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K. Ulgen · SciRah

Researcher profile · Semantic Scholar

K. Ulgen

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K. Ulgen — researcher profile on SciRah

h-index: 19
Works: 79
Citations: 2,348

Most-cited papers

Bubble column reactors
Nigar Kantarci, F. Borak, K. Ulgen
20051,134 citations
Semantic Scholar
The stability of enzymes after sonication
B. Özbek, K. Ulgen
2000174 citations
Semantic Scholar
Advances in microfluidic devices made from thermoplastics used in cell biology and analyses.
Elif Gencturk, S. Mutlu, K. Ulgen
2017Biomicrofluidics112 citations Open access
Semantic Scholar
A review on wax printed microfluidic paper-based devices for international health.
S. Altundemir, A. K. Uğuz, K. Ulgen
2017Biomicrofluidics97 citations Open access
Semantic Scholar
Mathematical description of ethanol fermentation by immobilised Saccharomyces cerevisiae
G. Birol, P. Doruker, B. Kirdar, Z. Önsan +1 more
199890 citations
Semantic Scholar
Improvement of ethanol production from starch by recombinant yeast through manipulation of environmental factors
Mehmet M. Altintas, K. Ulgen, B. Kirdar, Z. Önsan +1 more
200253 citations
Semantic Scholar
Screening applications in drug discovery based on microfluidic technology.
P. Eribol, A. K. Uğuz, K. Ulgen
2016Biomicrofluidics47 citations Open access
Semantic Scholar
Metabolic pathway analysis of enzyme-deficient human red blood cells.
Tunahan Çakır, Cemil Serhan Tacer, K. Ulgen
2004Bio Systems44 citations
Semantic Scholar
A systematic methodology for large scale compound screening: A case study on the discovery of novel S1PL inhibitors.
Utku Deniz, Elif Ozkirimli, K. Ulgen
2016Journal of Molecular Graphics and Modelling36 citations
Semantic Scholar
Genome-Scale Metabolic Modeling for Unraveling Molecular Mechanisms of High Threat Pathogens
Mustafa Sertbas, K. Ulgen
2020Frontiers in Cell and Developmental Biology33 citations Open access
Semantic Scholar
Molecular facets of sphingolipids: Mediators of diseases
Fatma Betul Kavun Ozbayraktar, K. Ulgen
2009Biotechnology Journal33 citations
Semantic Scholar
A Study on Hydrodynamics and Heat Transfer in a Bubble Column Reactor with Yeast and Bacterial Cell Suspensions
Nigar Kantarci, K. Ulgen, F. Borak
200831 citations
Semantic Scholar
Applications of 3D Bioprinting Technology to Brain Cells and Brain Tumor Models: Special Emphasis to Glioblastoma
Ilkay Irem Ozbek, H. Saybaşılı, K. Ulgen
2024ACS Biomaterials Science & Engineering30 citations Open access
Semantic Scholar
Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production
Tunahan Çakır, K. Arğa, Mehmet M. Altintas, K. Ulgen
200430 citations
Semantic Scholar
Advances in Genome-Scale Metabolic Modeling toward Microbial Community Analysis of the Human Microbiome.
Elif Esvap, K. Ulgen
2021ACS Synthetic Biology29 citations
Semantic Scholar
Integration of Metabolic Modeling and Phenotypic Data in Evaluation and Improvement of Ethanol Production Using Respiration-Deficient Mutants of Saccharomyces cerevisiae
Duygu Dikicioglu, Pınar Pir, Z. Ilsen Onsan, K. Ulgen +2 more
2008Applied and Environmental Microbiology25 citations Open access
Semantic Scholar
Fabrication of cyclo olefin polymer microfluidic devices for trapping and culturing of yeast cells
Sevde Puza, Elif Gencturk, I. E. Odabasi, Emre Iseri +2 more
2017Biomedical microdevices21 citations
Semantic Scholar
Cybernetic modelling of growth and ethanol production in a recombinant Saccharomyces cerevisiae strain secreting a bifunctional fusion protein
Mehmet M. Altintas, B. Kirdar, Z. Önsan, K. Ulgen
200220 citations
Semantic Scholar
Unlocking Human Brain Metabolism by Genome-Scale and Multiomics Metabolic Models: Relevance for Neurology Research, Health, and Disease
Mustafa Sertbas, K. Ulgen
2018Omics19 citations Open access
Semantic Scholar
Neuroinflammation, Energy and Sphingolipid Metabolism Biomarkers Are Revealed by Metabolic Modeling of Autistic Brains
Elif Esvap, K. Ulgen
2023Biomedicines18 citations Open access
Semantic Scholar
Analysis of Protein Adsorption to Ion Exchangers in a Finite Bath
Maamoun M. Habbaba, K. Ulgen
199717 citations
Semantic Scholar
A Network-Based Approach on Elucidating the Multi-Faceted Nature of Chronological Aging in S. cerevisiae
Esra Borklu Yucel, K. Ulgen
2011PLoS ONE14 citations Open access
Semantic Scholar
Understanding HMF Inhibition on Yeast Growth Coupled with Ethanol Production for the Improvement of Bio-Based Industrial Processes
Elif Gencturk, K. Ulgen
2022Process Biochemistry13 citations
Semantic Scholar
Transcriptional remodeling in response to transfer upon carbon-limited or metformin-supplemented media in S. cerevisiae and its effect on chronological life span
Esra Borklu-Yucel, Serpil Eraslan, K. Ulgen
2015Applied Microbiology and Biotechnology13 citations
Semantic Scholar
Optimal substrate feeding policy for fed-batch cultures of S. cerevisiae expressing bifunctional fusion protein displaying amylolytic activities
Mehmet M. Altintas, K. Ulgen, B. Kirdar, Z. Önsan +1 more
200313 citations
Semantic Scholar
Plasmid stability in a recombinant S cerevisiae strain secreting a bifunctional fusion protein
Mehmet M. Altintas, B. Kirdar, Z. Önsan, K. Ulgen
200113 citations
Semantic Scholar
Quantitative description of protein adsorption by frontal analysis
A. Avci, M. Camurdan, K. Ulgen
200012 citations
Semantic Scholar
Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets
E. Tezcan, Yigit Demirtas, Z. Çakar, K. Ulgen
2023Frontiers in Bioinformatics11 citations Open access
Semantic Scholar
Cell trapping microfluidic chip made of Cyclo olefin polymer enabling two concurrent cell biology experiments with long term durability
Elif Gencturk, Ekin Yurdakul, Ahmet Celik, S. Mutlu +1 more
2020Biomedical microdevices10 citations
Semantic Scholar
Recovery of antithrombin III from milk by expanded bed chromatography.
S. Ozyurt, B. Kirdar, K. Ulgen
2002Journal of Chromatography A10 citations
Semantic Scholar
Recovery of actinorhodin from fermentation broth.
Erdem Güzeltunç, K. Ulgen
2001Journal of Chromatography A10 citations
Semantic Scholar
Investigation of novel pharmacological chaperones for Gaucher Disease.
Buge Yilmazer, Z. Yagci, E. Bakar, Burcu Ozden +2 more
2017Journal of Molecular Graphics and Modelling9 citations
Semantic Scholar
Assessment of crosstalks between the Snf1 kinase complex and sphingolipid metabolism in S. cerevisiae via systems biology approaches.
Esra Borklu Yucel, K. Ulgen
2013Molecular Biosystems8 citations
Semantic Scholar
Thermoplastic microfluidic bioreactors with integrated electrodes to study tumor treating fields on yeast cells.
Elif Gencturk, K. Ulgen, S. Mutlu
2020Biomicrofluidics7 citations Open access
Semantic Scholar
Multiomics Approach to Novel Therapeutic Targets for Cancer and Aging-Related Diseases: Role of Sld7 in Yeast Aging Network
Irem E Dayan, K. Arğa, K. Ulgen
2017Omics7 citations Open access
Semantic Scholar
Modeling of the induced expression for high-level production of a foreign protein by recombinant E. coli under the control of the T7 phage promoter
E. Öner, B. Kirdar, Z. Önsan, K. Ulgen
20037 citations
Semantic Scholar
A structured model for intracellular EcoRI endonuclease production by recombinant E. coli 294
C. Tamerler, K. Ulgen, B. Kirdar, Z. Önsan
20017 citations
Semantic Scholar
Predictive Modeling of Pharmacokinetic Drug–Drug and Herb–Drug Interactions in Oncology: Insights From PBPK Studies
Enes Emre Taş, K. Ulgen
2025International journal of toxicology6 citations Open access
Semantic Scholar
Uncovering the Effect of SARS-CoV-2 on Liver Metabolism via Genome-Scale Metabolic Modeling for Reprogramming and Therapeutic Strategies
Mustafa Sertbas, K. Ulgen
2024ACS Omega6 citations Open access
Semantic Scholar
Carvacrol Enhances the Antimicrobial Potency of Berberine in Bacillus subtilis
Basak Atas, C. Aksoy, F. Avci, N. Sayar +3 more
2022Current Microbiology6 citations Open access
Semantic Scholar
Preliminary Studies on Flow Assisted Propagation of Fluorescent Microbeads in Microfluidic Channels for Molecular Communication Systems
M. Durmaz, Abdurrahman Dilmac, Berk Camli, Elif Gencturk +5 more
2020International Conference on Bio-inspired Information and Communications Technologies6 citations
Semantic Scholar
Sphingosine kinase 1 (SK1) allosteric inhibitors that target the dimerization site
O. Bayraktar, Elif Ozkirimli, K. Ulgen
2017Comput. Biol. Chem.6 citations
Semantic Scholar
Wnt Signaling Network in Homo Sapiens
B. Nalbantoglu, S. D. Tekir, K. Ulgen
20126 citations Open access
Semantic Scholar
Understanding the Link between Inflammasome and Apoptosis through the Response of THP-1 Cells against Drugs Using Droplet-Based Microfluidics
Elif Gencturk, Muge Kasim, B. Morova, A. Kiraz +1 more
2022ACS Omega5 citations Open access
Semantic Scholar
A Drug Repurposing and Protein–Protein Interaction Network Study of Ribosomopathies Using Yeast as a Model System
Ege Ertekin, Elif Gencturk, Muge Kasim, K. Ulgen
2019Omics5 citations
Semantic Scholar
Community Modeling Reveals Disrupted Gut Microbial Secretion in Autism Associated With Redox and Neurometabolic Alterations
Elif Esvap, K. Ulgen
2025Biotechnology Journal4 citations
Semantic Scholar
Exploring Human Brain Metabolism via Genome-Scale Metabolic Modeling with Highlights on Multiple Sclerosis
Mustafa Sertbas, K. Ulgen
2025ACS Chemical Neuroscience4 citations Open access
Semantic Scholar
Alterations in Gut Microbiota–Brain Axis in Major Depressive Disorder as Identified by Machine Learning
Atacan Deniz Oncu, Arzucan Ozgur, K. Ulgen
2025Omics4 citations
Semantic Scholar
Circadian clock crosstalks with autism
Ekin Yurdakul, Y. Barlas, K. Ulgen
2023Brain and Behavior4 citations Open access
Semantic Scholar
Transfer function approach in structured modeling of recombinant yeast utilizing starch
K. Arğa, Tunahan Çakır, Pınar Pir, Nevra Özer +2 more
20044 citations
Semantic Scholar

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