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D. Shoemark · SciRah

Researcher profile · Semantic Scholar

D. Shoemark

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D. Shoemark — researcher profile on SciRah

h-index: 20
Works: 72
Citations: 4,191

Most-cited papers

Neuropilin-1 is a host factor for SARS-CoV-2 infection
James L. Daly, Boris Simonetti, Katja Klein, Kai-En Chen +17 more
2020Science1,193 citations Open access
Semantic Scholar
GDNF, NGF and BDNF as therapeutic options for neurodegeneration.
S. Allen, Judy J. Watson, D. Shoemark, N. Barua +1 more
2013Pharmacology and Therapeutics803 citations
Semantic Scholar
Free fatty acid binding pocket in the locked structure of SARS-CoV-2 spike protein
C. Toelzer, K. Gupta, S. Yadav, Ufuk Borucu +12 more
2020Science386 citations Open access
Semantic Scholar
Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein
A. Davidson, M. Williamson, Sebastian Lewis, D. Shoemark +7 more
2020Genome Medicine365 citations Open access
Semantic Scholar
16S rRNA Next Generation Sequencing Analysis Shows Bacteria in Alzheimer’s Post-Mortem Brain
D. Emery, D. Shoemark, Tom Batstone, C. Waterfall +5 more
2017Frontiers in Aging Neuroscience295 citations Open access
Semantic Scholar
The Microbiome and Disease: Reviewing the Links between the Oral Microbiome, Aging, and Alzheimer's Disease
D. Shoemark, S. Allen
2014Journal of Alzheimer's Disease219 citations Open access
Semantic Scholar
Molecular Simulations suggest Vitamins, Retinoids and Steroids as Ligands of the Free Fatty Acid Pocket of the SARS‐CoV‐2 Spike Protein**
D. Shoemark, Charlotte K. Colenso, C. Toelzer, K. Gupta +6 more
2021Angewandte Chemie87 citations Open access
Semantic Scholar
Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site
A. Davidson, M. Williamson, Sebastian Lewis, D. Shoemark +7 more
2020bioRxiv83 citations Open access
Semantic Scholar
Antiproliferative and Antimigratory Effects of a Novel YAP–TEAD Interaction Inhibitor Identified Using in Silico Molecular Docking
Sarah A. Smith, R. Sessions, D. Shoemark, Christopher Williams +7 more
2019Journal of Medicinal Chemistry80 citations Open access
Semantic Scholar
Enzymatic properties of the lactate dehydrogenase enzyme from Plasmodium falciparum
D. Shoemark, M. Cliff, Richard B. Sessions, A. R. Clarke
2007The FEBS Journal63 citations Open access
Semantic Scholar
Discovery of SARS-CoV-2 Mpro peptide inhibitors from modelling substrate and ligand binding
H. T. Henry Chan, Marc A. Moesser, Rebecca K. Walters, T. R. Malla +24 more
2021bioRxiv61 citations Open access
Semantic Scholar
Protein 4.2: a complex linker.
T. Satchwell, D. Shoemark, R. Sessions, A. Toye
2009Blood Cells, Molecules & Diseases58 citations Open access
Semantic Scholar
Decorating Self-Assembled Peptide Cages with Proteins.
J. F. Ross, A. Bridges, Jordan M. Fletcher, D. Shoemark +11 more
2017ACS Nano54 citations Open access
Semantic Scholar
A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors
A. S. Oliveira, A. Á. Ibarra, I. Bermúdez, L. Casalino +6 more
2021Biophysical Journal47 citations Open access
Semantic Scholar
Beyond icosahedral symmetry in packings of proteins in spherical shells
M. Mosayebi, D. Shoemark, Jordan M. Fletcher, R. Sessions +3 more
2017Proceedings of the National Academy of Sciences of the United States of America41 citations Open access
Semantic Scholar
Guiding biomolecular interactions in cells using de novo protein-protein interfaces
Abigail J. Smith, F. Thomas, D. Shoemark, D. Woolfson +1 more
2018bioRxiv37 citations Open access
Semantic Scholar
Unlocking Nicotinic Selectivity via Direct C‒H Functionalization of (−)-Cytisine
Hugo Rego Campello, Silvia G. del Villar, Aurélien Honraedt, Teresa Minguez +9 more
2018Chem36 citations Open access
Semantic Scholar
Identification of the Initial Steps in Signal Transduction in the α4β2 Nicotinic Receptor: Insights from Equilibrium and Nonequilibrium Simulations.
A. S. Oliveira, D. Shoemark, H. Campello, S. Wonnacott +3 more
2019Structure33 citations Open access
Semantic Scholar
Cloning, sequence and expression of the lactate dehydrogenase gene from the human malaria parasite, Plasmodium vivax
D. Turgut-Balik, Ekrem Akbulut, D. Shoemark, V. Çelik +4 more
2004Biotechnology Letters33 citations
Semantic Scholar
Over-production of lactate dehydrogenase from Plasmodium falciparum opens a route to new antimalarials
D. Turgut-Balik, D. Shoemark, Kathleen M. Moreton, Richard B. Sessions +1 more
2001Biotechnology Letters29 citations Open access
Semantic Scholar
The fatty acid site is coupled to functional motifs in the SARS-CoV-2 spike protein and modulates spike allosteric behaviour
A. S. Oliveira, D. Shoemark, Amaurys Avila Ibarra, A. Davidson +3 more
2021bioRxiv28 citations Open access
Semantic Scholar
Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2
K. Gupta, C. Toelzer, M. Williamson, D. Shoemark +13 more
2022Nature Communications25 citations Open access
Semantic Scholar
Structure of bacterial glutathione-S-transferase maleyl pyruvate isomerase and implications for mechanism of isomerisation.
M. Marsh, D. Shoemark, A. Jacob, C. Robinson +4 more
2008Journal of Molecular Biology23 citations
Semantic Scholar
ESCPE-1 mediates retrograde endosomal sorting of the SARS-CoV-2 host factor Neuropilin-1
Boris Simonetti, James L. Daly, L. Simón-Gracia, Katja Klein +12 more
2022bioRxiv22 citations Open access
Semantic Scholar
Modelling the early evolution of extracellular matrix from modern Ctenophores and Sponges.
Graham W Draper, D. Shoemark, J. C. Adams
2019Essays in Biochemistry21 citations Open access
Semantic Scholar
The de novo design of a biocompatible and functional integral membrane protein using minimal sequence complexity
C. Lalaurie, Virginie Dufour, Anna Meletiou, Sarah Ratcliffe +10 more
2018Scientific Reports19 citations Open access
Semantic Scholar
ACTN1 variants associated with thrombocytopenia
S. Westbury, D. Shoemark, A. Mumford
2017Platelets19 citations Open access
Semantic Scholar
ATG8-dependent LMX1B-autophagy crosstalk shapes human midbrain dopaminergic neuronal resilience
N. Jiménez-Moreno, Madhu Kollareddy, P. Stathakos, Joanna J. Moss +6 more
2023Journal of Cell Biology17 citations Open access
Semantic Scholar
Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors and suggest subtype specificity
A. S. Oliveira, A. Á. Ibarra, I. Bermúdez, L. Casalino +6 more
2020bioRxiv16 citations Open access
Semantic Scholar
SARS-CoV-2 spike variants differ in their allosteric responses to linoleic acid
A. S. Oliveira, D. Shoemark, A. Davidson, I. Berger +2 more
2022bioRxiv14 citations Open access
Semantic Scholar
De Novo Designed Peptide and Protein Hairpins Self‐Assemble into Sheets and Nanoparticles
J. Galloway, Harriet E V Bray, D. Shoemark, Lorna R. Hodgson +10 more
2021Small13 citations Open access
Semantic Scholar
Identification and validation of novel microtubule suppressors with an imidazopyridine scaffold through structure-based virtual screening and docking
S. Elseginy, A. S. Oliveira, D. Shoemark, R. Sessions
2021bioRxiv13 citations Open access
Semantic Scholar
The Core Cysteines, (C909) of Islet Antigen-2 and (C945) of Islet Antigen-2β, Are Crucial to Autoantibody Binding in Type 1 Diabetes
K. Elvers, I. Geoghegan, D. Shoemark, V. Lampasona +2 more
2012Diabetes13 citations Open access
Semantic Scholar
NGF receptor TrkAd5: therapeutic agent and drug design target.
D. Dawbarn, M. Fahey, Judy J. Watson, S. Tyler +6 more
2006Biochemical Society Transactions13 citations
Semantic Scholar
Improved specificity of glutamate decarboxylase 65 autoantibody measurement using luciferase-based immunoprecipitation system (LIPS) assays
R. Wyatt, S. L. Grace, C. Brigatti, D. Liberati +11 more
2023medRxiv11 citations Open access
Semantic Scholar
Design and Nuclear Magnetic Resonance (NMR) Structure Determination of the Second Extracellular Immunoglobulin Tyrosine Kinase A (TrkAIg2) Domain Construct for Binding Site Elucidation in Drug Discovery
D. Shoemark, Christopher Williams, M. Fahey, Judy J. Watson +13 more
2014Journal of Medicinal Chemistry11 citations Open access
Semantic Scholar
Increasing the substrate specificity of Bacillus stearothermophillus lactate dehydrogenase by DNA shuffling
Barış Binay, D. Shoemark, R. Sessions, A. Clarke +1 more
200911 citations
Semantic Scholar
Mutagenic exploration of the active site of lactate dehydrogenase from Plasmodium falciparum
D. Turgut-Balik, D. Shoemark, Richard B. Sessions, Kathleen M. Moreton +1 more
2001Biotechnology Letters10 citations Open access
Semantic Scholar
A conserved arginine with non‐conserved function is a key determinant of agonist selectivity in α7 nicotinic ACh receptors
Teresa Mínguez-Viñas, B. E. Nielsen, D. Shoemark, C. Gotti +7 more
2021British Journal of Pharmacology9 citations Open access
Semantic Scholar
Small-residue packing motifs modulate the structure and function of a minimal de novo membrane protein
P. Curnow, Ben Hardy, Virginie Dufour, Christopher J. Arthur +9 more
2020Scientific Reports9 citations Open access
Semantic Scholar
Emergence of a Thrombospondin Superfamily at the Origin of Metazoans
D. Shoemark, B. Ziegler, Hiroshi Watanabe, Jennifer Strompen +3 more
2019Molecular biology and evolution9 citations Open access
Semantic Scholar
Query-guided protein–protein interaction inhibitor discovery†
S. Celis, Fruzsina Hóbor, T. James, Gail J. Bartlett +10 more
2021Chemical Science8 citations Open access
Semantic Scholar
Molecular Simulations suggest Vitamins, Retinoids and Steroids as Ligands binding the Free Fatty Acid Pocket of SARS-CoV-2 Spike Protein
D. Shoemark, Charlotte K. Colenso, C. Toelzer, K. Gupta +6 more
20208 citations Open access
Semantic Scholar
Identification of β-strand mediated protein–protein interaction inhibitors using ligand-directed fragment ligation
Z. Hegedüs, Fruzsina Hóbor, D. Shoemark, S. Celis +5 more
2020Chemical Science7 citations Open access
Semantic Scholar
Characterization and evolutionary origin of novel C2H2 zinc finger protein (ZNF648) required for both erythroid and megakaryocyte differentiation in humans
Daniel C. J. Ferguson, Juraidah Haji Mokim, Marjolein Meinders, E. R. Moody +11 more
2020Haematologica7 citations Open access
Semantic Scholar
The first 142 amino acids of glutamate decarboxylase do not contribute to epitopes recognized by autoantibodies associated with Type 1 diabetes
R. Wyatt, C. Brigatti, D. Liberati, S. L. Grace +10 more
2018Diabetic Medicine7 citations Open access
Semantic Scholar
Handbook of Infection and Alzheimer’s Disease
D. Shoemark, S. Allen
20177 citations
Semantic Scholar
Identification of novel small molecule TGF-β antagonists using structure-based drug design
Hao Wang, R. Sessions, S. Prime, D. Shoemark +4 more
2013Journal of Computer-Aided Molecular Design7 citations
Semantic Scholar
Expression and Retention of Thymidine Phosphorylase in Cultured Reticulocytes as a Novel Treatment for MNGIE
Marjolein Meinders, D. Shoemark, J. Dobbe, G. Streekstra +2 more
2020Molecular Therapy: Methods & Clinical Development5 citations Open access
Semantic Scholar
Molecular dynamics of spike variants in the locked conformation: RBD interfaces, fatty acid binding and furin cleavage sites
D. Shoemark, A. F. Oliveira, A. Davidson, I. Berger +2 more
2022bioRxiv4 citations Open access
Semantic Scholar

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A. S. Oliveira×7

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Richard B. Sessions×6

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C. Toelzer — researcher profile on SciRah