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J. J. Madsen · SciRah

Researcher profile · Semantic Scholar

J. J. Madsen

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J. J. Madsen — researcher profile on SciRah

h-index: 16
Works: 39
Citations: 655

Most-cited papers

Acid activation mechanism of the influenza A M2 proton channel
Rui-Bin Liang, Jessica M. J. Swanson, J. J. Madsen, M. Hong +2 more
2016Proceedings of the National Academy of Sciences of the United States of America98 citations Open access
Semantic Scholar
Binding of serotonin to lipid membranes.
G. H. Peters, Chunhua Wang, Nicolaj Cruys‐Bagger, G. Velardez +2 more
2013Journal of the American Chemical Society59 citations Open access
Semantic Scholar
Entropic forces drive clustering and spatial localization of influenza A M2 during viral budding
J. J. Madsen, John M. A. Grime, J. Rossman, G. Voth
2018Proceedings of the National Academy of Sciences of the United States of America50 citations Open access
Semantic Scholar
Systematic Coarse-Grained Lipid Force Fields with Semiexplicit Solvation via Virtual Sites
Alexander J. Pak, Thomas Dannenhoffer-Lafage, J. J. Madsen, G. Voth
2019Journal of Chemical Theory and Computation36 citations Open access
Semantic Scholar
Inverse Conformational Selection in Lipid-Protein Binding.
Amélie Bacle, P. Buslaev, R. García-Fandiño, Fernando Favela-Rosales +15 more
2021Journal of the American Chemical Society31 citations Open access
Semantic Scholar
Membrane interaction of the factor VIIIa discoidin domains in atomistic detail
J. J. Madsen, Y. Ohkubo, G. H. Peters, Johan H. Faber +2 more
2015Biochemistry29 citations Open access
Semantic Scholar
Factor VIII Interacts with the Endocytic Receptor Low-density Lipoprotein Receptor-related Protein 1 via an Extended Surface Comprising “Hot-Spot” Lysine Residues♦
M. van den Biggelaar, J. J. Madsen, Johan H. Faber, Marleen G. Zuurveld +5 more
2015Journal of Biological Chemistry28 citations Open access
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Quantitative Comparison against Experiments Reveals Imperfections in Force Fields’ Descriptions of POPC–Cholesterol Interactions
Matti Javanainen, Peter Heftberger, J. J. Madsen, Markus S. Miettinen +2 more
2023Journal of Chemical Theory and Computation27 citations Open access
Semantic Scholar
Interaction of neurotransmitters with a phospholipid bilayer: a molecular dynamics study.
G. H. Peters, M. Werge, M. N. Elf-Lind, J. J. Madsen +2 more
2014Chemistry and Physics of Lipids27 citations
Semantic Scholar
Highly Coarse-Grained Representations of Transmembrane Proteins
J. J. Madsen, Anton V. Sinitskiy, Jia-Ning Li, G. Voth
2017Journal of Chemical Theory and Computation23 citations Open access
Semantic Scholar
The Potential of 19F NMR Application in GPCR Biased Drug Discovery.
Xu-Dong Wang, Aidan McFarland, J. J. Madsen, Eric Aalo +1 more
2020TIPS - Trends in Pharmacological Sciences22 citations
Semantic Scholar
Tissue factor activates allosteric networks in factor VIIa through structural and dynamic changes
J. J. Madsen, E. Persson, O. Olsen
2015Journal of Thrombosis and Haemostasis22 citations Open access
Semantic Scholar
Cholesterol Alters the Orientation and Activity of the Influenza Virus M2 Amphipathic Helix in the Membrane
A. Martyna, Basma Bahsoun, J. J. Madsen, Frederic St. J. S. Jackson +3 more
2020Journal of Physical Chemistry B21 citations Open access
Semantic Scholar
Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-mediated Allosteric Regulation of Factor VIIa Activity*
A. B. Sørensen, J. J. Madsen, L. Svensson, A. A. Pedersen +4 more
2015Journal of Biological Chemistry21 citations Open access
Semantic Scholar
19F NMR: A promising tool for dynamic conformational studies of G protein-coupled receptors.
Li-Bin Ye, Xu-Dong Wang, Aidan McFarland, J. J. Madsen
2022Structure17 citations Open access
Semantic Scholar
Efficient Simulation of Tunable Lipid Assemblies Across Scales and Resolutions
John M. A. Grime, J. J. Madsen
201917 citations
Semantic Scholar
Secretory phospholipase A2 activity toward diverse substrates.
J. J. Madsen, Lars Linderoth, A. Subramanian, T. Andresen +1 more
2011Journal of Physical Chemistry B14 citations
Semantic Scholar
An in-membrane NMR spectroscopic approach probing native ligand-GPCR interaction.
Xu-Dong Wang, Nabila Bushra, M. Muschol, J. J. Madsen +1 more
2022International Journal of Biological Macromolecules13 citations
Semantic Scholar
Uncovering Membrane-Bound Models of Coagulation Factors by Combined Experimental and Computational Approaches
Y. Ohkubo, J. J. Madsen
2021Thrombosis and Haemostasis13 citations Open access
Semantic Scholar
Small-Angle X-ray Scattering Data in Combination with RosettaDock Improves the Docking Energy Landscape
Pernille Sønderby, Å. Rinnan, J. J. Madsen, P. Harris +2 more
2017Journal of Chemical Information and Modeling13 citations
Semantic Scholar
Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB
M. Sacco, Lauren R. Hammond, R. E. Noor, Dipanwita Bhattacharya +9 more
2022bioRxiv12 citations Open access
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Allostery in Coagulation Factor VIIa Revealed by Ensemble Refinement of Crystallographic Structures.
A. B. Sørensen, J. J. Madsen, T. Frimurer, M. Overgaard +3 more
2019Biophysical Journal11 citations Open access
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Trifluorinated Keto-Enol Tautomeric Switch in Probing Domain Rotation of a G Protein-Coupled Receptor.
Xu-Dong Wang, Wen-Jie Zhao, Sameer Al-Abdul-Wahid, Yiming Lu +3 more
2020Bioconjugate chemistry10 citations
Semantic Scholar
Conformational Plasticity-Rigidity Axis of the Coagulation Factor VII Zymogen Elucidated by Atomistic Simulations of the N-Terminally Truncated Factor VIIa Protease Domain
J. J. Madsen, O. Olsen
2021Biomolecules9 citations Open access
Semantic Scholar
The length of the linker between the epidermal growth factor‐like domains in factor VIIa is critical for a productive interaction with tissue factor
E. Persson, J. J. Madsen, O. Olsen
2014Protein Science7 citations Open access
Semantic Scholar
Theoretical Assessment of Fluorinated Phospholipids in the Design of Liposomal Drug-Delivery Systems.
J. J. Madsen, P. Fristrup, G. H. Peters
2016Journal of Physical Chemistry B6 citations Open access
Semantic Scholar
Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM
J. J. Madsen, Y. Ohkubo
2023bioRxiv4 citations Open access
Semantic Scholar
A systematic approach for evaluating the role of surface-exposed loops in trypsin-like serine proteases applied to the 170 loop in coagulation factor VIIa
A. B. Sørensen, P. Greisen, J. J. Madsen, J. Lund +7 more
2022Scientific Reports4 citations Open access
Semantic Scholar
Water Intake and Water Molecules' Path to the Active Site of Secretory Phospholipase A2 Using MD Simulations and the Tracking Tool AQUA-DUCT.
H. D. Tjørnelund, J. J. Madsen, G. H. Peters
2020Journal of Physical Chemistry B4 citations Open access
Semantic Scholar
The Grime Coarse-Grained Lipid Model
John M. A. Grime, J. J. Madsen
20194 citations
Semantic Scholar
Evolutionary conservation of the allosteric activation of factor VIIa by tissue factor in lamprey: comment
J. J. Madsen, E. Persson, O. Olsen
2018Journal of Thrombosis and Haemostasis4 citations Open access
Semantic Scholar
Tractors and Tractrices in Riemannian Manifolds
J. J. Madsen, S. Markvorsen
20171 citations
Semantic Scholar
Efficient coarse-grained simulations of multiple Piezo channels in flat membrane and vesicles.
Chen-Yun Wen, J. J. Madsen, Yun Lyna Luo
2023Biophysical Journal0 citations
Semantic Scholar
MD simulations of bilayers containing POPC and Cholesterol: 52POPC_76CHL_31Nwat_neutral (lipid14)
J. J. Madsen
20200 citations
Semantic Scholar
MD simulations of bilayers containing POPC and Cholesterol: 64POPC_64CHL_31Nwat_neutral (lipid14)
J. J. Madsen
20200 citations
Semantic Scholar
Tissue-factor induced allosteric enhancement of factor VIIa activity by stabilization of segment 215-219 and taming of W215 flexibility
A. B. Sørensen, J. J. Madsen, A. Svensson, H. Stennicke +4 more
20150 citations
Semantic Scholar
Binding of Neurotransmitters to Lipid Membranes
G. H. Peters, M. Werge, M. N. Elf-Lind, Chunhua Wang +4 more
20140 citations Open access
Semantic Scholar
Enzymatic hydrolysis of cellulose fibers: A computational study
J. J. Madsen, P. Westh, G. H. Peters
20090 citations
Semantic Scholar
Submission PDF Entropic Forces Drive Clustering and Spatial Localization of Inﬂuenza A M2 During Viral Budding
J. J. Madsen, John M. A. Grime, J. Rossman, G. Voth
0 citations
Semantic Scholar

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