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Massimo Baroni · SciRah

Researcher profile · Semantic Scholar

Massimo Baroni

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Massimo Baroni — researcher profile on SciRah

h-index: 24
Works: 59
Citations: 2,318

Most-cited papers

A Common Reference Framework for Analyzing/Comparing Proteins and Ligands. Fingerprints for Ligands And Proteins (FLAP): Theory and Application
Massimo Baroni, G. Cruciani, Simone Sciabola, Francesca Perruccio +1 more
2007Journal of Chemical Information and Modeling408 citations
Semantic Scholar
Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D‐QSAR Problems
Massimo Baroni, Gabriele Costantino, G. Cruciani, D. Riganelli +2 more
1993361 citations
Semantic Scholar
Predictive ability of regression models. Part I: Standard deviation of prediction errors (SDEP)
G. Cruciani, Massimo Baroni, S. Clementi, G. Costantino +2 more
1992126 citations
Semantic Scholar
Predictive ability of regression models. Part II: Selection of the best predictive PLS model
Massimo Baroni, S. Clementi, G. Cruciani, Gabriele Costantino +2 more
1992121 citations
Semantic Scholar
FLAP: GRID Molecular Interaction Fields in Virtual Screening. Validation using the DUD Data Set
S. Cross, Massimo Baroni, E. Carosati, Paolo Benedetti +1 more
2010Journal of Chemical Information and Modeling101 citations
Semantic Scholar
GRID-Based Three-Dimensional Pharmacophores I: FLAPpharm, a Novel Approach for Pharmacophore Elucidation
S. Cross, Massimo Baroni, Laura Goracci, G. Cruciani
2012Journal of Chemical Information and Modeling84 citations
Semantic Scholar
High-Throughput Virtual Screening of Proteins Using GRID Molecular Interaction Fields
Simone Sciabola, R. Stanton, J. Mills, M. Flocco +4 more
2010Journal of Chemical Information and Modeling79 citations
Semantic Scholar
Indomethacin-based PROTACs as pan-coronavirus antiviral agents
J. Desantis, B. Mercorelli, Marta Celegato, F. Croci +6 more
2021European journal of medicinal chemistry75 citations Open access
Semantic Scholar
BioGPS: Navigating biological space to predict polypharmacology, off‐targeting, and selectivity
L. Siragusa, S. Cross, Massimo Baroni, Laura Goracci +1 more
2015Proteins: Structure, Function, and Bioinformatics74 citations
Semantic Scholar
D-Optimal Designs in QSAR
Massimo Baroni, S. Clementi, G. Cruciani, N. Kettaneh-Wold +1 more
199370 citations
Semantic Scholar
A Pipeline To Enhance Ligand Virtual Screening: Integrating Molecular Dynamics and Fingerprints for Ligand and Proteins
F. Spyrakis, Paolo Benedetti, S. Decherchi, W. Rocchia +5 more
2015Journal of Chemical Information and Modeling65 citations Open access
Semantic Scholar
Peptide studies by means of principal properties of amino acids derived from MIF descriptors
G. Cruciani, Massimo Baroni, E. Carosati, Monica Clementi +2 more
200462 citations
Semantic Scholar
Analytical and computational workflow for in-depth analysis of oxidized complex lipids in blood plasma
Angela Criscuolo, Palina Nepachalovich, Diego Fernando Garcia-del Rio, M. Lange +6 more
2022Nature Communications54 citations Open access
Semantic Scholar
Conformer- and alignment-independent model for predicting structurally diverse competitive CYP2C9 inhibitors.
L. Afzelius, I. Zamora, C. Masimirembwa, A. Karlén +4 more
2004Journal of Medicinal Chemistry48 citations Open access
Semantic Scholar
Exposition and reactivity optimization to predict sites of metabolism in chemicals.
G. Cruciani, Massimo Baroni, Paolo Benedetti, Laura Goracci +1 more
2013Drug Discovery Today : Technologies44 citations
Semantic Scholar
Flavin monooxygenase metabolism: why medicinal chemists should matter.
G. Cruciani, Aurora Valeri, Laura Goracci, R. Pellegrino +2 more
2014Journal of Medicinal Chemistry40 citations
Semantic Scholar
Virtual screening for novel openers of pancreatic K(ATP) channels.
E. Carosati, R. Mannhold, P. Wahl, J. Hansen +4 more
2007Journal of Medicinal Chemistry40 citations Open access
Semantic Scholar
GRID-Based Three-Dimensional Pharmacophores II: PharmBench, a Benchmark Data Set for Evaluating Pharmacophore Elucidation Methods
S. Cross, F. Ortuso, Massimo Baroni, G. Costa +4 more
2012Journal of Chemical Information and Modeling39 citations
Semantic Scholar
Comparison of ligand-based and structure-based 3D-QSAR approaches: a case study on (aryl-)bridged 2-aminobenzonitriles inhibiting HIV-1 reverse transcriptase.
Simone Sciabola, E. Carosati, Massimo Baroni, R. Mannhold
2005Journal of Medicinal Chemistry39 citations Open access
Semantic Scholar
Chemometric studies on the bactericidal activity of quinolones via an extended VolSurf approach.
Giovanni Cianchetta, R. Mannhold, G. Cruciani, Massimo Baroni +1 more
2004Journal of Medicinal Chemistry38 citations
Semantic Scholar
Comparison of Chemometric Models for QSAR
G. Cruciani, Massimo Baroni, D. Bonelli, S. Clementi +2 more
199034 citations
Semantic Scholar
Novel TOPP descriptors in 3D-QSAR analysis of apoptosis inducing 4-aryl-4H-chromenes: comparison versus other 2D- and 3D-descriptors.
Simone Sciabola, E. Carosati, L. Cucurull-Sanchez, Massimo Baroni +1 more
2007Bioorganic & Medicinal Chemistry29 citations
Semantic Scholar
Targeting the Conformational Transitions of MDM2 and MDMX: Insights into Dissimilarities and Similarities of p53 Recognition
A. Macchiarulo, N. Giacchè, A. Carotti, Massimo Baroni +2 more
2008Journal of Chemical Information and Modeling28 citations
Semantic Scholar
From Experiments to a Fast Easy-to-Use Computational Methodology to Predict Human Aldehyde Oxidase Selectivity and Metabolic Reactions.
G. Cruciani, Nicoló Milani, Paolo Benedetti, S. Lepri +6 more
2018Journal of Medicinal Chemistry27 citations Open access
Semantic Scholar
ELIOT: A platform to navigate the E3 pocketome and aid the design of new PROTACs
Tommaso Palomba, Massimo Baroni, S. Cross, G. Cruciani +1 more
2022Chemical Biology and Drug Design23 citations
Semantic Scholar
BioGPS Descriptors for Rational Engineering of Enzyme Promiscuity and Structure Based Bioinformatic Analysis
Valerio Ferrario, L. Siragusa, C. Ebert, Massimo Baroni +3 more
2014PLoS ONE21 citations Open access
Semantic Scholar
An Integrated Machine Learning Model To Spot Peptide Binding Pockets in 3D Protein Screening
Daniela Trisciuzzi, L. Siragusa, Massimo Baroni, G. Cruciani +1 more
2022Journal of Chemical Information and Modeling18 citations
Semantic Scholar
Targeting protein-protein interactions with low molecular weight and short peptide modulators: insights on disease pathways and starting points for drug discovery
Daniela Trisciuzzi, B. Villoutreix, L. Siragusa, Massimo Baroni +2 more
2023Expert Opinion on Drug Discovery17 citations
Semantic Scholar
FLAP: 4‐Point Pharmacophore Fingerprints from GRID
Francesca Perruccio, J. Mason, Simone Sciabola, Massimo Baroni
200616 citations
Semantic Scholar
First virtual screening and experimental validation of inhibitors targeting GES-5 carbapenemase
F. Spyrakis, P. Bellio, A. Quotadamo, P. Linciano +6 more
2019Journal of Computer-Aided Molecular Design15 citations Open access
Semantic Scholar
Molecular Interaction Fields and 3D-QSAR Studies of p53-MDM2 Inhibitors Suggest Additional Features of Ligand-Target Interaction
Cristina Dezi, A. Carotti, Matteo Magnani, Massimo Baroni +4 more
2010Journal of Chemical Information and Modeling13 citations
Semantic Scholar
Between Theory and Practice: Computational/Experimental Integrated Approaches to Understand the Solubility and Lipophilicity of PROTACs.
Andrea Venturi, Stefano Di Bona, J. Desantis, Michela Eleuteri +5 more
2024Journal of Medicinal Chemistry11 citations
Semantic Scholar
Variable selection in PLS analysis
G. Cruciani, S. Clementi, Massimo Baroni
199311 citations
Semantic Scholar
Discovering New Casein Kinase 1d Inhibitors with an Innovative Molecular Dynamics Enabled Virtual Screening Workflow.
Simone Sciabola, Paolo Benedetti, Giulia D'Arrigo, R. Torella +3 more
2018ACS Medicinal Chemistry Letters10 citations Open access
Semantic Scholar
Structure-Based Optimization of 1,2,4-Triazole-3-Thione Derivatives: Improving Inhibition of NDM-/VIM-Type Metallo-β-Lactamases and Synergistic Activity on Resistant Bacteria
M. Bersani, Mariacristina Failla, Filippo Vascon, E. Gianquinto +10 more
2023Pharmaceuticals8 citations Open access
Semantic Scholar
Exploring Ligand Binding Domain Dynamics in the NRs Superfamily
Giulia D'Arrigo, Ida Autiero, E. Gianquinto, L. Siragusa +3 more
2022International Journal of Molecular Sciences8 citations Open access
Semantic Scholar
Getting Insights into Structural and Energetic Properties of Reciprocal Peptide-Protein Interactions
Daniela Trisciuzzi, L. Siragusa, Massimo Baroni, Ida Autiero +2 more
2022Journal of Chemical Information and Modeling8 citations
Semantic Scholar
Identification of small molecules affecting the interaction between human hemoglobin and Staphylococcus aureus IsdB hemophore
M. Cozzi, Mariacristina Failla, E. Gianquinto, S. Kovachka +15 more
2024Scientific Reports7 citations Open access
Semantic Scholar
Playing with Opening and Closing of Heterocycles: Using the Cusmano-Ruccia Reaction to Develop a Novel Class of Oxadiazolothiazinones, Active as Calcium Channel Modulators and P-Glycoprotein Inhibitors
D. Spinelli, R. Budriesi, B. Cosimelli, Elda Severi +12 more
2014Molecules7 citations Open access
Semantic Scholar
Chemometric approach to a QSAR study of peptides behaving as NK-2 receptor antagonists
S. Clementi, G. Cruciani, D. Riganelli, P. Rovero +3 more
19907 citations
Semantic Scholar
Mauro: A Novel Strategy for Optimizing Mixture Properties
S. Clementi, M. Fernandi, Massimo Baroni, Diego Decastri +2 more
20126 citations Open access
Semantic Scholar
CROMATIC: Cross-Relationship Map of Cavities from Coronaviruses
L. Siragusa, Gabriele Menna, Fabrizio Buratta, Massimo Baroni +3 more
2022Journal of Chemical Information and Modeling5 citations
Semantic Scholar
GRID‐Derived Molecular Interaction Fields for Predicting the Site of Metabolism in Human Cytochromes
G. Cruciani, Yasmin Aristei, R. Vianello, Massimo Baroni
20064 citations
Semantic Scholar
GOLPE: An advanced chemometric tool for 3D QSAR problems
Massimo Baroni, Gabriele Costantino, G. Cruciani, D. Riganelli +2 more
19934 citations
Semantic Scholar
Characterization of Protein-Binding Sites and Ligands Using Molecular Interaction Fields
G. Cruciani, E. Carosati, R. Wade, Massimo Baroni
20072 citations
Semantic Scholar
A Common Reference Framework for Analyzing/Comparing Proteins and Ligands. Fingerprints for Liands and Proteins (FLAP): Theory and Application.
Massimo Baroni, G. Cruciani, Simone Sciabola, Francesca Perruccio +1 more
20072 citations
Semantic Scholar
The CARSO procedure in process optimization
Massimo Baroni, Paolo Benedetti, S. Fraternale, F. Scialpi +2 more
20032 citations
Semantic Scholar
RECENT DEVELOPMENTS IN 3D-QSAR METHODOLOGIES
G. Cruciani, S. Clementi, Massimo Baroni, M. Pastor
19982 citations
Semantic Scholar
Selection of informative structures for QSAR studies
S. Clementi, G. Cruciani, Massimo Baroni, B. Skagerberg
19912 citations
Semantic Scholar
Comparison of chemometric methods for QSAR
G. Cruciani, Massimo Baroni, D. Bonelli, S. Clementi +2 more
19902 citations
Semantic Scholar

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Laura Goracci×9
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Paolo Benedetti

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Simone Sciabola×7

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