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E. Lubecka · SciRah

Researcher profile · Semantic Scholar

E. Lubecka

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E. Lubecka — researcher profile on SciRah

h-index: 12
Works: 36
Citations: 604

Most-cited papers

Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment
M. Lensink, G. Brysbaert, Théo Mauri, Nurul Nadzirin +104 more
2021Proteins: Structure, Function, and Bioinformatics104 citations Open access
Semantic Scholar
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment
M. Lensink, G. Brysbaert, Nurul Nadzirin, S. Velankar +101 more
2019Proteins: Structure, Function, and Bioinformatics104 citations Open access
Semantic Scholar
Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment
M. Lensink, G. Brysbaert, Nessim Raouraoua, Paul A. Bates +109 more
2023Proteins: Structure, Function, and Bioinformatics79 citations Open access
Semantic Scholar
Thermodynamics, size, and dynamics of zwitterionic dodecylphosphocholine and anionic sodium dodecyl sulfate mixed micelles
E. Sikorska, D. Wyrzykowski, K. Szutkowski, K. Greber +2 more
2015Journal of Thermal Analysis and Calorimetry51 citations Open access
Semantic Scholar
Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
A. Sieradzan, Jordi Sans-Duñó, E. Lubecka, C. Czaplewski +7 more
2022Journal of Computational Chemistry26 citations
Semantic Scholar
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment.
Anna Antoniak, Iga Biskupek, K. Bojarski, C. Czaplewski +15 more
2021Journal of Molecular Graphics and Modelling25 citations
Semantic Scholar
Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
E. Lubecka, Agnieszka S. Karczynska, A. Lipska, A. Sieradzan +13 more
2019Journal of Molecular Graphics and Modelling25 citations Open access
Semantic Scholar
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
J. E. Fajardo, Rojan Shrestha, Nelson Gil, Adam Belsom +17 more
2020Proteins: Structure, Function, and Bioinformatics20 citations Open access
Semantic Scholar
Introduction of a bounded penalty function in contact‐assisted simulations of protein structures to omit false restraints
E. Lubecka, A. Liwo
2019Journal of Computational Chemistry18 citations
Semantic Scholar
Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field.
A. Sieradzan, C. Czaplewski, P. Krupa, M. Mozolewska +8 more
2021Methods in molecular biology15 citations
Semantic Scholar
Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.
A. Liwo, C. Czaplewski, A. Sieradzan, E. Lubecka +9 more
2020Progress in Molecular Biology and Translational Science15 citations
Semantic Scholar
Recent Developments in Data-Assisted Modeling of Flexible Proteins
C. Czaplewski, Z. Gong, E. Lubecka, Kai Xue +2 more
2021Frontiers in Molecular Biosciences12 citations Open access
Semantic Scholar
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13
Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, M. Mozolewska +13 more
2020Journal of Chemical Information and Modeling12 citations Open access
Semantic Scholar
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13
J. E. Fajardo, Rojan Shrestha, Nelson Gil, Adam Belsom +17 more
2019Proteins: Structure, Function, and Bioinformatics11 citations Open access
Semantic Scholar
A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. II. Backbone-local potentials of coarse-grained O1→4-bonded polyglucose chains.
E. Lubecka, A. Liwo
2017Journal of Chemical Physics11 citations
Semantic Scholar
Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies
E. Lubecka, E. Sikorska, D. Sobolewski, A. Prahl +2 more
2015European Biophysics Journal10 citations Open access
Semantic Scholar
Extension of the Unres Package for Physics-Based Coarse-Grained Simulations of Proteins and Protein Complexes to Very Large Systems
A. Sieradzan, C. Czaplewski, E. Lubecka, A. Lipska +11 more
20219 citations Open access
Semantic Scholar
ESCASA: Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance‐assisted protein structure modeling. I. Backbone and Hβ protons
E. Lubecka, A. Liwo
2021Journal of Computational Chemistry9 citations
Semantic Scholar
NMR studies of new arginine vasopressin analogs modified with alpha-2-indanylglycine enantiomers at position 2 bound to sodium dodecyl sulfate micelles.
E. Lubecka, A. Kwiatkowska, J. Ciarkowski, E. Sikorska
2010Biophysical Chemistry9 citations
Semantic Scholar
Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
R. Ślusarz, E. Lubecka, C. Czaplewski, A. Liwo
2022Frontiers in Molecular Biosciences8 citations Open access
Semantic Scholar
Local and long range potentials for heparin-protein systems for coarse-grained simulations.
S. Samsonov, E. Lubecka, K. Bojarski, R. Ganzynkowicz +1 more
2019Biopolymers8 citations
Semantic Scholar
A coarse‐grained approach to NMR‐data‐assisted modeling of protein structures
E. Lubecka, A. Liwo
2022Journal of Computational Chemistry6 citations
Semantic Scholar
Shielding effect in protein folding.
A. Sieradzan, A. Lipska, E. Lubecka
2018Journal of Molecular Graphics and Modelling6 citations
Semantic Scholar
Implementation of Time-Averaged Restraints with UNRES Coarse-Grained Model of Polypeptide Chains
Co Truong Nguyen, C. Czaplewski, E. Lubecka, A. Liwo
2025Journal of Chemical Theory and Computation3 citations
Semantic Scholar
High Performance Computing with Coarse Grained Model of Biological Macromolecules
E. Lubecka, A. Sieradzan, C. Czaplewski, P. Krupa +1 more
2018Supercomputing Frontiers and Innovations3 citations Open access
Semantic Scholar
UNRES web server: Extensions to nucleic acids, prediction of peptide aggregation, and new types of restrained calculations.
R. Ślusarz, A. Sieradzan, A. Giełdoń, E. Lubecka +5 more
2025Journal of Molecular Biology2 citations Open access
Semantic Scholar
Immunochemical studies of Salmonella Dakar and Salmonella Telaviv O-antigens (serogroup O:28).
H. Dziadziuszko, J. Kumirska, Sylwia Muża, M. Czerwicka +3 more
2012FEMS Microbiology Letters2 citations Open access
Semantic Scholar
The NMR Exchange Format (NEF): Specification and Applications
Eliza Płoskoń, Kumaran Baskaran, Roberto Tejero, C. Schwieters +38 more
2026bioRxiv1 citations Open access
Semantic Scholar
Early Stages of RNA-Mediated Conversion of Human Prions
E. Lubecka, U. Hansmann
2022Journal of Physical Chemistry B1 citations Open access
Semantic Scholar
New UNRES force field package with Fortan 90
E. Lubecka, A. Liwo
20161 citations
Semantic Scholar
Is AI Currently Used in Psychiatric Practice in Poland? Assessing the Frequency of Use and Opinions on the Use of AI in Psychiatric Practice
Magdalena Reclik, E. Lubecka, Barbara Kwaśnica, Anna Kożuch +2 more
2025Journal of Technology in Behavioral Science0 citations
Semantic Scholar
Secondary Structure in Free and Assisted Modeling of Proteins with the Coarse-Grained UNRES Force Field.
E. Lubecka, C. Czaplewski, A. Sieradzan, A. Lipska +2 more
2025Methods in molecular biology0 citations
Semantic Scholar
Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size- and timescales
C. Czaplewski, Paweł Czarnul, Henryk Krawczyk, A. Lipska +6 more
2024Biophysical Journal0 citations
Semantic Scholar
Physics-Based Coarse-Grained Modeling in Bio- and Nanochemistry
A. Liwo, A. Sieradzan, Agnieszka S. Karczynska, E. Lubecka +4 more
2021Practical Aspects of Computational Chemistry V0 citations
Semantic Scholar
Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies
E. Lubecka, E. Sikorska, D. Sobolewski, A. Prahl +2 more
2015European Biophysics Journal0 citations Open access
Semantic Scholar
Investigations into the cutting properties of ceramic tools type TA-Z in face milling of steel 45.
E. Lubecka, P. Lubecki
20010 citations
Semantic Scholar

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