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Shubhada R. Kulkarni · SciRah

Researcher profile · Semantic Scholar

Shubhada R. Kulkarni

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Shubhada R. Kulkarni — researcher profile on SciRah

h-index: 12
Works: 23
Citations: 2,501

Most-cited papers

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Aziz Khan, O. Fornes, Arnaud Stigliani, Marius Gheorghe +15 more
2017Nucleic Acids Res.990 citations Open access
Semantic Scholar
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Aziz Khan, O. Fornes, Arnaud Stigliani, Marius Gheorghe +15 more
2017Nucleic Acids Research961 citations Open access
Semantic Scholar
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
Shubhada R. Kulkarni, Dries Vaneechoutte, J. Van de Velde, K. Vandepoele
2017bioRxiv119 citations Open access
Semantic Scholar
A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie–Wnt signaling axis in the liver
Donato Inverso, Jing-Jing Shi, Ki-Hong Lee, Moritz Jakab +17 more
2021Developmental Cell97 citations Open access
Semantic Scholar
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development
J. Van Leene, Jonas Blomme, Shubhada R. Kulkarni, Bernard Cannoot +14 more
2016Journal of Experimental Botany92 citations Open access
Semantic Scholar
Temporal multi-omics identifies LRG1 as a vascular niche instructor of metastasis
M. Singhal, N. Gengenbacher, Ashik Ahmed Abdul Pari, Miki Kamiyama +20 more
2021Science Translational Medicine65 citations Open access
Semantic Scholar
Lung endothelium exploits susceptible tumor cell states to instruct metastatic latency
Moritz Jakab, Ki-Hong Lee, Alexey Uvarovskii, S. Ovchinnikova +6 more
2024Nature Cancer35 citations Open access
Semantic Scholar
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
Jasmien Vercruysse, M. Van Bel, C. M. Osuna-Cruz, Shubhada R. Kulkarni +5 more
2019Plant Biotechnology Journal30 citations Open access
Semantic Scholar
Inference of plant gene regulatory networks using data-driven methods: A practical overview.
Shubhada R. Kulkarni, K. Vandepoele
2020Biochimica et Biophysica Acta. Gene Regulatory Mechanisms24 citations Open access
Semantic Scholar
Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin Data1[OPEN]
Shubhada R. Kulkarni, D. M. Jones, K. Vandepoele
2019Plant Physiology23 citations Open access
Semantic Scholar
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)
Kristof De Schutter, Mariya Tsaneva, Shubhada R. Kulkarni, P. Rougé +2 more
2017Rice22 citations Open access
Semantic Scholar
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants1[OPEN]
Nienke Besbrugge, J. Van Leene, Dominique Eeckhout, Bernard Cannoot +14 more
2018Plant Physiology16 citations Open access
Semantic Scholar
JASPAR: an open-access database of transcription factor binding profiles
Aziz Khan, O. Fornes, Arnaud Stigliani, Marius Gheorghe +15 more
20189 citations Open access
Semantic Scholar
GSyellow , a Multifaceted Tag for Functional Protein Analysis in 11 Monocot and Dicot Plants
Nienke Besbrugge, J. Van Leene, Dominique Eeckhout, Bernard Cannoot +13 more
20188 citations
Semantic Scholar
Novel Human Heart–Derived Natural Adeno-Associated Virus Capsid Combines Cardiospecificity With Cardiotropism In Vivo
Daniel Zeissler, Martin Busch, Sebastian Grieskamp, E. Meinhardt +22 more
2025Circulation6 citations Open access
Semantic Scholar
ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced retrograde signaling
Xiaopeng Luo, Xin-Qiang Jiang, Vivian Schmitt, Shubhada R. Kulkarni +6 more
2024Journal of Experimental Botany6 citations Open access
Semantic Scholar
Haemodynamic control of zonated liver function via instructive vascular Wnt signalling
Ki-Hong Lee, Moritz Jakab, Alexey Uvarovskii, Dimitris N. Papageorgiou +25 more
2026Nature Communications1 citations Open access
Semantic Scholar
Extending scope and power of circular RNA research with circtools 2.0
Shubhada R. Kulkarni, C. Dieterich, Tobias Jakobi
2025bioRxiv1 citations Open access
Semantic Scholar
Lung endothelium instructs dormancy of susceptible metastatic tumour cells
Moritz Jakab, Ki-Hong Lee, Alexey Uvarovskii, S. Ovchinnikova +4 more
2022bioRxiv1 citations Open access
Semantic Scholar
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)
Kristof De Schutter, Mariya Tsaneva, Shubhada R. Kulkarni, P. Rougé +2 more
2017Rice1 citations Open access
Semantic Scholar
Circtools 2.0: a comprehensive framework for enhanced circular RNA bioinformatics.
Shubhada R. Kulkarni, Walker J. Compton Mellon, F. Wiedmann, Constanze Schmidt +2 more
2026BMC Bioinformatics0 citations Open access
Semantic Scholar
Enhanced TF binding site maps improve regulatory networks learned from accessible chromatin data
Shubhada R. Kulkarni, D. M. Jones, K. Vandepoele
2019bioRxiv0 citations Open access
Semantic Scholar
Delineating gene regulatory networks in Arabidopsis thaliana
Shubhada R. Kulkarni
20190 citations
Semantic Scholar

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