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L. Flagel · SciRah

Researcher profile · Semantic Scholar

L. Flagel

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L. Flagel — researcher profile on SciRah

h-index: 35
Works: 61
Citations: 5,885

Most-cited papers

Gene duplication and evolutionary novelty in plants.
L. Flagel, J. Wendel
2009New Phytologist867 citations Open access
Semantic Scholar
Evolutionary genetics of genome merger and doubling in plants.
J. Doyle, L. Flagel, A. Paterson, Ryan A. Rapp +3 more
2008Annual Review of Genetics687 citations
Semantic Scholar
Genetic diversity is indispensable for plant breeding to improve crops
Shilpa Swarup, E. Cargill, K. Crosby, L. Flagel +2 more
2020343 citations Open access
Semantic Scholar
Efficient soybean transformation using hygromycin B selection in the cotyledonary-node method
P. Olhoft, L. Flagel, C. Donovan, D. Somers
2003Planta303 citations
Semantic Scholar
Speciation and Introgression between Mimulus nasutus and Mimulus guttatus
Yaniv J. Brandvain, A. Kenney, L. Flagel, G. Coop +1 more
2013bioRxiv266 citations Open access
Semantic Scholar
Homoeolog expression bias and expression level dominance in allopolyploids.
C. Grover, J. Gallagher, E. Szadkowski, Mi-Jeong Yoo +2 more
2012New Phytologist260 citations Open access
Semantic Scholar
Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.
L. Flagel, J. Wendel
2010New Phytologist256 citations Open access
Semantic Scholar
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
L. Flagel, J. Udall, D. Nettleton, J. Wendel
2008BMC Biology255 citations Open access
Semantic Scholar
Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)
B. Chaudhary, L. Flagel, Robert M. Stupar, J. Udall +3 more
2009Genetics237 citations Open access
Semantic Scholar
Development and characterization of the first dsRNA-resistant insect population from western corn rootworm, Diabrotica virgifera virgifera LeConte
C. Khajuria, S. Ivashuta, Elizabeth Wiggins, L. Flagel +16 more
2018PLoS ONE206 citations Open access
Semantic Scholar
The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference
L. Flagel, Yaniv J. Brandvain, D. Schrider
2018bioRxiv201 citations Open access
Semantic Scholar
Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant
R. Hovav, J. Udall, B. Chaudhary, Ryan A. Rapp +2 more
2008Proceedings of the National Academy of Sciences of the United States of America151 citations Open access
Semantic Scholar
Homoeologous nonreciprocal recombination in polyploid cotton.
A. Salmon, L. Flagel, Bao Ying, J. Udall +1 more
2010New Phytologist136 citations
Semantic Scholar
The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism
R. Hovav, J. Udall, B. Chaudhary, E. Hovav +3 more
2008PLoS Genetics128 citations Open access
Semantic Scholar
Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Gene Expression in Developing Fibres of Upland Cotton (gossypium Hirsutum L.) Was Massively Altered by Domestication Gene Expression in Developing Fibres of Upland Cotton (gossypium Hirsutum L.) Was Mass
Ryan A. Rapp, C. Haigler, L. Flagel, R. Hovav +2 more
109 citations
Semantic Scholar
A majority of cotton genes are expressed in single-celled fiber
R. Hovav, J. Udall, E. Hovav, Ryan A. Rapp +2 more
2007Planta105 citations
Semantic Scholar
RNase T2 genes from rice and the evolution of secretory ribonucleases in plants
G. C. Macintosh, Melissa S. Hillwig, A. Meyer, L. Flagel
2010Zeitschrift für Induktive Abstammungs- und Vererbungslehre94 citations
Semantic Scholar
Molecular characterization of Cry1F resistance in fall armyworm, Spodoptera frugiperda from Brazil.
D. Boaventura, J. Ulrich, B. Lueke, Anderson Bolzan +9 more
2019Insect Biochemistry and Molecular Biology91 citations
Semantic Scholar
Mutational disruption of the ABCC2 gene in fall armyworm, Spodoptera frugiperda, confers resistance to the Cry1Fa and Cry1A.105 insecticidal proteins
L. Flagel, Young Wha Lee, H. Wanjugi, Shilpa Swarup +11 more
2018Scientific Reports87 citations Open access
Semantic Scholar
Jeans, Genes, and Genomes: Cotton as a Model for Studying Polyploidy
J. Wendel, L. Flagel, K. Adams
201282 citations
Semantic Scholar
Rapid molecular evolution across amniotes of the IIS/TOR network
S. McGaugh, A. Bronikowski, Chih-Horng Kuo, Dawn M. Reding +4 more
2015Proceedings of the National Academy of Sciences of the United States of America66 citations Open access
Semantic Scholar
Parallel Domestication, Convergent Evolution and Duplicated Gene Recruitment in Allopolyploid Cotton
R. Hovav, B. Chaudhary, J. Udall, L. Flagel +1 more
2008Genetics66 citations Open access
Semantic Scholar
Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
J. Gichuhi, Sevgan Subramanian, F. Khamis, J. van den Berg +366 more
2019bioRxiv65 citations Open access
Semantic Scholar
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)
Y. Bao, Guan-Jing Hu, L. Flagel, A. Salmon +4 more
2011Proceedings of the National Academy of Sciences of the United States of America65 citations Open access
Semantic Scholar
Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)
B. Chaudhary, R. Hovav, L. Flagel, R. Mittler +1 more
2009BMC Genomics65 citations Open access
Semantic Scholar
Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Duplicate Gene Revolution, Homoeologous Recombination, and Transcriptome Characterization in Allopolyploid Cotton Duplicate Gene Evolution, Homoeologous Recombination, and Transcriptome Characterization
L. Flagel, J. Wendel, J. Udall
64 citations
Semantic Scholar
T-DNA locus structure in a large population of soybean plants transformed using the Agrobacterium-mediated cotyledonary-node method.
P. Olhoft, L. Flagel, D. Somers
2004Plant Biotechnology Journal57 citations
Semantic Scholar
Spotted cotton oligonucleotide microarrays for gene expression analysis
J. Udall, L. Flagel, F. Cheung, Andrew W. Woodward +9 more
2007BMC Genomics50 citations Open access
Semantic Scholar
The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus
L. Flagel, John H. Willis, T. Vision
2013Genome Biology and Evolution49 citations Open access
Semantic Scholar
Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea.
L. Flagel, Ryan A. Rapp, C. Grover, M. Widrlechner +5 more
2008American-Eurasian journal of botany48 citations Open access
Semantic Scholar
Evidence of Natural Selection Acting on a Polymorphic Hybrid Incompatibility Locus in Mimulus
A. Sweigart, L. Flagel
2014Genetics43 citations Open access
Semantic Scholar
Evaluating maize phenotypic variance, heritability, and yield relationships at multiple biological scales across agronomically relevant environments.
S. Tucker, F. Dohleman, D. Grapov, L. Flagel +11 more
2019Plant, Cell and Environment41 citations Open access
Semantic Scholar
Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton.
L. Flagel, Li-Ping Chen, B. Chaudhary, J. Wendel
2009Journal of Heredity40 citations Open access
Semantic Scholar
The utility of genomic prediction models in evolutionary genetics
S. McGaugh, A. Lorenz, L. Flagel
2021Proceedings of the Royal Society B37 citations Open access
Semantic Scholar
Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias
Lin Li, R. Briskine, R. Schaefer, P. Schnable +4 more
2016BMC Genomics35 citations Open access
Semantic Scholar
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton
L. Flagel, J. Wendel, J. Udall
2012BMC Genomics35 citations Open access
Semantic Scholar
Genetic Markers for Western Corn Rootworm Resistance to Bt Toxin
L. Flagel, Shilpa Swarup, Mao Chen, C. Bauer +10 more
2015G3: Genes, Genomes, Genetics33 citations Open access
Semantic Scholar
Western corn rootworm (Diabrotica virgifera virgifera) transcriptome assembly and genomic analysis of population structure
L. Flagel, R. Bansal, R. Kerstetter, Mao Chen +5 more
2014BMC Genomics31 citations Open access
Semantic Scholar
Phenetic comparison of sevenEchinacea species based on immunomodulatory characteristics
D. Senchina, L. Flagel, J. Wendel, M. Kohut
2006Economic Botany26 citations Open access
Semantic Scholar
GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity
L. Flagel, Benjamin K. Blackman, L. Fishman, P. Monnahan +2 more
2019PLoS Comput. Biol.25 citations Open access
Semantic Scholar
Variance component estimates, phenotypic characterization, and genetic evaluation of bovine congestive heart failure in commercial feeder cattle
J. W. Buchanan, L. Flagel, M. MacNeil, Ashley R. Nilles +3 more
2023bioRxiv13 citations Open access
Semantic Scholar
IntroUNET: identifying introgressed alleles via semantic segmentation
Dylan D. Ray, L. Flagel, D. Schrider
2023bioRxiv13 citations Open access
Semantic Scholar
IntroUNET: Identifying introgressed alleles via semantic segmentation
Dylan D. Ray, L. Flagel, D. Schrider
2024PLoS Genetics10 citations Open access
Semantic Scholar
The First Ten Years of Plant Genome Sequencing and Prospects for the Next Decade
L. Flagel, Benjamin K. Blackman
201210 citations
Semantic Scholar
The effects of reference panel perturbations on the accuracy of genotype imputation
Jeremiah H. Li, Andrew Liu, C. A. Buerkle, William J. Palmer +4 more
2023bioRxiv7 citations Open access
Semantic Scholar
Inexpensive, high throughput microplate format for plant nucleic acid extraction : Suitable for multiplex southern analyses of transgenes
L. Flagel, J. R. Christensen, C. Gustus, Kevin P. Smith +3 more
20055 citations
Semantic Scholar
Responses of the Cotton Genome to Polyploidy
K. Adams, L. Flagel, J. Wendel
20094 citations
Semantic Scholar
Chronosequence of invasion reveals minimal losses of population genomic diversity, niche expansion, and trait divergence in the polyploid, leafy spurge
Thomas A. Lake, Ryan D. Briscoe Runquist, L. Flagel, D. A. Moeller
2023Evolutionary Applications3 citations Open access
Semantic Scholar
Estimation of Cry3Bb1 resistance allele frequency in field populations of western corn rootworm using a genetic marker
A. Willse, L. Flagel, G. Head
2021G33 citations Open access
Semantic Scholar
A synthesis of mapping experiments reveals extensive genomic structural diversity in the Mimulus guttatus species complex
L. Flagel, Benjamin K. Blackman, L. Fishman, P. Monnahan +2 more
2018bioRxiv1 citations Open access
Semantic Scholar

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