Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

A. Nikolskaya · SciRah

Researcher profile · Semantic Scholar

A. Nikolskaya

Share profile

A. Nikolskaya — researcher profile on SciRah

h-index: 20
Works: 36
Citations: 9,731

Most-cited papers

The COG database: an updated version includes eukaryotes
R. Tatusov, N. Fedorova, J. Jackson, Aviva R. Jacobs +13 more
2003BMC Bioinformatics4,522 citations Open access
Semantic Scholar
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
E. Koonin, N. Fedorova, J. Jackson, Aviva R. Jacobs +14 more
2004Genome Biology1,029 citations Open access
Semantic Scholar
CDD: a curated Entrez database of conserved domain alignments
A. Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, N. Fedorova +23 more
2003Nucleic Acids Res.791 citations Open access
Semantic Scholar
Novel domains of the prokaryotic two-component signal transduction systems.
Michael Y. Galperin, A. Nikolskaya, E. Koonin
2001FEMS Microbiology Letters687 citations Open access
Semantic Scholar
InterPro, progress and status in 2005
N. Mulder, R. Apweiler, T. Attwood, A. Bairoch +36 more
2004Nucleic Acids Res.561 citations Open access
Semantic Scholar
New developments in the InterPro database
N. Mulder, R. Apweiler, T. Attwood, A. Bairoch +41 more
2007Nucleic Acids Res.544 citations Open access
Semantic Scholar
Expanded diversity of Asgard archaea and their relationships with eukaryotes
Yang Liu, K. Makarova, Wen-Cong Huang, Y. Wolf +9 more
2021Nature267 citations Open access
Semantic Scholar
PIRSF: family classification system at the Protein Information Resource
Cathy H. Wu, A. Nikolskaya, Hong-Zhan Huang, Lai-Su L. Yeh +16 more
2004Nucleic Acids Res.234 citations Open access
Semantic Scholar
A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family.
A. Nikolskaya, Michael Y. Galperin
2002Nucleic Acids Research213 citations Open access
Semantic Scholar
MMDB: Entrez's 3D-structure database
Jie Chen, John B. Anderson, Carol DeWeese-Scott, N. Fedorova +24 more
2003Nucleic Acids Res.157 citations
Semantic Scholar
Common Extracellular Sensory Domains in Transmembrane Receptors for Diverse Signal Transduction Pathways in Bacteria and Archaea
I. Zhulin, A. Nikolskaya, Michael Y. Galperin
2003Journal of Bacteriology153 citations Open access
Semantic Scholar
The iProClass integrated database for protein functional analysis
Cathy H. Wu, Hong-Zhan Huang, A. Nikolskaya, Zhang-Zhi Hu +1 more
2004Comput. Biol. Chem.106 citations Open access
Semantic Scholar
PIRSF Family Classification System for Protein Functional and Evolutionary Analysis
A. Nikolskaya, C. Arighi, Hong-Zhan Huang, W. C. Barker +1 more
2006Evolutionary bioinformatics online92 citations Open access
Semantic Scholar
MASE1 and MASE2: Two Novel Integral Membrane Sensory Domains
A. Nikolskaya, A. Mulkidjanian, I. Beech, Michael Y. Galperin
2003Journal of Molecular Microbiology and Biotechnology74 citations
Semantic Scholar
Evolutionary Dynamics of N-Glycosylation Sites of Influenza Virus Hemagglutinin
Joshua L. Cherry, D. Lipman, A. Nikolskaya, Y. Wolf
2009PLOS Currents52 citations Open access
Semantic Scholar
Identification of peptide synthetase-encoding genes from filamentous fungi producing host-selective phytotoxins or analogs.
A. Nikolskaya, D. Panaccione, J. D. Walton
1995Gene39 citations
Semantic Scholar
Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product
Geng-Xiang Zhao, D. Kosek, Hongbing Liu, S. Ohlemacher +8 more
2021Journal of the American Chemical Society29 citations Open access
Semantic Scholar
Identification of sensory and signal-transducing domains in two-component signaling systems.
Michael Y. Galperin, A. Nikolskaya
2007Methods in Enzymology27 citations Open access
Semantic Scholar
Reduced virulence caused by meiotic instability of the TOX2 chromosome of the maize pathogen Cochliobolus carbonum.
J. Pitkin, A. Nikolskaya, Joong-Hoon Ahn, J. D. Walton
2000Molecular Plant-Microbe Interactions26 citations Open access
Semantic Scholar
EXG1p, a novel exo-β1,3-glucanase from the fungus Cochliobolus carbonum, contains a repeated motif present in other proteins that interact with polysaccharides1The DNA sequence reported in this article has been submitted to GenBank under the accession number L48994.1
A. Nikolskaya, J. Pitkin, H. J. Schaeffer, Joong-Hoon Ahn +1 more
199820 citations
Semantic Scholar
Projection of seasonal influenza severity from sequence and serological data
Y. Wolf, A. Nikolskaya, Joshua L. Cherry, C. Viboud +2 more
2010PLOS Currents18 citations Open access
Semantic Scholar
Peer Review #3 of "Comparative transcriptome analysis revealed genes involved in the fruiting body development of Ophiocordyceps sinensis (v0.3)"
X. Tong, Han Zhang, Fang Wang, Zheng-Yao Xue +359 more
202014 citations Open access
Semantic Scholar
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
K. Makarova, Brittney Blackburne, Y. Wolf, A. Nikolskaya +5 more
2022Biology Direct12 citations Open access
Semantic Scholar
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase
P. Gaudet, L. Lane, P. Fey, A. Bridge +35 more
2009Database J. Biol. Databases Curation10 citations Open access
Semantic Scholar
Evolution of eukaryotic gene repertoire and gene structure: discovering the unexpected dynamics of genome evolution.
I. Rogozin, V. Babenko, N. Fedorova, J. Jackson +16 more
2003Cold Spring Harbor Symposia on Quantitative Biology10 citations
Semantic Scholar
Ariadne: PyTorch library for particle track reconstruction using deep learning
P. Goncharov, Egor Schavelev, A. Nikolskaya, G. Ososkov
2021PROCEEDINGS OF THE 24TH INTERNATIONAL SCIENTIFIC CONFERENCE OF YOUNG SCIENTISTS AND SPECIALISTS (AYSS-2020)8 citations Open access
Semantic Scholar
EXG1p, a novel exo-beta1,3-glucanase from the fungus Cochliobolus carbonum, contains a repeated motif present in other proteins that interact with polysaccharides.
A. Nikolskaya, J. Pitkin, H. J. Schaeffer, J. Ahn +1 more
1998Biochimica et Biophysica Acta7 citations
Semantic Scholar
Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes
Yang Liu, K. Makarova, Wen-Cong Huang, Y. Wolf +9 more
2020bioRxiv6 citations Open access
Semantic Scholar
Cell Wall Degrading Enzymes in HST-Producing Fungal Pathogens
J. S. Scott-Craig, P. C. Apel-Birkhold, Jenifer M. Görlach, A. Nikolskaya +7 more
19984 citations
Semantic Scholar
Enzymology, Molecular Genetics, and Regulation of Biosynthesis of the Host-Selective Toxin HC-Toxin
J. Walton, Joong-Hoon Ahn, J. Pitkin, Yi-Qiang Cheng +3 more
19984 citations
Semantic Scholar
Protein functional annotation by homology.
R. Mazumder, S. Vasudevan, A. Nikolskaya
2008Methods in molecular biology3 citations
Semantic Scholar
Corrigendum to “Novel domains of the prokaryotic two-component signal transduction systems”: [FEMS Microbiol. Lett. 203 (2001) 11–21]
M. Galperin, A. Nikolskaya, E. Koonin
20012 citations
Semantic Scholar
The PIR SuperFamily (PIRSF) classification system
W. C. Barker, R. Mazumder, A. Nikolskaya, Cathy H. Wu
20051 citations
Semantic Scholar
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
Aimee Caye, G. Chang, Qiang Lai, Tao Chen +289 more
20200 citations Open access
Semantic Scholar
Correspondence between eukaryotic and prokaryotic orthologous gene sets
E. Koonin, N. Fedorova, J. Jackson, Aviva R. Jacobs +14 more
20110 citations
Semantic Scholar
Family Classification and Integrative Analysis for Protein Functional Annotation
Cathy H. Wu, A. Nikolskaya, C. R. Vinayaka, Sehee Chung +2 more
20040 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

E. Koonin×13
Invite
E. Koonin — researcher profile on SciRah
R. Mazumder×11
Invite
R. Mazumder — researcher profile on SciRah
Y. Wolf×11
Invite
Y. Wolf — researcher profile on SciRah
N. Fedorova×8
Invite
N. Fedorova — researcher profile on SciRah

×7

Invite

S. Vasudevan — researcher profile on SciRah

Invite

K. Makarova — researcher profile on SciRah

Invite

Cathy H. Wu — researcher profile on SciRah

Invite

J. Jackson — researcher profile on SciRah

Aviva R. Jacobs×6

Invite

Aviva R. Jacobs — researcher profile on SciRah

Invite

D. Krylov — researcher profile on SciRah

Invite

B. Rao — researcher profile on SciRah

Invite

A. Sverdlov — researcher profile on SciRah