaneous Lung Tumors in B6C3F1 Mice: Comparison to Human Non–Small Cell Lung Cancer
A. Pandiri, R. Sills, V. Ziglioli, T. Ton +8 more
2012Toxicologic pathology (Print)27 citations Open access
Semantic Scholar
ToxicR: A computational platform in R for computational toxicology and dose–response analyses
M. Wheeler, Sooyeon Lim, J. House, K. Shockley +9 more
2022Computational Toxicology26 citations Open access
Semantic Scholar
Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data
P. Bushel, S. Ferguson, S. Ramaiahgari, R. Paules +1 more
2020Frontiers in Genetics26 citations Open access
Semantic Scholar
The Carcinogenome Project: In Vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity
Amy J. Li, Xiao-Dong Lu, T. Natoli, Joshua A. Bittker +5 more
2018bioRxiv26 citations Open access
Semantic Scholar

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