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Y. Jakubek · SciRah

Researcher profile · Semantic Scholar

Y. Jakubek

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Y. Jakubek — researcher profile on SciRah

h-index: 11
Works: 42
Citations: 346

Most-cited papers

Genomic Landscape Established by Allelic Imbalance in the Cancerization Field of a Normal Appearing Airway
Y. Jakubek, Wenhua Lang, S. Vattathil, Melinda M. Garcia +23 more
2016Cancer Research50 citations Open access
Semantic Scholar
Large-scale analysis of acquired chromosomal alterations in non-tumor samples from patients with cancer
Y. Jakubek, Kyle Chang, S. Sivakumar, Yao Yu +6 more
2019Nature Biotechnology48 citations Open access
Semantic Scholar
Driver Mutations in Normal Airway Epithelium Elucidate Spatiotemporal Resolution of Lung Cancer.
H. Kadara, S. Sivakumar, Y. Jakubek, F. A. S. Lucas +20 more
2019American Journal of Respiratory and Critical Care Medicine34 citations Open access
Semantic Scholar
Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing
Y. Jakubek, Ying Zhou, A. Stilp, Jason Bacon +47 more
2023Nature Genetics30 citations Open access
Semantic Scholar
Risk factors for clonal hematopoiesis of indeterminate potential and mosaic chromosomal alterations
Y. Jakubek, Alexander P. Reiner, M. Honigberg
2022Translational Research: The Journal of Laboratory and Clinical Medicine26 citations Open access
Semantic Scholar
Defining the Comprehensive Genomic Landscapes of Pancreatic Ductal Adenocarcinoma Using Real World Endoscopic Aspiration Samples
Alexander Semaan, V. Bernard, J. Lee, Justin W. Wong +11 more
2020Clinical Cancer Research26 citations Open access
Semantic Scholar
Development of Kras mutant lung adenocarcinoma in mice with knockout of the airway lineage-specific gene Gprc5a
J. Fujimoto, Sayuri Nunomura-Nakamura, Yi-Hua Liu, Wenhua Lang +12 more
2017International Journal of Cancer26 citations Open access
Semantic Scholar
Assessing inter-component heterogeneity of biphasic uterine carcinosarcomas
Yi-Hua Liu, Z. Weber, F. A. S. Lucas, Aditya Deshpande +13 more
2018Gynecologic Oncology17 citations Open access
Semantic Scholar
A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays
Y. Jakubek, D. Cutler
2012BMC Genomics14 citations Open access
Semantic Scholar
Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project
Alexander Semaan, V. Bernard, Justin W. Wong, M. Yuki +17 more
2022bioRxiv13 citations Open access
Semantic Scholar
Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood
Y. Jakubek, Xiao-Long Ma, A. Stilp, Fu-Long Yu +65 more
2025American Journal of Human Genetics11 citations Open access
Semantic Scholar
Directional allelic imbalance profiling and visualization from multi-sample data with RECUR
Y. Jakubek, F. A. S. Lucas, P. Scheet
2018Bioinform.10 citations Open access
Semantic Scholar
Clonal hematopoiesis of indeterminate potential and the risk of cognitive impairment in the Women's Health Initiative Memory Study
Y. Jakubek, Aaron P. Smith, X. Leng, Megan E. Hall +14 more
2025medRxiv7 citations Open access
Semantic Scholar
Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood
Y. Jakubek, Xiao-Long Ma, A. Stilp, Fu-Long Yu +62 more
2024medRxiv7 citations Open access
Semantic Scholar
Determinants of mosaic chromosomal alteration fitness
Y. Pershad, T. Mack, H. Poisner, Y. Jakubek +40 more
2024Nature Communications7 citations Open access
Semantic Scholar
Pan cancer patterns of allelic imbalance from chromosomal alterations in 33 tumor types.
S. Sivakumar, F. A. S. Lucas, Y. Jakubek, Zuhal Ozcan +2 more
2021Genetics5 citations Open access
Semantic Scholar
Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations
J. Weinstock, Sharjeel A. Chaudhry, Maria Ioannou, Maria Viskadourou +50 more
2025Nature Communications3 citations Open access
Semantic Scholar
Disparities in Human Papillomavirus–Associated Cancer Incidence by Appalachian Residence
Todd Burus, Melina Windon, Y. Jakubek, Krystle A. Lang Kuhs
2025JAMA Network Open3 citations Open access
Semantic Scholar
Determinants of mosaic chromosomal alteration fitness
Y. Pershad, T. Mack, H. Poisner, Y. Jakubek +40 more
2023medRxiv3 citations Open access
Semantic Scholar
Pan cancer patterns of allelic imbalance from chromosomal aberrations in 33 tumor types
S. Sivakumar, F. A. S. Lucas, Y. Jakubek, J. Fowler +1 more
2019bioRxiv3 citations Open access
Semantic Scholar
Co-occurring clonal hematopoiesis exhibits strong selection and high leukemia risk
Kara M. Barnao, A. Hubbard, I. Chan, Wei-Yin Zhou +57 more
2026Nature Communications1 citations Open access
Semantic Scholar
qcCHIP: an R package to identify clonal hematopoiesis variants using cohort-specific data characteristics
Xiang Liu, Yi-Han Tang, J. Blachly, Stephen B. Edge +15 more
2025Bioinform.1 citations Open access
Semantic Scholar
The Genetic Determinants and Genomic Consequences of Non-Leukemogenic Somatic Point Mutations
J. Weinstock, Sharjeel A. Chaudhry, Maria Ioannou, Maria Viskadourou +51 more
2024medRxiv1 citations Open access
Semantic Scholar
Chromosomal imbalances detected via RNA-sequencing in 28 cancers
Zuhal Ozcan, F. S. San Lucas, Justin W. Wong, Kyle Chang +4 more
2022Bioinform.1 citations Open access
Semantic Scholar
Mosaic chromosomal alterations in blood across ancestries via whole-genome sequencing
Y. Jakubek, Ying-Xiao Zhou, A. Stilp, Jason Bacon +42 more
2022bioRxiv1 citations Open access
Semantic Scholar
Abstract 1434: Mutational landscape in the normal-appearing airway cancerization field of early-stage non-small cell lung cancer
S. Sivakumar, Y. Jakubek, Wenhua Lang, T. McDowell +19 more
20171 citations
Semantic Scholar
Systematic contextual biases in SegmentNT potentially relevant to other nucleotide transformer models
M. Ebbert, Anna Ho, Madeline L. Page, Bram Dutch +13 more
2026bioRxiv0 citations Open access
Semantic Scholar
Systematic contextual biases in SegmentNT potentially relevant to other nucleotide transformer models
M. Ebbert, Anna Ho, Madeline L. Page, Bram Dutch +13 more
2026Nucleic Acids Research0 citations Open access
Semantic Scholar
Abstract 1511: Longitudinal whole genome sequencing to investigate clonal hematopoiesis dynamics
R. Chebbi, Steven Estus, E. P. Coskun, D. Fardo +4 more
2026Cancer Research0 citations
Semantic Scholar
C94-10 Somatic Mosaicism of the X Chromosome Is Associated With Pulmonary Resilience in Women
W.-Y. Saw, C. Lopes-Ramos, B. Patchen, E. K. Phillips +6 more
2026American Journal of Respiratory and Critical Care Medicine0 citations
Semantic Scholar
Mosaic loss of Y chromosome associates with lung function, emphysema, and epigenetic aging
Woei-Yuh Saw, Kangjin Kim, Yi-Chen Huang, J. H. Yun +26 more
2026American Journal of Respiratory and Critical Care Medicine0 citations Open access
Semantic Scholar
Mosaic Loss of Y chromosome associates with lung function, emphysema and epigenetic aging
Woei-Yuh Saw, Kangjin Kim, Yi-Chen Huang, J. Yun +26 more
2025medRxiv0 citations Open access
Semantic Scholar
Abstract 4849: Mosaic chromosomal alterations in a prospective cohort of Mexican Americans for cancer risk and genetic insights
Jessica Valdebenito, Justin Wong, Dah-Tsyr Chang, Henry F. Gomez +3 more
2024Cancer Research0 citations
Semantic Scholar
Abstract 7345: Double-strand break inference from mosaic chromosomal alterations
Abraham Dutch, C. Bumgardner, Y. Jakubek
2024Cancer Research0 citations
Semantic Scholar
Abstract 3507: Mosaic chromosomal alterations in blood across ancestries via whole-genome sequencing
Y. Jakubek, Ying-Xiao Zhou, A. Stilp, Jason Bacon +42 more
2023Cancer Research0 citations
Semantic Scholar
Abstract 1660: Identification of allelic imbalance utilizing heterozygous genotype allele frequencies and intensities
Kyle Chang, F. S. San Lucas, Zuhal Ozcan, S. Sivakumar +3 more
2019Bioinformatics, Convergence Science, and Systems Biology0 citations
Semantic Scholar
Abstract 3997: Somatic mutational processes in the cancerization field of the normal-appearing airway reveal early drivers in the development of non-small cell lung cancer
S. Sivakumar, Y. Jakubek, F. A. S. Lucas, Wenhua Lang +18 more
2018Tumor Biology0 citations
Semantic Scholar
Abstract 4358: Landscape of allelic imbalance in pan-cancer adjacent normal tissue: Insights into field cancerization and cancer pathogenesis
Y. Jakubek, F. S. San Lucas, S. Sivakumar, Richard G. Fowler +2 more
2018Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Abstract 3587: Intratumoral divergence of copy number alterations in NSCLC
Y. Jakubek, S. Sivakumar, L. Strong, H. Kadara +1 more
20170 citations
Semantic Scholar
Abstract 4056: Development of Kras mutant lung adenocarcinoma in tobacco carcinogen exposed mice with knockout of the airway lineage-specific G-protein coupled receptor Gprc5a
J. Fujimoto, Sayuri Nunomura, Wenhua Lang, Yi-Hua Liu +11 more
20160 citations
Semantic Scholar
Abstract 2993: The landscape of DNA allelic imbalance in the normal-appearing airway field of cancerization
Y. Jakubek, Wenhua Lang, S. Vattathil, Melinda M. Garcia +15 more
20150 citations
Semantic Scholar
Systematic contextual biases in SegmentNT relevant to all nucleotide transformer models
M. Ebbert, Anna Ho, Bram Dutch, Madeline L. Page +13 more
0 citations
Semantic Scholar

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