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Bradly Alicea · SciRah

Researcher profile · Semantic Scholar

Bradly Alicea

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Bradly Alicea — researcher profile on SciRah

h-index: 11
Works: 167
Citations: 1,450

Most-cited papers

OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
G. Sarma, C. Lee, Thomas E. Portegys, Vahid Ghayoomie +15 more
2018Philosophical Transactions of the Royal Society of London. Biological Sciences101 citations Open access
Semantic Scholar
Network Dynamics of Attention During a Naturalistic Behavioral Paradigm
R. Weber, Bradly Alicea, Richard Huskey, K. Mathiak
2018Frontiers in Human Neuroscience22 citations Open access
Semantic Scholar
An Integrative Introduction to Human Augmentation Science
Bradly Alicea
2018arXiv.org18 citations
Semantic Scholar
Quantifying Mosaic Development: Towards an Evo-Devo Postmodern Synthesis of the Evolution of Development via Differentiation Trees of Embryos
Bradly Alicea, R. Gordon
2016Biology17 citations Open access
Semantic Scholar
Meta-Research: Creating clear and informative image-based figures for scientific publications
A. Antonietti, H. Jambor, Bradly Alicea, Tracy Lynn Audisio +6 more
202016 citations
Semantic Scholar
Braitenberg Vehicles as Developmental Neurosimulation
S. Dvoretskii, Zi-Yi Gong, Ankit Gupta, J. Parent +1 more
2020Artificial Life15 citations Open access
Semantic Scholar
Raising the Connectome: The Emergence of Neuronal Activity and Behavior in Caenorhabditis elegans
Bradly Alicea
2020bioRxiv13 citations Open access
Semantic Scholar
The Emergent Connectome in Caenorhabditis elegans Embryogenesis
Bradly Alicea
2017bioRxiv13 citations Open access
Semantic Scholar
Cell differentiation processes as spatial networks: Identifying four-dimensional structure in embryogenesis
Bradly Alicea, R. Gordon
2018Biosyst.10 citations Open access
Semantic Scholar
Morphozoic, Cellular Automata with Nested Neighborhoods as a Metamorphic Representation of Morphogenesis
Thomas E. Portegys, Gabriel Pascualy, R. Gordon, Steven McGrew +1 more
20179 citations
Semantic Scholar
Neuromatch Academy: a 3-week, online summer school in computational neuroscience
B. '. 't Hart, T. Achakulvisut, A. Adeyemi, A. Akrami +158 more
2022Journal of Open Source Education8 citations Open access
Semantic Scholar
Data-Theoretical Synthesis of the Early Developmental Process
Bradly Alicea, R. Gordon, Thomas E. Portegys
2018bioRxiv7 citations Open access
Semantic Scholar
Embodied cognitive morphogenesis as a route to intelligent systems
Bradly Alicea, R. Gordon, J. Parent
2023Interface Focus6 citations Open access
Semantic Scholar
Connectionism, Complexity, and Living Systems: a comparison of Artificial and Biological Neural Networks
K. Katyal, J. Parent, Bradly Alicea
2021arXiv.org6 citations
Semantic Scholar
The Molecular Basis of Differentiation Wave Activity in Embryogenesis
Bradly Alicea, S. Bastani, Natalie K. Gordon, Susan J. Crawford-Young +1 more
2024bioRxiv5 citations Open access
Semantic Scholar
Raising the Connectome: the emergence of neuronal activity and behavior in C. elegans
Bradly Alicea
20205 citations
Semantic Scholar
Origins of the Embryo: Self-organization through cybernetic regulation
R. Stone, Thomas E. Portegys, G. Mikhailovsky, Bradly Alicea
2018Biosyst.5 citations Open access
Semantic Scholar
Computational, theoretical, and experimental approaches to morphogenesis
A. Igamberdiev, R. Gordon, Bradly Alicea, V. G. Cherdantsev
2018Biosyst.4 citations
Semantic Scholar
Complex Temporal Biology: Towards A Unified Multi-Scale Approach to Predict the Flow of Information.
Bradly Alicea, Chong-Li Yuan
2021Integrative and Comparative Biology3 citations
Semantic Scholar
Information Isometry Technique Reveals Organizational Features in Developmental Cell Lineages
Bradly Alicea, Thomas E. Portegys, R. Gordon
2016bioRxiv3 citations Open access
Semantic Scholar
Evolution in eggs and phases: experimental evolution of fecundity and reproductive timing in Caenorhabditis elegans
Bradly Alicea
2016bioRxiv3 citations Open access
Semantic Scholar
Gibsonian Information: an agent-based paradigm for quantitative information
Bradly Alicea, Daniela Cialfi, A. Lim, J. Parent
20212 citations Open access
Semantic Scholar
Periodicity in the embryo: emergence of order in space, diffusion of order in time
Bradly Alicea, J. Parent, Ujjwal Singh
2021bioRxiv2 citations Open access
Semantic Scholar
Reproducibility for everyone: a community-led initiative with global reach in reproducible research training
Susann Auer, Nele A. Haelterman, T. Weissgerber, Jeffrey C. Erlich +30 more
20202 citations Open access
Semantic Scholar
Towards a digital diatom: image processing and deep learning analysis of Bacillaria paradoxa dynamic morphology
Bradly Alicea, R. Gordon, T. Harbich, Ujjwal Singh +2 more
2019bioRxiv2 citations Open access
Semantic Scholar
Cultural Association based on Machine Learning for Team Formation
Hrishikesh Kulkarni, Bradly Alicea
2019International Conference on Computing Communication Control and automation2 citations Open access
Semantic Scholar
Morphogenetic processes as data: Quantitative structure in the Drosophila eye imaginal disc
Bradly Alicea, Thomas E. Portegys, Diana Gordon, R. Gordon
2018bioRxiv2 citations Open access
Semantic Scholar
Embryo Networks and Connectomes in Caenorhabditis elegans
Bradly Alicea
20182 citations
Semantic Scholar
Comparing SCNT-Derived ESCs and iPSCs
Bradly Alicea, J. Cibelli
20142 citations
Semantic Scholar
Animal-oriented virtual environments: illusion, dilation, and discovery
Bradly Alicea
2014F1000Research2 citations Open access
Semantic Scholar
Modeling Cellular Information Processing Using a Dynamical Approximation of Cellular mRNA
Bradly Alicea
2014bioRxiv2 citations Open access
Semantic Scholar
Layers, Folds, and Semi-Neuronal Information Processing
Bradly Alicea, J. Parent
2022BICA*AI1 citations Open access
Semantic Scholar
Cellular Reprogramming in Bursts and Phases
Bradly Alicea
2021bioRxiv1 citations Open access
Semantic Scholar
Sentiment Progression Based Searching and Indexing of Literary Textual Artefacts
Hrishikesh Kulkarni, Bradly Alicea
2021International Conference on Applications of Natural Language to Data Bases1 citations Open access
Semantic Scholar
Meta-brain Models: biologically-inspired cognitive agents
Bradly Alicea, J. Parent
2021IOP Conference Series: Materials Science and Engineering1 citations Open access
Semantic Scholar
Neuromatch Academy: a 3-week, online summer school in computational neuroscience
B. '. 't Hart, T. Achakulvisut, A. Akrami, Bradly Alicea +26 more
20211 citations Open access
Semantic Scholar
Data Reuse as a Prisoner's Dilemma: the social capital of open science
Bradly Alicea
20171 citations
Semantic Scholar
Genotype-specific developmental plasticity shapes the timing and robustness of reproductive capacity in Caenorhabditis elegans
Bradly Alicea
2016bioRxiv1 citations Open access
Semantic Scholar
C. elegans Embryonic Differentiation Tree (10 division events)
Bradly Alicea, G. Richard
20161 citations
Semantic Scholar
The Network Architecture of Embryo Developmental Regulation
Bradly Alicea
20161 citations
Semantic Scholar
C. intestinalis Embryonic Differentiation Tree (1- to 112-cell stage)
Bradly Alicea, G. Richard
20161 citations
Semantic Scholar
Artificial Life Journal—ALIFE 14 Special Issue
Hiroki Sayama, A. Adamatzky, Bradly Alicea, Jeffrey Barrick +8 more
2016Artificial Life1 citations
Semantic Scholar
The Foundations of Control and Cognition: The Every Good Regulator Theorem
Bradly Alicea, Robert M. Stone
2015Figshare1 citations Open access
Semantic Scholar
Dataset: Fibroblast Reprogramming Diversity
Bradly Alicea, T. Steven, A. Sarah
20151 citations
Semantic Scholar
Using Polysome Isolation with Mechanism Alteration to Uncover Transcriptional and Translational Dynamics in Key Genes
Bradly Alicea, S. Suhr, J. Cibelli
2014bioRxiv1 citations Open access
Semantic Scholar
DevoTG: Temporal Graph Neural Networks for Modeling C. elegans Developmental Connectomics
Jayadratha Gayen, Bradly Alicea
2026arXiv.org0 citations
Semantic Scholar
Phylogenetic Models of Embodied Agents: an eco-evo-devo approach
Bradly Alicea
2026IOP Conference Series: Materials Science and Engineering0 citations Open access
Semantic Scholar
Phylogenetically-mixed Agent Architectures
Bradly Alicea
2026IEEE Symposium on Artificial Life0 citations Open access
Semantic Scholar
Book Review: New Directions (and Insights) in Braitenberg Vehicles and Cognitive Science
Bradly Alicea
2024Artificial Life0 citations
Semantic Scholar
Super-performance: sampling, planning, and ecological information
Bradly Alicea
20230 citations
Semantic Scholar

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