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Chia-Ying Chen · SciRah

Researcher profile · Semantic Scholar

Chia-Ying Chen

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Chia-Ying Chen — researcher profile on SciRah

h-index: 12
Works: 22
Citations: 915

Most-cited papers

Biogenesis, identification, and function of exonic circular RNAs
I. Chen, Chia-Ying Chen, Trees-Juen Chuang
2015Wiley Interdisciplinary Reviews - RNA370 citations Open access
Semantic Scholar
NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision
Trees-Juen Chuang, Chan-Shuo Wu, Chia-Ying Chen, L. Hung +2 more
2015Nucleic Acids Research113 citations Open access
Semantic Scholar
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Marieke Vromman, J. Anckaert, S. Bortoluzzi, Alessia Buratin +32 more
2023bioRxiv99 citations Open access
Semantic Scholar
Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells
Trees-Juen Chuang, Yen-Ju Chen, Chia-Ying Chen, Te-Lun Mai +13 more
2018Nucleic Acids Research75 citations Open access
Semantic Scholar
Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
Yen-Ju Chen, Chia-Ying Chen, Te-Lun Mai, Chih-Fan Chuang +5 more
2020Genome Research62 citations Open access
Semantic Scholar
Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons
Lien-Szu Wu, Wei-Cheng Cheng, Chia-Ying Chen, Ming-Che Wu +4 more
2019Acta Neuropathologica Communications49 citations Open access
Semantic Scholar
NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors
Chia-Ying Chen, Trees-Juen Chuang
2019BMC Bioinformatics21 citations Open access
Semantic Scholar
Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autism
Te-Lun Mai, Chia-Ying Chen, Yu-Chen Chen, Tai-Wei Chiang +1 more
2021Molecular Psychiatry20 citations Open access
Semantic Scholar
An Evolutionary Landscape of A-to-I RNA Editome across Metazoan Species
L. Hung, Yen-Ju Chen, Te-Lun Mai, Chia-Ying Chen +4 more
2017Genome Biology and Evolution20 citations Open access
Semantic Scholar
FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencing
Tai-Wei Chiang, Song-En Jhong, Yu-Chen Chen, Chia-Ying Chen +2 more
2023Nucleic Acids Research17 citations Open access
Semantic Scholar
Comment on "A comprehensive overview and evaluation of circular RNA detection tools"
Chia-Ying Chen, Trees-Juen Chuang
2019PLoS Comput. Biol.17 citations Open access
Semantic Scholar
Assessing the impacts of various factors on circular RNA reliability
Trees-Juen Chuang, Tai-Wei Chiang, Chia-Ying Chen
2023Life Science Alliance12 citations Open access
Semantic Scholar
Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios
Trees-Juen Chuang, Yu-Hsiang Tseng, Chia-Ying Chen, Yi-Da Wang
2017Scientific Reports11 citations Open access
Semantic Scholar
A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levels
Wei-Min Ho, Chia-Ying Chen, Tai-Wei Chiang, Trees-Juen Chuang
2024Acta Neuropathologica Communications8 citations Open access
Semantic Scholar
Comparative Analyses of Single-Cell Transcriptomic Profiles between In Vitro Totipotent Blastomere-like Cells and In Vivo Early Mouse Embryonic Cells
Po-Yu Lin, Denny Yang, Chi-Hsuan Chuang, Hsuan-Pei Lin +9 more
2021Cells8 citations Open access
Semantic Scholar
Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing
Yu-Chen Chen, Chia-Ying Chen, Tai-Wei Chiang, M. Chan +4 more
2023Nucleic Acids Research7 citations Open access
Semantic Scholar
Purifying selection shapes the coincident SNP distribution of primate coding sequences
Chia-Ying Chen, L. Hung, Chan-Shuo Wu, Trees-Juen Chuang
2016Scientific Reports5 citations Open access
Semantic Scholar
Author Correction: Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Marieke Vromman, J. Anckaert, S. Bortoluzzi, Alessia Buratin +32 more
2025Nature Methods1 citations
Semantic Scholar
Correction: A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levels
Wei-Min Ho, Chia-Ying Chen, Tai-Wei Chiang, Trees-Juen Chuang
2024Acta Neuropathologica Communications1 citations
Semantic Scholar
Detecting intragenic trans-splicing events with hybrid transcriptome sequencing in cancer cells
Yu-Chen Chen, Chia-Ying Chen, Tai-Wei Chiang, M. Chan +4 more
2022bioRxiv0 citations Open access
Semantic Scholar
Assessing the impacts of various factors related to identification, conservation, biogenesis, and function on circular RNA reliability
Trees-Juen Chuang, Tai-Wei Chiang, Chia-Ying Chen
2022bioRxiv0 citations Open access
Semantic Scholar
Genome-wide, integrative analysis implicates circular RNA dysregulation in autism and the corresponding circular RNA-microRNA-mRNA regulatory axes
Yen-Ju Chen, Chia-Ying Chen, Te-Lun Mai, Chih-Fan Chuang +4 more
2019bioRxiv0 citations Open access
Semantic Scholar

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Tai-Wei Chiang×11
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Yu-Chen Chen — researcher profile on SciRah

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