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Samuel B. Fernandes · SciRah

Researcher profile · Semantic Scholar

Samuel B. Fernandes

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Samuel B. Fernandes — researcher profile on SciRah

h-index: 12
Works: 31
Citations: 687

Most-cited papers

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum
Samuel B. Fernandes, K. O. G. Dias, D. F. Ferreira, P. Brown
2017Theoretical and Applied Genetics154 citations Open access
Semantic Scholar
Comparative evolutionary genetics of deleterious load in sorghum and maize
R. Lozano, Elodie Gazave, J. P. D. dos Santos, Markus G. Stetter +11 more
2021Nature Plants86 citations Open access
Semantic Scholar
Machine learning-enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions
John N. Ferguson, Samuel B. Fernandes, B. Monier, Nathan D. Miller +10 more
2020bioRxiv76 citations Open access
Semantic Scholar
Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor)
R. Valluru, Elodie Gazave, Samuel B. Fernandes, John N. Ferguson +8 more
2019Genetics64 citations Open access
Semantic Scholar
Optical topometry and machine learning to rapidly phenotype stomatal patterning traits for maize QTL mapping
Jiayang Xie, Samuel B. Fernandes, D. Mayfield-Jones, G. Erice +3 more
2021Plant Physiology51 citations Open access
Semantic Scholar
Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum
J. P. D. dos Santos, Samuel B. Fernandes, Scott D. Mccoy, R. Lozano +5 more
2019G3: Genes, Genomes, Genetics47 citations Open access
Semantic Scholar
Phenotyping stomatal closure by thermal imaging for GWAS and TWAS of water use efficiency-related genes
C. Pignon, Samuel B. Fernandes, R. Valluru, Nonoy B. Bandillo +6 more
2021bioRxiv43 citations Open access
Semantic Scholar
Multi-Trait Genome-wide Association Studies Reveal Loci Associated with Maize Inflorescence and Leaf Architecture.
Brian R. Rice, Samuel B. Fernandes, A. Lipka
2020Plant and Cell Physiology42 citations Open access
Semantic Scholar
Can improved canopy light transmission ameliorate loss of photosynthetic efficiency in the shade? An investigation of natural variation in Sorghum bicolor
N. Jaikumar, Samantha S. Stutz, Samuel B. Fernandes, A. Leakey +3 more
2021Journal of Experimental Botany28 citations Open access
Semantic Scholar
How Well Can Multivariate and Univariate GWAS Distinguish Between True and Spurious Pleiotropy?
Samuel B. Fernandes, K. S. Zhang, Tiffany M. Jamann, A. Lipka
2021Frontiers in Genetics21 citations Open access
Semantic Scholar
Conserved defense responses between maize and sorghum to Exserohilum turcicum
Xiaoyue Zhang, Samuel B. Fernandes, Christopher M. Kaiser, Pragya Adhikari +3 more
2020BMC Plant Biology20 citations Open access
Semantic Scholar
A multi‐trait multi‐locus stepwise approach for conducting GWAS on correlated traits
Samuel B. Fernandes, T. Casstevens, P. Bradbury, A. Lipka
2022The Plant Genome12 citations Open access
Semantic Scholar
Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum
Pragya Adhikari, Emma Goodrich, Samuel B. Fernandes, A. Lipka +3 more
2020bioRxiv10 citations Open access
Semantic Scholar
A novel strategy to predict clonal composites by jointly modeling spatial variation and genetic competition
F. M. Ferreira, S. Chaves, L. Bhering, R. Alves +8 more
2023Forest Ecology and Management8 citations Open access
Semantic Scholar
Importance of genetic architecture in marker selection decisions for genomic prediction
Rafael Della Coletta, Samuel B. Fernandes, P. Monnahan, M. A. Mikel +3 more
2023bioRxiv7 citations Open access
Semantic Scholar
Linking genetic and environmental factors through marker effect networks to understand trait plasticity
Rafael Della Coletta, Sharon E. Liese, Samuel B. Fernandes, M. A. Mikel +3 more
2023bioRxiv4 citations Open access
Semantic Scholar
Assessment of two statistical approaches for variance genome-wide association studies in plants
M. Murphy, Samuel B. Fernandes, G. Morota, A. Lipka
2022Heredity4 citations Open access
Semantic Scholar
Comparative evolutionary analysis and prediction of deleterious mutation patterns between sorghum and maize
R. Lozano, Elodie Gazave, J. P. D. dos Santos, Markus G. Stetter +9 more
20193 citations Open access
Semantic Scholar
Leveraging mutational burden for complex trait prediction in sorghum
R. Valluru, Elodie Gazave, Samuel B. Fernandes, John N. Ferguson +8 more
2018bioRxiv3 citations Open access
Semantic Scholar
Population Structure Analyses Provide Insight into the Source Populations Underlying Rural Isolated Communities in Illinois
A. Owings, Samuel B. Fernandes, Marcus O. Olatoye, Amanda Fogleman +4 more
2019Human Biology: The Official Publication of the American Association of Anthropological Genetics2 citations
Semantic Scholar
Using machine learning to integrate genetic and environmental data to model genotype-by-environment interactions
Igor K. Fernandes, C. C. Vieira, K. O. Dias, Samuel B. Fernandes
2024bioRxiv1 citations Open access
Semantic Scholar
CorrigendumMulti-Trait Genome-Wide Association Studies Reveal Loci Associated with Maize Inflorescence and Leaf Architecture.
Brian R. Rice, Samuel B. Fernandes, A. Lipka
2020Plant and Cell Physiology1 citations Open access
Semantic Scholar
simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes
Samuel B. Fernandes, Alexander E. Lipka
2020BMC Bioinformatics1 citations Open access
Semantic Scholar
A data-driven approach for enhancing forest productivity by accounting for indirect genetic effects
F. M. Ferreira, S. Chaves, L. Bhering, R. Alves +7 more
2023bioRxiv0 citations Open access
Semantic Scholar
Photosynthetic Performance Measurements in Biomass Sorghum Varietals in Central Illinois during Four Growing Seasons.
N. Jaikumar, Samuel B. Fernandes, A. Leakey, P. Brown +3 more
20210 citations
Semantic Scholar
AI-enabled QTL mapping of stomatal patterning
Jiayang Xie, Samuel B. Fernandes, D. Mayfield-Jones, G. Erice +3 more
20210 citations
Semantic Scholar
Phenotyping stomatal closure by thermal imaging for GWAS and TWAS of water use efficiency-related genes
C. Pignon, Samuel B. Fernandes, R. Valluru, Nonoy B. Bandillo +6 more
20210 citations
Semantic Scholar
Full title : Phenotyping stomatal closure by thermal 4 imaging for GWAS and TWAS of water use efficiency-5 related genes 6
C. Pignon, Samuel B. Fernandes, R. Valluru, Nonoy B. Bandillo +7 more
20210 citations
Semantic Scholar
title 1 AI and HTP for GWAS and TWAS of WUE in sorghum 2 3 Corresponding
John N. Ferguson, Samuel B. Fernandes, B. Monier, Nathan D. Miller +16 more
20210 citations
Semantic Scholar
Simulation study evaluating the ability of two statistical approaches to identify variance quantitative trait loci Arabidopsis and maize
M. Murphy, Samuel B. Fernandes, G. Morota, A. Lipka
2021bioRxiv0 citations Open access
Semantic Scholar
Simulation of Pleiotropic, Linked and Epistatic Phenotypes [R package simplePHENOTYPES version 1.2.4]
Samuel B. Fernandes, A. Lipka
20200 citations
Semantic Scholar

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