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A. Warmflash · SciRah

Researcher profile · Semantic Scholar

A. Warmflash

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A. Warmflash — researcher profile on SciRah

h-index: 28
Works: 88
Citations: 4,201

Most-cited papers

A method to recapitulate early embryonic spatial patterning in human embryonic stem cells
A. Warmflash, Benoit Sorre, F. Etoc, E. Siggia +1 more
2014Nature Methods826 citations Open access
Semantic Scholar
Supplemental Data Multilineage Transcriptional Priming and Determination of Alternate Hematopoietic Cell Fates
P. Laslo, Chauncey J. Spooner, A. Warmflash, D. Lancki +5 more
2006682 citations
Semantic Scholar
Human neural tube morphogenesis in vitro by geometric constraints
Eyal Karzbrun, Aimal H. Khankhel, Heitor C. Megale, S. Glasauer +7 more
2021Nature200 citations Open access
Semantic Scholar
Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids
Sapna Chhabra, Li-Zhong Liu, Ryan Goh, Xiangyu Kong +1 more
2019PLoS Biology166 citations Open access
Semantic Scholar
Stem Cell Based Embryo Models for Fundamental Research and Translation
Jian-Ping Fu, A. Warmflash, M. Lutolf
2020Nature Materials146 citations Open access
Semantic Scholar
Self-organization of human embryonic stem cells on micropatterns
Alessia Deglincerti, F. Etoc, M. C. Guerra, Iain Martyn +7 more
2016Nature Protocols146 citations Open access
Semantic Scholar
Umbrella sampling for nonequilibrium processes.
A. Warmflash, P. Bhimalapuram, A. Dinner
2007Journal of Chemical Physics139 citations
Semantic Scholar
Chandra Observations of NGC 4636—an Elliptical Galaxy in Turmoil
C. Jones, W. Forman, A. Vikhlinin, M. Markevitch +4 more
2001138 citations Open access
Semantic Scholar
An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling
R. Sciammas, Y. Li, A. Warmflash, Yi-Qun Song +2 more
2011Molecular Systems Biology131 citations Open access
Semantic Scholar
Encoding of temporal signals by the TGF-β pathway and implications for embryonic patterning
Benoit Sorre, A. Warmflash, A. Brivanlou, E. Siggia
2014Developmental Cell119 citations Open access
Semantic Scholar
Rapid changes in morphogen concentration control self-organized patterning in human embryonic stem cells
Idse Heemskerk, Kari Burt, Matthew P. Miller, Sapna Chhabra +3 more
2019eLife112 citations Open access
Semantic Scholar
Dynamics of TGF-β signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4
A. Warmflash, Qixiang Zhang, Benoit Sorre, A. Vonica +2 more
2012Proceedings of the National Academy of Sciences of the United States of America101 citations Open access
Semantic Scholar
Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses
David P. Noren, Wesley H. Chou, Sung-Hoon Lee, A. Qutub +4 more
2016Science Signaling96 citations Open access
Semantic Scholar
Infall of the Elliptical Galaxy NGC 1404 into the Fornax Cluster
M. Machacek, A. Dosaj, W. Forman, C. Jones +4 more
200283 citations Open access
Semantic Scholar
Morphogen and community effects determine cell fates in response to BMP4 signaling in human embryonic stem cells
Anastasiia Nemashkalo, Albert Ruzo, Idse Heemskerk, A. Warmflash
2017Development79 citations Open access
Semantic Scholar
Separating forward and backward pathways in nonequilibrium umbrella sampling.
Alex Dickson, A. Warmflash, A. Dinner
2009Journal of Chemical Physics76 citations
Semantic Scholar
Nonequilibrium umbrella sampling in spaces of many order parameters.
Alex Dickson, A. Warmflash, A. Dinner
2009Journal of Chemical Physics75 citations
Semantic Scholar
A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm
George Britton, Idse Heemskerk, Rachel Hodge, A. Qutub +1 more
2019Development73 citations Open access
Semantic Scholar
Nodal is a short-range morphogen with activity that spreads through a relay mechanism in human gastruloids
Li-Zhong Liu, Anastasiia Nemashkalo, Luisa Rezende, J. Jung +4 more
2021Nature Communications56 citations Open access
Semantic Scholar
Roadmap for the multiscale coupling of biochemical and mechanical signals during development
P. Lenne, E. Munro, Idse Heemskerk, A. Warmflash +24 more
2020Physical Biology55 citations Open access
Semantic Scholar
Synergy with TGFβ ligands switches WNT pathway dynamics from transient to sustained during human pluripotent cell differentiation
Joseph Massey, Yida Liu, Omar E. Alvarenga, T. Saez +2 more
2019Proceedings of the National Academy of Sciences of the United States of America55 citations Open access
Semantic Scholar
SMAD7 directly converts human embryonic stem cells to telencephalic fate by a default mechanism
M. Z. Ozair, S. Noggle, A. Warmflash, J. Krzyspiak +1 more
2013Stem Cells47 citations Open access
Semantic Scholar
Signatures of combinatorial regulation in intrinsic biological noise
A. Warmflash, A. Dinner
2008Proceedings of the National Academy of Sciences of the United States of America46 citations Open access
Semantic Scholar
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR
Emily Sempou, Valentyna Kostiuk, Jie Zhu, M. C. Guerra +8 more
2022Nature Communications39 citations Open access
Semantic Scholar
BMP-treated human embryonic stem cells transcriptionally resemble amnion cells in the monkey embryo
Sapna Chhabra, A. Warmflash
2021bioRxiv39 citations Open access
Semantic Scholar
Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids
Sapna Chhabra, Li-Zhong Liu, Ryan Goh, A. Warmflash
2018bioRxiv36 citations Open access
Semantic Scholar
Pluripotent stem cells as a model for embryonic patterning: From signaling dynamics to spatial organization in a dish
Idse Heemskerk, A. Warmflash
2016Developmental Dynamics33 citations Open access
Semantic Scholar
Pareto Evolution of Gene Networks: An Algorithm to Optimize Multiple Fitness Objectives
A. Warmflash, Paul François, E. Siggia
2012Physical Biology30 citations Open access
Semantic Scholar
Combinatorial interpretation of BMP and WNT controls the decision between primitive streak and extraembryonic fates in human pluripotent stem cells
E. Camacho-Aguilar, Sumin Yoon, M. A. Ortiz-Salazar, Siqi Du +2 more
2024Cell Systems29 citations Open access
Semantic Scholar
Modeling mammalian gastrulation with embryonic stem cells
E. Siggia, A. Warmflash
2017Current Topics in Developmental Biology28 citations Open access
Semantic Scholar
Quantifying cell transitions in C. elegans with data-fitted landscape models
E. Camacho-Aguilar, A. Warmflash, D. Rand
2021bioRxiv27 citations Open access
Semantic Scholar
Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation
Sofiane Hamidi, Yukiko Nakaya, Hiroki Nagai, C. Alev +7 more
2019Development24 citations Open access
Semantic Scholar
Criteria for the standardization of stem-cell-based embryo models
Alfonso Martínez Arias, N. Rivron, Naomi Moris, Patrick P. L. Tam +10 more
2024Nature Cell Biology23 citations
Semantic Scholar
Self-organized signaling in stem cell models of embryos
Li-Zhong Liu, A. Warmflash
2021Stem Cell Reports23 citations Open access
Semantic Scholar
Insights into mammalian morphogen dynamics from embryonic stem cell systems
E. Camacho-Aguilar, A. Warmflash
2020Current Topics in Developmental Biology22 citations Open access
Semantic Scholar
Stem cell-based models of embryos: The need for improved naming conventions
Kirstin R. W. Matthews, Daniel S. Wagner, A. Warmflash
2021Stem Cell Reports20 citations Open access
Semantic Scholar
The Molecular Circuitry underlying pluripotency in embryonic stem cells
A. Warmflash, Brigitte L. Arduini, A. Brivanlou
2012Wiley Interdisciplinary Reviews: Systems Biology and Medicine16 citations Open access
Semantic Scholar
Morphogen dynamics control patterning in a stem cell model of the human embryo
Idse Heemskerk, Kari Burt, Matthew L. Miller, Sapna Chhabra +2 more
2017bioRxiv15 citations Open access
Semantic Scholar
Coco is a dual activity modulator of TGFβ signaling
Alessia Deglincerti, T. Haremaki, A. Warmflash, Benoit Sorre +1 more
2015Development12 citations Open access
Semantic Scholar
Defining Cooperativity in Gene Regulation Locally Through Intrinsic Noise
M. Maienschein-Cline, A. Warmflash, A. Dinner
2010IET Systems Biology12 citations Open access
Semantic Scholar
How noise statistics impact models of enzyme cycles.
A. Warmflash, David N. Adamson, A. Dinner
2008Journal of Chemical Physics12 citations
Semantic Scholar
Conservation of epithelial-to-mesenchymal transition process in neural crest cells and metastatic cancer
April Zhang, Hira Aslam, N. Sharma, A. Warmflash +1 more
2021Cells Tissues Organs11 citations Open access
Semantic Scholar
A Model for TCR Gene Segment Use1
A. Warmflash, A. Dinner
2006Journal of Immunology11 citations
Semantic Scholar
Combinatorial interpretation of BMP and WNT allows BMP to act as a morphogen in time but not in concentration
E. Camacho-Aguilar, Sumin Yoon, M. A. Ortiz-Salazar, A. Warmflash
2023bioRxiv9 citations Open access
Semantic Scholar
cytoNet: Spatiotemporal network analysis of cell communities
A. Mahadevan, Byron L. Long, Chen-Yue W. Hu, David T. Ryan +13 more
2022PLoS Comput. Biol.8 citations Open access
Semantic Scholar
Rapid fabrication of hydrogel micropatterns by projection stereolithography for studying self-organized developmental patterning
Ye Zhu, Daniel W. Sazer, Jordan S. Miller, A. Warmflash
2021bioRxiv7 citations Open access
Semantic Scholar
Synthetic Embryos: Windows into Mammalian Development.
A. Warmflash
2017Cell Stem Cell7 citations Open access
Semantic Scholar
A Model for TCR Gene Segment Use
A. Warmflash, A. Dinner
20067 citations
Semantic Scholar
Statistical Mechanics of Cellular Systems and Processes: Modeling gene regulatory networks for cell fate specification
A. Warmflash, A. Dinner
20096 citations
Semantic Scholar
ETVs dictate hPSC differentiation by tuning biophysical properties
Natalia M Ziojła, Magdalena Socha, M. C. Guerra, Dorota K. Kizewska +7 more
2025Nature Communications5 citations Open access
Semantic Scholar

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