Researcher profile · Semantic Scholar

Benjamin A. Himes

h-index: 13
Works: 27
Citations: 1,051

Most-cited papers

emClarity: Software for High Resolution Cryo-electron Tomography and Sub-tomogram Averaging
Benjamin A. Himes, Pei-Jun Zhang
2018Nature Methods260 citations Open access
Semantic Scholar
Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site
Chuang Liu, J. Perilla, J. Ning, Man-Man Lu +14 more
2016Nature Communications164 citations Open access
Semantic Scholar
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
C. K. Cassidy, Benjamin A. Himes, F. J. Alvarez, Jun Ma +4 more
2015eLife105 citations Open access
Semantic Scholar
Locating macromolecular assemblies in cells by 2D template matching with cisTEM
Bronwyn A. Lucas, Benjamin A. Himes, Liang Xue, T. Grant +2 more
2021bioRxiv101 citations Open access
Semantic Scholar
High-resolution in situ structure determination by cryo-electron tomography and subtomogram averaging using emClarity
T. Ni, T. Frosio, L. Mendonça, Yue-Wen Sheng +3 more
2022Nature Protocols83 citations Open access
Semantic Scholar
In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway
J. Ning, G. Erdemci-Tandogan, Ernest L. Yufenyuy, J. Wagner +5 more
2016Nature Communications53 citations Open access
Semantic Scholar
CryoET structures of immature HIV Gag reveal six-helix bundle
L. Mendonça, Dapeng Sun, J. Ning, Ji-Wei Liu +10 more
2021Communications Biology52 citations Open access
Semantic Scholar
Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations
C. K. Cassidy, Benjamin A. Himes, Dapeng Sun, Jun Ma +5 more
2020Communications Biology43 citations Open access
Semantic Scholar
Cryo-TEM simulations of amorphous radiation-sensitive samples using multislice wave propagation
Benjamin A. Himes, N. Grigorieff
2021bioRxiv42 citations Open access
Semantic Scholar
Classification in Cryo-Electron Tomograms
I. Gubins, Gijs van der Schot, R. Veltkamp, F. Förster +22 more
20193DOR@Eurographics36 citations Open access
Semantic Scholar
Baited reconstruction with 2D template matching for high-resolution structure determination in vitro and in vivo without template bias
Bronwyn A. Lucas, Benjamin A. Himes, N. Grigorieff
2023bioRxiv33 citations Open access
Semantic Scholar
Controlled Bacterial Lysis for Electron Tomography of Native Cell Membranes
Xiaofeng Fu, Benjamin A. Himes, D. Ke, W. J. Rice +2 more
2014Structure33 citations Open access
Semantic Scholar
CryoEM-based Hybrid Modeling Approaches for Structure Determination
C. K. Cassidy, Benjamin A. Himes, Z. Luthey-Schulten, Pei-Jun Zhang
2017Current Opinion in Microbiology21 citations Open access
Semantic Scholar
SHREC’19 Track: Classification in Cryo-Electron Tomograms
I. Gubins, Gijs van der Schot, R. Veltkamp, F. Förster +23 more
20198 citations
Semantic Scholar
High resolution in situ structural determination of heterogeneous specimen
Benjamin A. Himes, Pei-Jun Zhang
2017bioRxiv5 citations Open access
Semantic Scholar
Application of super-resolution and correlative double sampling in cryo-electron microscopy
Yue-Wen Sheng, Peter J Harrison, V. Vogirala, Zheng-Yi Yang +6 more
2022Faraday discussions4 citations Open access
Semantic Scholar
Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling
C. K. Cassidy, Benjamin A. Himes, F. J. Alvarez, Jun Ma +4 more
20153 citations
Semantic Scholar
Author response: CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
C. K. Cassidy, Benjamin A. Himes, F. J. Alvarez, Jun Ma +4 more
20152 citations Open access
Semantic Scholar
3 CTF estimation and image correction ( restoration )
Benjamin A. Himes
20211 citations
Semantic Scholar
CryoET structures of immature HIV Gag reveal a complete six-helix bundle and stabilizing small molecules distinct from IP6
L. Mendonça, Dapeng Sun, J. Ning, Ji-Wei Liu +10 more
2020bioRxiv1 citations Open access
Semantic Scholar
Cryo-Electron Tomography and Computer Simulations Reveal Distinct CheA Kinase Conformation in Bacterial Chemotaxis Signaling Receptor Complex
Benjamin A. Himes, C. K. Cassidy, Jun Ma, F. J. Alvarez +4 more
20151 citations Open access
Semantic Scholar
eScholarship@UMassChan eScholarship@UMassChan
Bronwyn A. Lucas, Benjamin A. Himes, Liang Xue, Timothy Grant +2 more
20210 citations
Semantic Scholar
Author response: Locating macromolecular assemblies in cells by 2D template matching with cisTEM
Bronwyn A. Lucas, Benjamin A. Himes, Liang Xue, T. Grant +2 more
20210 citations Open access
Semantic Scholar
Mapping atomic models back into cells – visual proteomics and in situ structure determination
Benjamin A. Himes
2021Acta Crystallographica Section A: Foundations and Advances0 citations Open access
Semantic Scholar
STRUCTURE DETERMINATION OF HETEROGENEOUS BIOLOGICAL SPECIMENS IN CROWDED ENVIRONMENTS
Benjamin A. Himes
20190 citations
Semantic Scholar
Embracing sample heterogeneity using sub-tomogram averaging
Benjamin A. Himes, Pei-Jun Zhang
20160 citations
Semantic Scholar
Molecular Insights into the Signaling Mechanism of the Histidine Kinase CheA within an Intact Bacterial Chemosensory Array
C. K. Cassidy, Benjamin A. Himes, F. J. Alvarez, J. Perilla +4 more
20150 citations Open access
Semantic Scholar

Jun Ma

×6

J. Ning×5

T. Frosio×4