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D. Runcie · SciRah

Researcher profile · Semantic Scholar

D. Runcie

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D. Runcie — researcher profile on SciRah

h-index: 25
Works: 89
Citations: 2,134

Most-cited papers

Transcriptional regulation of nitrogen-associated metabolism and growth
Allison Gaudinier, J. Rodriguez-Medina, Li-Fang Zhang, Andrew C. Olson +12 more
2018Nature302 citations Open access
Semantic Scholar
Two teosintes made modern maize
Ning Yang, Yue-Bin Wang, Xiangguo Liu, Min-Liang Jin +26 more
2023bioRxiv122 citations Open access
Semantic Scholar
Expanding genomic prediction in plant breeding: harnessing big data, machine learning, and advanced software.
J. Crossa, J. W. R. Martini, P. Vitale, P. Pérez-Rodríguez +16 more
2025Trends in Plant Science92 citations Open access
Semantic Scholar
Innovation, conservation, and repurposing of gene function in root cell type development.
K. Kajala, Mona Gouran, L. Shaar-Moshe, G. A. Mason +27 more
2021Cell90 citations Open access
Semantic Scholar
Machine learning algorithms translate big data into predictive breeding accuracy.
J. Crossa, O. Montesinos-López, G. Costa-Neto, P. Vitale +13 more
2024Trends in Plant Science86 citations Open access
Semantic Scholar
MegaLMM: Mega-scale linear mixed models for genomic predictions with thousands of traits
D. Runcie, J. Qu, Hao Cheng, L. Crawford
2020Genome Biology83 citations Open access
Semantic Scholar
Genetics of gene expression responses to temperature stress in a sea urchin gene network
D. Runcie, David Garfield, Courtney C. Babbitt, Jennifer A. Wygoda +2 more
2012Molecular Ecology81 citations Open access
Semantic Scholar
The Impact of Gene Expression Variation on the Robustness and Evolvability of a Developmental Gene Regulatory Network
David Garfield, D. Runcie, Courtney C. Babbitt, R. Haygood +2 more
2013PLoS Biology80 citations Open access
Semantic Scholar
Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana
Alejandra Martínez-Berdeja, M. Stitzer, Mark A. Taylor, M. Okada +3 more
2020Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
Semantic Scholar
Dissecting High-Dimensional Phenotypes with Bayesian Sparse Factor Analysis of Genetic Covariance Matrices
D. Runcie, Sayan Mukherjee
2012Genetics75 citations Open access
Semantic Scholar
Fast and flexible linear mixed models for genome-wide genetics
D. Runcie, L. Crawford
2018bioRxiv63 citations Open access
Semantic Scholar
Gene regulatory effects of a large chromosomal inversion in highland maize
Taylor M. Crow, James Ta, Saghi Nojoomi, M. R. Aguilar-Rangel +5 more
2019bioRxiv62 citations Open access
Semantic Scholar
Pitfalls and Remedies for Cross Validation with Multi-trait Genomic Prediction Methods
D. Runcie, Hao Cheng
2019G3: Genes, Genomes, Genetics62 citations Open access
Semantic Scholar
Applying developmental threshold models to evolutionary ecology.
K. Donohue, L. Burghardt, D. Runcie, K. Bradford +1 more
2015Trends in Ecology & Evolution61 citations
Semantic Scholar
The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca).
Jill A. Hamilton, W. El Kayal, Ashley T Hart, D. Runcie +2 more
2016Tree Physiology49 citations
Semantic Scholar
Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations
Hai-Xiao Hu, M. Campbell, T. Yeats, Xu-Ying Zheng +12 more
2021Theoretical and Applied Genetics45 citations Open access
Semantic Scholar
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time
Allison C. Barnes, Fausto Rodríguez-Zapata, Karla A Juárez-Núñez, Daniel J Gates +26 more
2022Proceedings of the National Academy of Sciences of the United States of America42 citations Open access
Semantic Scholar
Analysis of genotype-by-environment interactions in a maize mapping population
Asher I. Hudson, Sarah G. Odell, P. Dubreuil, M. Tixier +3 more
2021bioRxiv42 citations Open access
Semantic Scholar
Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in Arabidopsis thaliana
Mark A. Taylor, A. Wilczek, J. L. Roe, S. Welch +3 more
2019Proceedings of the National Academy of Sciences of the United States of America41 citations Open access
Semantic Scholar
Fluctuating, warm temperatures decrease the effect of a key floral repressor on flowering time in Arabidopsis thaliana.
L. Burghardt, D. Runcie, A. Wilczek, M. Cooper +3 more
2016New Phytologist41 citations Open access
Semantic Scholar
Single-gene resolution of locally adaptive genetic variation in Mexican maize
D. Gates, D. Runcie, Garrett M. Janzen, A. R. Navarro +10 more
2019bioRxiv40 citations Open access
Semantic Scholar
Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize
J. Engelhorn, Samantha J. Snodgrass, Amelie Kok, Arun S. Seetharam +21 more
2024bioRxiv37 citations Open access
Semantic Scholar
Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars
Dominique D. A. Pincot, M. Ledda, Mitchell J. Feldmann, Michael A. Hardigan +6 more
2020bioRxiv34 citations Open access
Semantic Scholar
Social environment influences the relationship between genotype and gene expression in wild baboons
D. Runcie, R. Wiedmann, Elizabeth A. Archie, J. Altmann +3 more
2013Philosophical Transactions of the Royal Society B: Biological Sciences32 citations Open access
Semantic Scholar
VARIABLE PRIORITIZATION IN NONLINEAR BLACK BOX METHODS: A GENETIC ASSOCIATION CASE STUDY
L. Crawford, S. Flaxman, D. Runcie, M. West
2018Annals of Applied Statistics30 citations Open access
Semantic Scholar
Multi-trait genomic-enabled prediction enhances accuracy in multi-year wheat breeding trials
A. Montesinos-López, D. Runcie, M. Ibba, P. Pérez-Rodríguez +4 more
2021G323 citations Open access
Semantic Scholar
Demonstration of local adaptation in maize landraces by reciprocal transplantation
Garrett M. Janzen, M. R. Aguilar-Rangel, Carolina Cíntora-Martínez, Karla Azucena Blöcher-Juárez +7 more
2022Evolutionary Applications21 citations Open access
Semantic Scholar
Genomic Characterization of the Evolutionary Potential of the Sea Urchin Strongylocentrotus droebachiensis Facing Ocean Acidification
D. Runcie, N. Dorey, David Garfield, M. Stumpp +2 more
2016Genome Biology and Evolution21 citations Open access
Semantic Scholar
Translational regulation contributes to the elevated CO2 response in two Solanum species
S. Gray, J. Rodriguez-Medina, Samuel Rusoff, T. Toal +3 more
2019The Plant Journal20 citations Open access
Semantic Scholar
Do not benchmark phenomic prediction against genomic prediction accuracy
Fangyi Wang, Mitchell J. Feldmann, D. Runcie
2025The Plant Phenome Journal18 citations Open access
Semantic Scholar
Special report: AI Institute for next generation food systems (AIFS)
I. Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao +9 more
2022Computers and Electronics in Agriculture18 citations Open access
Semantic Scholar
MegaLMM improves genomic predictions in new environments using environmental covariates
Hai-Xiao Hu, R. Rincent, D. Runcie
2024bioRxiv17 citations Open access
Semantic Scholar
Uneven Distribution of Mutational Variance Across the Transcriptome of Drosophila serrata Revealed by High-Dimensional Analysis of Gene Expression
E. Hine, D. Runcie, Katrina McGuigan, M. Blows
2018Genetics16 citations Open access
Semantic Scholar
Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates
Jacob D. Washburn, J. I. Varela, Alencar Xavier, Qiuyue Chen +55 more
2024bioRxiv15 citations Open access
Semantic Scholar
Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates.
Jacob D. Washburn, J. I. Varela, Alencar Xavier, Qiuyue Chen +55 more
2024Genetics15 citations Open access
Semantic Scholar
Improving predictive ability in sparse testing designs in soybean populations
Reyna Persa, Caio Canella Vieira, E. Rios, V. Hoyos‐Villegas +3 more
2023Frontiers in Genetics15 citations Open access
Semantic Scholar
Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci
Sarah G. Odell, Asher I. Hudson, S. Praud, P. Dubreuil +3 more
2022G314 citations Open access
Semantic Scholar
Environmental data provide marginal benefit for predicting climate adaptation
Forrest Li, Daniel J Gates, E. Buckler, M. Hufford +11 more
2025PLoS Genetics13 citations Open access
Semantic Scholar
Megavariate methods capture complex genotype-by-environment interactions
Alencar Xavier, D. Runcie, D. Habier
2024Genetics13 citations Open access
Semantic Scholar
Demonstration of local adaptation of maize landraces by reciprocal transplantation
Garrett M. Janzen, M. R. Aguilar-Rangel, Carolina Cíntora-Martínez, Karla Azucena Blöcher-Juárez +7 more
2021bioRxiv13 citations Open access
Semantic Scholar
Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance
Jonathan M. Berlingeri, Abelina Fuentes, Earl Ranario, Heesup Yun +17 more
2025Theoretical and Applied Genetics12 citations Open access
Semantic Scholar
Sequence signatures of a recent chromosomal rearrangement in Drosophila mojavensis
D. Runcie, M. Noor
2008Genetica12 citations Open access
Semantic Scholar
Exploring the molecular regulation of vernalization-induced flowering synchrony in Arabidopsis.
Po-Kai Huang, Johanna Schmitt, D. Runcie
2024New Phytologist11 citations Open access
Semantic Scholar
High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions
Baber Ali, Bertrand Huguenin-Bizot, Maxime J Laurent, F. Chaumont +10 more
2024bioRxiv10 citations Open access
Semantic Scholar
Floral signals evolve in a predictable way under artificial and pollinator selection in Brassica rapa
Peng-Juan Zu, F. Schiestl, Daniel D. L. Gervasi, Xin Li +2 more
2019bioRxiv10 citations Open access
Semantic Scholar
Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize
Hai-Xiao Hu, Taylor M. Crow, Saghi Nojoomi, Aimee J. Schulz +7 more
2022bioRxiv9 citations Open access
Semantic Scholar
Innovation, conservation, and repurposing of gene function in root cell type development.
K. Kajala, Mona Gouran, L. Shaar-Moshe, G. A. Mason +27 more
2021Cell7 citations Open access
Semantic Scholar
The utility of environmental data from traditional varieties for climate-adaptive maize breeding
Forrest Li, Daniel J Gates, E. Buckler, M. Hufford +11 more
2024bioRxiv5 citations Open access
Semantic Scholar
Precipitation timing and soil substrate drive phenology and fitness of Arabidopsis thaliana in a Mediterranean environment
Alejandra Martínez-Berdeja, M. Okada, M. Cooper, D. Runcie +2 more
2023Functional Ecology5 citations Open access
Semantic Scholar
Multi-Trait Genomic Prediction Improves Accuracy of Selection among Doubled Haploid Lines in Maize
Hai-Xiao Hu, Yujie Meng, Wen-Xin Liu, Shao-Jiang Chen +1 more
2022International Journal of Molecular Sciences5 citations Open access
Semantic Scholar

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