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M. Fagny · SciRah

Researcher profile · Semantic Scholar

M. Fagny

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M. Fagny — researcher profile on SciRah

h-index: 21
Works: 40
Citations: 2,615

Most-cited papers

An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease
S. Horvath, M. Gurven, M. Levine, B. Trumble +18 more
2016Genome Biology678 citations Open access
Semantic Scholar
Understanding Tissue-Specific Gene Regulation
A. Sonawane, John Platig, M. Fagny, Cho-Yi Chen +6 more
2017bioRxiv389 citations Open access
Semantic Scholar
Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues
C. Lopes-Ramos, Cho-Yi Chen, M. Kuijjer, J. Paulson +6 more
2020Cell Reports315 citations Open access
Semantic Scholar
Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes.
Matthieu Deschamps, G. Laval, M. Fagny, Y. Itan +4 more
2016American Journal of Human Genetics246 citations Open access
Semantic Scholar
Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation
Lucas T. Husquin, M. Rotival, M. Fagny, H. Quach +7 more
2018Genome Biology117 citations Open access
Semantic Scholar
Exploring regulation in tissues with eQTL networks
M. Fagny, J. Paulson, M. Kuijjer, A. Sonawane +5 more
2017Proceedings of the National Academy of Sciences of the United States of America87 citations Open access
Semantic Scholar
The epigenomic landscape of African rainforest hunter-gatherers and farmers
M. Fagny, E. Patin, J. MacIsaac, M. Rotival +16 more
2015Nature Communications85 citations Open access
Semantic Scholar
Trends in DNA Methylation with Age Replicate Across Diverse Human Populations
S. Gopalan, O. Carja, M. Fagny, E. Patin +8 more
2016Genetics82 citations Open access
Semantic Scholar
Polygenic Adaptation: Integrating Population Genetics and Gene Regulatory Networks.
M. Fagny, F. Austerlitz
2021Trends in Genetics78 citations Open access
Semantic Scholar
Exploring the occurrence of classic selective sweeps in humans using whole-genome sequencing data sets.
M. Fagny, E. Patin, David Enard, Luis B. Barreiro +2 more
2014Molecular biology and evolution75 citations
Semantic Scholar
Regulatory network changes between cell lines and their tissues of origin
C. Lopes-Ramos, J. Paulson, Cho-Yi Chen, M. Kuijjer +6 more
2017BMC Genomics63 citations Open access
Semantic Scholar
Epigenetic clock analysis in long-term meditators
R. Chaix, M. Álvarez-López, M. Fagny, L. Lémée +4 more
2017Psychoneuroendocrinology60 citations Open access
Semantic Scholar
Differential DNA methylation in experienced meditators after an intensive day of mindfulness-based practice: implications for immune-related pathways.
R. Chaix, M. Fagny, M. Cosín-Tomás, M. Álvarez-López +5 more
2019Brain, behavior, and immunity55 citations Open access
Semantic Scholar
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
J. Paulson, Cho-Yi Chen, C. Lopes-Ramos, M. Kuijjer +5 more
2016BMC Bioinformatics51 citations Open access
Semantic Scholar
Epigenome-wide DNA methylation profiling in Progressive Supranuclear Palsy reveals major changes at DLX1
A. Weber, S. Schwarz, J. Tost, D. Trümbach +15 more
2018Nature Communications29 citations Open access
Semantic Scholar
Sexual dimorphism in gene expression and regulatory networks across human tissues
Cho-Yi Chen, C. Lopes-Ramos, M. Kuijjer, J. Paulson +6 more
2016bioRxiv29 citations Open access
Semantic Scholar
Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function
M. Fagny, John Platig, M. Kuijjer, Xi-Hong Lin +1 more
2019British Journal of Cancer28 citations Open access
Semantic Scholar
Deregulation of microRNA expression in monocytes and CD4+ T lymphocytes from patients with axial spondyloarthritis
O. Fogel, Andreas Bugge Tinggaard, M. Fagny, N. Sigrist +7 more
2019Arthritis Research & Therapy26 citations Open access
Semantic Scholar
Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks
M. Fagny, M. Kuijjer, M. Stam, J. Joets +5 more
2020bioRxiv25 citations Open access
Semantic Scholar
PUMA: PANDA Using MicroRNA Associations
M. Kuijjer, M. Fagny, Alessandro Marin, John Quackenbush +1 more
2019bioRxiv25 citations Open access
Semantic Scholar
Histopathological Image QTL Discovery of Immune Infiltration Variants
J. Barry, M. Fagny, J. Paulson, H. Aerts +2 more
2018iScience22 citations Open access
Semantic Scholar
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks
M. Ben Guebila, Deborah A. Weighill, C. Lopes-Ramos, Rebekka Burkholz +10 more
2022Nature Methods11 citations Open access
Semantic Scholar
Common DNA sequence variation influences epigenetic aging in African populations
Gillian L. Meeks, B. Scelza, Hana M. Asnake, S. Prall +6 more
2024bioRxiv8 citations Open access
Semantic Scholar
Connectivity in eQTL networks dictates reproducibility and genomic properties
Sheila M. Gaynor, M. Fagny, Xi-Hong Lin, John Platig +1 more
2022Cell Reports Methods8 citations Open access
Semantic Scholar
A network-based approach to eQTL interpretation and SNP functional characterization
M. Fagny, J. Paulson, M. Kuijjer, A. Sonawane +5 more
2016bioRxiv6 citations Open access
Semantic Scholar
Complex Traits Heritability is Highly Clustered in the eQTL Bipartite Network
K. Stone, John Platig, J. Quackenbush, M. Fagny
2024bioRxiv4 citations Open access
Semantic Scholar
Common DNA sequence variation influences epigenetic aging in African populations
Gillian L. Meeks, B. Scelza, Hana M. Asnake, S. Prall +6 more
2025Communications Biology3 citations Open access
Semantic Scholar
Histopathological image QTL discovery of thyroid autoimmune disease variants
J. Barry, M. Fagny, J. Paulson, H. Aerts +2 more
2017bioRxiv3 citations Open access
Semantic Scholar
Nongenic cancer-risk SNPs affect oncogenes, tumor suppressor genes, and immune function
M. Fagny, John Platig, M. Kuijjer, X. Lin +1 more
2018bioRxiv2 citations Open access
Semantic Scholar
Transcriptional landscape of cell lines and their tissues of origin
C. Lopes-Ramos, J. Paulson, Cho-Yi Chen, M. Kuijjer +6 more
2016bioRxiv2 citations Open access
Semantic Scholar
Connectivity of variants in eQTL networks dictates reproducibility and functionality
Sheila M. Gaynor, M. Fagny, Xi-Hong Lin, John Platig +1 more
2019bioRxiv1 citations
Semantic Scholar
Additional file 5: Table S1. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
Joseph N. Paulson, Cho-Yi Chen, C. Lopes-Ramos, M. Kuijjer +5 more
20171 citations
Semantic Scholar
How to be dispensable: genomic and transcriptomic determinants in maize genes
J. Joets, Maéva Mollion, Kévin Baudry, M. Fagny +18 more
2026bioRxiv0 citations Open access
Semantic Scholar
Genetics Has Enabled the Improvement of Breeding Strategies: Single-Cell Analysis, Epigenetics, cis-Regulation and Gene Editing to Exploit Genetic Variants Underlying Phenotypes
Eduardo D. Munaiz, M. Fagny, Rafael E. Venado, Jia Shen
2026Crop Breeding, Genetics and Genomics0 citations Open access
Semantic Scholar
Nuclear Myosin 1 links genomic architecture to adipose tissue remodeling, metabolic inflammation and obesity in mice
Samira Khalaji, T. Venit, Zuzana Lukacova, Valentina Fambri +6 more
2025bioRxiv0 citations Open access
Semantic Scholar
Editorial: Applications and Methods in Genomic Networks
M. Fagny, Kimberly Glass, M. Kuijjer
2022Frontiers in Genetics0 citations Open access
Semantic Scholar
Decision letter: The single-cell eQTLGen consortium
S. Montgomery, M. Fagny
20190 citations Open access
Semantic Scholar
Investigating cancer risk germline mutations using eQTL networks
M. Fagny, John Platig, M. Kuijjer, J. Quackenbush
2018Annual International Conference on Research in Computational Molecular Biology0 citations
Semantic Scholar
FRI0165 Micrornas dysregulation in monocytes and t cd4 lymphocytes from patients with axial spondyloarthritis
O. Fogel, A. Bugge Tingaard, M. Fagny, N. Sigrist +6 more
2018FRIDAY, 15 JUNE 20180 citations
Semantic Scholar
Additional file 6: of An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease
S. Horvath, M. Gurven, M. Levine, B. Trumble +18 more
2016Figshare0 citations Open access
Semantic Scholar

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