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Ruifeng Hu · SciRah

Researcher profile · Semantic Scholar

Ruifeng Hu

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Ruifeng Hu — researcher profile on SciRah

h-index: 20
Works: 38
Citations: 1,028

Most-cited papers

PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling
Bing Yao, T. Gui, Xiang-Wei Zeng, Yexuan Deng +19 more
2021Genome Medicine115 citations Open access
Semantic Scholar
PRMT5-dependent transcriptional repression of c-Myc target genes promotes gastric cancer progression
Ming Liu, Bing Yao, T. Gui, Chan Guo +17 more
2020Theranostics94 citations Open access
Semantic Scholar
Deep generative neural network for accurate drug response imputation
P. Jia, Ruifeng Hu, Guangsheng Pei, Yulin Dai +2 more
2021Nature Communications85 citations Open access
Semantic Scholar
WebCSEA: web-based cell-type-specific enrichment analysis of genes
Yulin Dai, Ruifeng Hu, Andi Liu, Kyung Serk Cho +5 more
2022Nucleic Acids Res.79 citations Open access
Semantic Scholar
KinaseMD: kinase mutations and drug response database
Ruifeng Hu, Haodong Xu, P. Jia, Zhong-Ming Zhao
2020Nucleic Acids Res.63 citations Open access
Semantic Scholar
Delivery of platelet TPM3 mRNA into breast cancer cells via microvesicles enhances metastasis
Bing Yao, Shuang Qu, Ruifeng Hu, Wen Gao +3 more
2019FEBS Open Bio54 citations Open access
Semantic Scholar
VISDB: a manually curated database of viral integration sites in the human genome
De-You Tang, Bing-Rui Li, Tianyi Xu, Ruifeng Hu +4 more
2019Nucleic Acids Res.48 citations Open access
Semantic Scholar
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes
Hao-Dong Xu, Ruifeng Hu, P. Jia, Zhong-Ming Zhao
2020Bioinform.41 citations Open access
Semantic Scholar
A panel of miRNAs derived from plasma extracellular vesicles as novel diagnostic biomarkers of lung adenocarcinoma
Bing Yao, Shuang Qu, Ruifeng Hu, Wen Gao +3 more
2019FEBS Open Bio35 citations Open access
Semantic Scholar
Genome-Wide Correlation of DNA Methylation and Gene Expression in Postmortem Brain Tissues of Opioid Use Disorder Patients
Andi Liu, Yulin Dai, E. Mendez, Ruifeng Hu +8 more
2021International Journal of Neuropsychopharmacology34 citations Open access
Semantic Scholar
Angiogenic Gene Networks are Dysregulated in Opioid Use Disorder: Evidence from Multi-Omics and Imaging of Postmortem Human Brain
E. Mendez, Hai-Chao Wei, Ruifeng Hu, L. Stertz +14 more
2021Molecular Psychiatry34 citations Open access
Semantic Scholar
A Framework for Detecting Thyroid Cancer from Ultrasound and Histopathological Images Using Deep Learning, Meta-Heuristics, and MCDM Algorithms
Rohit Sharma, G. K. Mahanti, G. Panda, Adyasha Rath +3 more
2023Journal of Imaging32 citations Open access
Semantic Scholar
TSEA-DB: a trait–tissue association map for human complex traits and diseases
P. Jia, Yulin Dai, Ruifeng Hu, Guangsheng Pei +2 more
2019Nucleic Acids Res.32 citations Open access
Semantic Scholar
ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis
Hao-Dong Xu, Ruifeng Hu, Xian-Jun Dong, Lan Kuang +4 more
2024Nature Communications31 citations Open access
Semantic Scholar
CSEA-DB: an omnibus for human complex trait and cell type associations
Yulin Dai, Ruifeng Hu, A. Manuel, Andi Liu +2 more
2020Nucleic Acids Res.26 citations Open access
Semantic Scholar
White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis
L. Tondo, T. Viola, G. Fries, B. Kluwe-Schiavon +12 more
2021Translational Psychiatry25 citations Open access
Semantic Scholar
scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies
P. Jia, Ruifeng Hu, F. Yan, Yulin Dai +1 more
2022Genome Biology24 citations Open access
Semantic Scholar
Hereditary retinoblastoma iPSC model reveals aberrant spliceosome function driving bone malignancies
Jian Tu, Zi-Jun Huo, Yao Yu, Dandan Zhu +21 more
2022Proceedings of the National Academy of Sciences of the United States of America24 citations Open access
Semantic Scholar
Rewired m6A epitranscriptomic networks link mutant p53 to neoplastic transformation
An Xu, Mo Liu, Mo-Fan Huang, Yang Zhang +29 more
2023Nature Communications23 citations Open access
Semantic Scholar
DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner
Guangsheng Pei, Ruifeng Hu, P. Jia, Zhong-Ming Zhao
2021Nucleic Acids Res.20 citations Open access
Semantic Scholar
Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations
Guangsheng Pei, Ruifeng Hu, Yulin Dai, A. Manuel +2 more
2020Nucleic Acids Research17 citations Open access
Semantic Scholar
Decoding regulatory structures and features from epigenomics profiles: a Roadmap-ENCODE Variational Auto-Encoder (RE-VAE) model
Ruifeng Hu, Guangsheng Pei, P. Jia, Zhong-Ming Zhao
2019Methods14 citations Open access
Semantic Scholar
CleftGeneDB: a resource for annotating genes associated with cleft lip and cleft palate.
Haodong Xu, F. Yan, Ruifeng Hu, A. Suzuki +4 more
2021Science Bulletin13 citations
Semantic Scholar
Decoding whole-genome mutational signatures in 37 human pan-cancers by denoising sparse autoencoder neural network
Guangsheng Pei, Ruifeng Hu, Yulin Dai, Zhong-Ming Zhao +1 more
2020Oncogene12 citations Open access
Semantic Scholar
Diverse types of genomic evidence converge on alcohol use disorder risk genes
Yulin Dai, Ruifeng Hu, Guangsheng Pei, Hui-Ping Zhang +2 more
2020Journal of Medical Genetics12 citations Open access
Semantic Scholar
Benchmark of embedding-based methods for accurate and transferable prediction of drug response
Peilin Jia, Ruifeng Hu, Zhongming Zhao
2023Briefings Bioinform.10 citations
Semantic Scholar
MetaDegron: multimodal feature-integrated protein language model for predicting E3 ligase targeted degrons
Meng-Qiu Zheng, Shao-Feng Lin, Kun-Qi Chen, Ruifeng Hu +3 more
2024Briefings Bioinform.9 citations Open access
Semantic Scholar
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons
Haodong Xu, Ruifeng Hu, Zhongming Zhao
2023Molecular biology and evolution9 citations Open access
Semantic Scholar
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence
Ruifeng Hu, Yulin Dai, P. Jia, Zhong-Ming Zhao
2018Database J. Biol. Databases Curation9 citations Open access
Semantic Scholar
Correction to: PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling
Bing Yao, T. Gui, Xian-Lin Zeng, Yexuan Deng +19 more
2021Genome Medicine7 citations Open access
Semantic Scholar
Dr. Kinase: predicting the drug-resistance hotspots of protein kinases
Shao-Feng Lin, Chao Tu, Ruifeng Hu, Hai-Ji Wang +8 more
2025Nucleic Acids Research5 citations Open access
Semantic Scholar
Deciphering RNA modification and post-transcriptional regulation with NetRNApan
Hao-Dong Xu, Wankun Deng, Ruifeng Hu, Binfeng Liu +7 more
2025Briefings Bioinform.0 citations Open access
Semantic Scholar
Editorial: Deep learning for disease prediction in next-generation sequencing and biomedical imaging data
Saurav Mallik, J. Iwata, Ruifeng Hu, Tapas Si
2023Frontiers in Genetics0 citations Open access
Semantic Scholar
45698 Molecular Signatures of Cocaine Neurotoxicity in Human Brain Models
E. Mendez, L. Stertz, G. Fries, Ruifeng Hu +3 more
2021Journal of Clinical and Translational Science0 citations Open access
Semantic Scholar
Differential Regulation of Angiogenic Gene Networks in Postmortem Brains of Opioid Use Disorder Subjects
E. Mendez, Hai-Chao Wei, L. Stertz, G. Fries +8 more
2021Biological Psychiatry0 citations
Semantic Scholar
4141 Molecular Signatures of Cocaine Toxicity in Postmortem Human Brain and Neurons
E. Mendez, L. Stertz, G. Fries, Ruifeng Hu +3 more
2020Journal of Clinical and Translational Science0 citations Open access
Semantic Scholar
S95PROTEOMICS OF ADDICTION: POSTMORTEM BRAIN ANALYSES OF COCAINE AND OPIOID USE DISORDER
C. Walss-Bass, Ruifeng Hu, L. Stertz, G. Fries +5 more
2019European Neuropsychopharmacology0 citations
Semantic Scholar
Diffusion Tensor Imaging of Cocaine Users and Proteomic Analysis of Postmortem Brains of Subjects Reporting Cocaine Addiction Suggest White Matter Impairment in BA9 Region of Prefrontal Cortex
R. Grassi-Oliveira, L. Tondo, T. Viola, G. Fries +12 more
Biological Psychiatry0 citations
Semantic Scholar

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