Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

T. McCaffrey · SciRah

Researcher profile · Semantic Scholar

T. McCaffrey

Share profile

T. McCaffrey — researcher profile on SciRah

h-index: 45
Works: 152
Citations: 6,583

Most-cited papers

HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR
Zachary A. Klase, Prachee Kale, Rafael Winograd, M. Gupta +4 more
2007BMC Molecular Biology452 citations Open access
Semantic Scholar
High-level expression of Egr-1 and Egr-1-inducible genes in mouse and human atherosclerosis.
T. McCaffrey, C. Fu, B. Du, Ş. Ekşinar +7 more
2000Journal of Clinical Investigation319 citations Open access
Semantic Scholar
A link between diabetes and atherosclerosis: Glucose regulates expression of CD36 at the level of translation
E. Griffin, A. Re, N. Hamel, C. Fu +3 more
2001Nature Medicine250 citations
Semantic Scholar
Transforming growth factor-β and atherosclerosis: interwoven atherogenic and atheroprotective aspects
I. Toma, T. McCaffrey
2011Cell and Tissue Research206 citations Open access
Semantic Scholar
HIV-1 TAR miRNA protects against apoptosis by altering cellular gene expression
Zachary A. Klase, Rafael Winograd, Jeremiah C. Davis, Lawrence Carpio +9 more
2009Retrovirology166 citations Open access
Semantic Scholar
Down-Modulation of Lung Immune Responses by Interleukin-10 and Transforming Growth Factor β (TGF-β) and Analysis of TGF-β Receptors I and II in Active Tuberculosis
M. G. Bonecini-Almeida, J. Ho, N. Boechat, R. Huard +9 more
2004Infection and Immunity154 citations Open access
Semantic Scholar
Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization.
P. Cahan, Felicia Rovegno, D. Mooney, John C. Newman +2 more
2007Gene138 citations Open access
Semantic Scholar
BEYOND GENETICS: EPIGENETIC CODE IN CHRONIC KIDNEY DISEASE
Rama Dwivedi, J. Herman, T. McCaffrey, D. Raj
2010Kidney International136 citations Open access
Semantic Scholar
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
G. S. St Laurent, D. Shtokalo, M. Tackett, Zhaoqing Yang +6 more
2012BMC Genomics120 citations Open access
Semantic Scholar
Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology
Sarah K. Hilton, E. Castro-Nallar, M. Pérez-Losada, I. Toma +6 more
2016Frontiers in Microbiology114 citations Open access
Semantic Scholar
Role of Deregulated microRNAs in Breast Cancer Progression Using FFPE Tissue
Liang Chen, Youhuai Li, Yebo Fu, Jin Peng +9 more
2013PLoS ONE107 citations Open access
Semantic Scholar
Novel splice variants of sFlt1 are upregulated in preeclampsia.
M. Heydarian, T. McCaffrey, Liliana Florea, Z. Yang +3 more
2009Placenta98 citations
Semantic Scholar
VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer
G. S. St Laurent, D. Shtokalo, Biao Dong, M. Tackett +8 more
2013Genome Biology88 citations Open access
Semantic Scholar
Down-modulation of lung immune responses by interleukin-10 and transforming growth factor beta (TGF-beta) and analysis of TGF-beta receptors I and II in active tuberculosis.
M. G. Bonecini-Almeida, J. Ho, N. Boechat, R. Huard +9 more
2004Infection and Immunity86 citations
Semantic Scholar
On the importance of small changes in RNA expression.
G. S. St Laurent, D. Shtokalo, M. Tackett, Zhaoqing Yang +5 more
2013Methods76 citations
Semantic Scholar
Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia
I. Toma, M. Siegel, J. Keiser, A. Yakovleva +12 more
2014Journal of Clinical Microbiology75 citations Open access
Semantic Scholar
Elevated Egr-1 in Human Atherosclerotic Cells Transcriptionally Represses the Transforming Growth Factor-β Type II Receptor*
B. Du, C. Fu, K. Kent, Harry L. Bush +4 more
2000Journal of Biological Chemistry69 citations Open access
Semantic Scholar
A LINE-1 Component to Human Aging: Do LINE elements exact a longevity cost for evolutionary advantage?
G. S. St Laurent, Neil Hammell, T. McCaffrey
2010Mechanisms of Ageing and Development67 citations Open access
Semantic Scholar
Apolipoprotein L6, Induced in Atherosclerotic Lesions, Promotes Apoptosis and Blocks Beclin 1-dependent Autophagy in Atherosclerotic Cells*
Siqin Zhaorigetu, Zhaoqing Yang, I. Toma, T. McCaffrey +1 more
2011Journal of Biological Chemistry65 citations Open access
Semantic Scholar
Exposure of Cryptic Domains in the α1-chain of Laminin-1 by Elastase Stimulates Macrophages Urokinase and Matrix Metalloproteinase-9 Expression*
K. M. Faisal Khan, G. Laurie, T. McCaffrey, D. Falcone
2002Journal of Biological Chemistry64 citations Open access
Semantic Scholar
Aspirin Exposure Reveals Novel Genes Associated with Platelet Function and Cardiovascular Events
D. Voora, Derek D. Cyr, J. Lucas, J. Chi +8 more
2013Journal of the American College of Cardiology61 citations Open access
Semantic Scholar
List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists.
P. Cahan, A. M. Ahmad, H. Burke, S. Fu +6 more
2005Gene58 citations
Semantic Scholar
Cardiovascular inflammation and lesion cell apoptosis: A novel connection via the interferon-inducible immunoproteasome
Zhaoqing Yang, Dmitry Gagarin, G. S. St Laurent, Neil Hammell +4 more
2009Arteriosclerosis, Thrombosis and Vascular Biology52 citations Open access
Semantic Scholar
Deep Sequencing Transcriptome Analysis of Murine Wound Healing: Effects of a Multicomponent, Multitarget Natural Product Therapy-Tr14
G. S. St Laurent, B. Seilheimer, M. Tackett, Jian-Hua Zhou +6 more
2017Frontiers in Molecular Biosciences46 citations Open access
Semantic Scholar
Bioregulatory systems medicine: an innovative approach to integrating the science of molecular networks, inflammation, and systems biology with the patient's autoregulatory capacity?
Alyssa W. Goldman, Y. Burmeister, K. Cesnulevicius, M. Herbert +8 more
2015Frontiers in Physiology38 citations Open access
Semantic Scholar
Tyrosine nitration in prostaglandin H(2) synthase.
R. Deeb, M. Resnick, D. Mittar, T. McCaffrey +2 more
2002Journal of Lipid Research38 citations Open access
Semantic Scholar
TGF-beta signaling in atherosclerosis and restenosis.
T. McCaffrey
2009Frontiers in Bioscience37 citations Open access
Semantic Scholar
RNA Sequencing in COVID-19 patients identifies neutrophil activation biomarkers as a promising diagnostic platform for infections
Richard Wargodsky, Philip Dela Cruz, J. Lafleur, D. Yamane +9 more
2022PLoS ONE36 citations Open access
Semantic Scholar
Genomic Profiling Reveals the Potential Role of TCL1A and MDR1 Deficiency in Chemotherapy-Induced Cardiotoxicity
T. McCaffrey, C. Tziros, J. Lewis, R. Katz +14 more
2013International Journal on Biological Sciences34 citations Open access
Semantic Scholar
Rosiglitazone sensitizes MDA-MB-231 breast cancer cells to anti-tumour effects of tumour necrosis factor-alpha, CH11 and CYC202.
M. Mody, Nachiket Dharker, M. Bloomston, Pei-Shan Wang +8 more
2007Endocrine-Related Cancer32 citations Open access
Semantic Scholar
Does metabolic radiolabeling stimulate the stress response? Gene expression profiling reveals differential cellular responses to internal beta vs. external gamma radiation
Nicholas F. Marko, Paul B. Dieffenbach, Gai Yan, S. Ceryak +3 more
2003The FASEB Journal32 citations
Semantic Scholar
Functional annotation of the vlinc class of non-coding RNAs using systems biology approach
G. S. St Laurent, Yuri Vyatkin, D. Antonets, Maxim T. Ri +15 more
2016Nucleic Acids Research30 citations Open access
Semantic Scholar
Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets
Y. Lai, Fan-Ni Zhang, T. Nayak, R. Modarres +2 more
2014BMC Genomics29 citations Open access
Semantic Scholar
RNA sequencing of blood in coronary artery disease: involvement of regulatory T cell imbalance
T. McCaffrey, I. Toma, Zhao Yang, Richard Katz +17 more
2021BMC Medical Genomics27 citations Open access
Semantic Scholar
Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes
L. Chawla, I. Toma, D. Davison, K. Vaziri +5 more
2016BMC Medical Genomics26 citations Open access
Semantic Scholar
Genomic profiling of acquired resistance to apoptosis in cells derived from human atherosclerotic lesions: potential role of STATs, cyclinD1, BAD, and Bcl-XL.
Dmitry Gagarin, Zhaoqing Yang, J. Butler, M. Wimmer +3 more
2005Journal of Molecular and Cellular Cardiology26 citations
Semantic Scholar
Cardiovascular Pharmacogenomics: Current Status and Future Directions—Report of a National Heart, Lung, and Blood Institute Working Group
K. Musunuru, D. Roden, R. Boineau, M. Bristow +7 more
2012Journal of the American Heart Association : Cardiovascular and Cerebrovascular Disease22 citations Open access
Semantic Scholar
BP1 Homeoprotein Enhances Metastatic Potential in ER-negative Breast Cancer
Yebo Fu, Yi Lian, Kyung Soon Kim, Lei Zhang +5 more
2010Journal of Cancer22 citations Open access
Semantic Scholar
BP1, an Isoform of DLX4 Homeoprotein, Negatively Regulates BRCA1 in Sporadic Breast Cancer
Brian Kluk, Yebo Fu, Trina Formolo, Lei Zhang +7 more
2010International Journal on Biological Sciences20 citations Open access
Semantic Scholar
Validation of aspirin response-related transcripts in patients with coronary artery disease and preliminary investigation on CMTM5 function.
Juan Zhang, Teng-fei Liu, Xue-Rong Chen, Wen-Yi Liang +5 more
2017Gene19 citations
Semantic Scholar
Asymptomatic factor VII deficiency: gene analysis and structure–function relationships
D. Kirkel, Ta-Wei Lin, S. Fu, J. Dlott +3 more
2010Blood Coagulation and Fibrinolysis17 citations
Semantic Scholar
INTEGRATION OF LIDAR AND AIRBORNE IMAGERY FOR REALISTIC VISUALIZATION OF 3 D URBAN ENVIRONMENTS
A. Habib, James L. Kersting, T. McCaffrey, A. M. Jarvis
200816 citations
Semantic Scholar
Predictors of high on-aspirin platelet reactivity in elderly patients with coronary artery disease
J.-W. Zhang, W.-W. Liu, T. McCaffrey, X.-Q. He +5 more
2017Clinical Interventions in Aging15 citations Open access
Semantic Scholar
TCF7L2 expression in diabetic patients undergoing bariatric surgery
A. Hindle, F. Brody, R. Tevar, Brian Kluk +3 more
2009Surgical Endoscopy15 citations
Semantic Scholar
Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts
T. McCaffrey, G. S. St Laurent, D. Shtokalo, D. Antonets +4 more
2020BMC Medical Genomics14 citations Open access
Semantic Scholar
Expression of molecular messages for angiogenesis by fibroblasts from aneurysmal abdominal aorta versus dermal fibroblasts.
M. Tilson, C. Fu, S. Xia, D. Syn +2 more
2000International Journal of Surgical Investigation14 citations
Semantic Scholar
Aspirin insensitive thrombophilia: Transcript profiling of blood identifies platelet abnormalities and HLA restriction
P. Fallahi, R. Katz, I. Toma, Ran-Yang Li +14 more
2013Gene13 citations Open access
Semantic Scholar
Resistance to Fas-Induced Apoptosis in Cells from Human Atherosclerotic Lesions: Elevated Bcl-XL Inhibits Apoptosis and Caspase Activation
Zhaoqing Yang, Dmitry Gagarin, A. Ramezani, R. Hawley +1 more
2007Journal of Vascular Research13 citations
Semantic Scholar
RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalance
T. McCaffrey, I. Toma, Zhaoqing Yang, Richard Katz +14 more
2023Journal of Molecular and Cellular Cardiology Plus11 citations Open access
Semantic Scholar
Detecting discordance enrichment among a series of two-sample genome-wide expression data sets
Y. Lai, Fan-Ni Zhang, T. Nayak, R. Modarres +2 more
2017BMC Genomics11 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

I. Toma×12
Invite
I. Toma — researcher profile on SciRah
S. Fu×11
Invite
S. Fu — researcher profile on SciRah
G. S. St Laurent×11
Invite
G. S. St Laurent — researcher profile on SciRah
Zhaoqing Yang×10
Invite
Zhaoqing Yang — researcher profile on SciRah

×7

Invite

D. Shtokalo — researcher profile on SciRah

Invite

M. Tackett — researcher profile on SciRah

Invite

Y. Lai — researcher profile on SciRah

B. Seilheimer×4

Invite

B. Seilheimer — researcher profile on SciRah

Invite

P. Kapranov — researcher profile on SciRah

Yuri Vyatkin×4

Invite

Yuri Vyatkin — researcher profile on SciRah

Invite

D. Antonets — researcher profile on SciRah

M. Heydarian×3

Invite

M. Heydarian — researcher profile on SciRah