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J. Shuga · SciRah

Researcher profile · Semantic Scholar

J. Shuga

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J. Shuga — researcher profile on SciRah

h-index: 18
Works: 35
Citations: 11K

Most-cited papers

Massively parallel digital transcriptional profiling of single cells
Grace X. Y. Zheng, Jessica M. Terry, P. Belgrader, P. Ryvkin +29 more
2016Nature Communications5,478 citations Open access
Semantic Scholar
Single cell RNA Seq reveals dynamic paracrine control of cellular variation
A. Shalek, R. Satija, J. Shuga, John J. Trombetta +18 more
2014Nature998 citations Open access
Semantic Scholar
Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
T. Nowakowski, A. Bhaduri, A. Pollen, Beatriz Alvarado +14 more
2017Science912 citations Open access
Semantic Scholar
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
A. Pollen, T. Nowakowski, J. Shuga, Xiao-Hui Wang +26 more
2014Nature Biotechnology905 citations Open access
Semantic Scholar
Molecular Identity of Human Outer Radial Glia During Cortical Development
A. Pollen, T. Nowakowski, Jiadong Chen, H. Retallack +10 more
2015Cell820 citations Open access
Semantic Scholar
Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution
A. Pollen, A. Bhaduri, M. Andrews, T. Nowakowski +18 more
2018bioRxiv525 citations Open access
Semantic Scholar
High-Performance Single Cell Genetic Analysis Using Microfluidic Emulsion Generator Arrays
Yong Zeng, R. Novák, J. Shuga, Martyn T. Smith +1 more
2010Analytical Chemistry231 citations Open access
Semantic Scholar
Analysis of individual cells identifies cell‐to‐cell variability following induction of cellular senescence
Christopher D. Wiley, J. M. Flynn, Christapher S. Morrissey, R. Lebofsky +6 more
2017Aging Cell222 citations Open access
Semantic Scholar
Single Cell Multiplex Gene Detection and Sequencing Using Microfluidically-Generated Agarose Emulsions
R. Novák, Yong Zeng, J. Shuga, Gautham Venugopalan +3 more
2011Angewandte Chemie149 citations Open access
Semantic Scholar
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
Li Tai Fang, Bin Zhu, Yong-Mei Zhao, Wan-Qiu Chen +75 more
2021Nature Biotechnology103 citations Open access
Semantic Scholar
The Space Omics and Medical Atlas (SOMA) and international astronaut biobank
Eliah G. Overbey, Jangkeun Kim, Braden T. Tierney, Jiwoon Park +105 more
2024Nature91 citations Open access
Semantic Scholar
In vitro erythropoiesis from bone marrow-derived progenitors provides a physiological assay for toxic and mutagenic compounds
J. Shuga, Jing Zhang, L. Samson, H. Lodish +1 more
2007Proceedings of the National Academy of Sciences of the United States of America57 citations Open access
Semantic Scholar
Integrated Molecular Analysis Indicates Undetectable Change in DNA Damage in Mice after Continuous Irradiation at ~ 400-fold Natural Background Radiation
W. Olipitz, Dominika M. Wiktor-Brown, J. Shuga, Bo Pang +9 more
2012Environmental Health Perspectives50 citations Open access
Semantic Scholar
Single molecule quantitation and sequencing of rare translocations using microfluidic nested digital PCR
J. Shuga, Yong Zeng, R. Novák, Q. Lan +8 more
2013Nucleic Acids Research41 citations Open access
Semantic Scholar
Bone marrow genotoxicity of 2,5‐dimethylfuran, a green biofuel candidate
Michele Fromowitz, J. Shuga, Antonio Yip Wlassowsky, Z. Ji +4 more
2012Environmental and Molecular Mutagenesis31 citations
Semantic Scholar
Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
N. Ramalingam, B. Fowler, L. Szpankowski, A. Leyrat +33 more
2016Frontiers in Bioengineering and Biotechnology22 citations Open access
Semantic Scholar
Joint single cell DNA-Seq and RNA-Seq of gastric cancer reveals subclonal signatures of genomic instability and gene expression
Noemi Andor, Billy T. Lau, C. Catalanotti, Vijay Kumar +31 more
2018bioRxiv20 citations Open access
Semantic Scholar
Selected technologies for measuring acquired genetic damage in humans
J. Shuga, Yong Zeng, R. Novák, R. Mathies +2 more
2010Environmental and Molecular Mutagenesis19 citations
Semantic Scholar
Modulation of Ras signaling alters the toxicity of hydroquinone, a benzene metabolite and component of cigarette smoke
Matthew North, J. Shuga, Michele Fromowitz, A. Loguinov +4 more
2014BMC Cancer16 citations Open access
Semantic Scholar
SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization
Mikio Shiga, S. Seno, Makoto Onizuka, H. Matsuda +313 more
2020bioRxiv15 citations Open access
Semantic Scholar
Utilizing functional genomics in yeast to discover novel biomarkers of benzene toxicity in humans
Matthew North, J. Shuga, A. Loguinov, V. Tandon +3 more
20094 citations
Semantic Scholar
Corrigendum: Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
N. Ramalingam, B. Fowler, L. Szpankowski, A. Leyrat +33 more
2017Frontiers in Bioengineering and Biotechnology3 citations Open access
Semantic Scholar
Abstract 1440: GEM-X Universal Multiplex: a cost-effective, sample agnostic multiplexing solution for scRNA-seq in cancer research
Jui-Szu Chen, Sunny L. Yang, J. Shuga, Winnia Hui +7 more
2025Cancer Research1 citations
Semantic Scholar
ENHANCING HISTOLOGICAL TISSUE AND CELL CHARACTERIZATION WITH SIMULTANEOUS GENE EXPRESSION AND PROTEIN MEASUREMENTS
C. Uytingco, J. Chew, R. Spalinskas, Yifeng Yin +18 more
2022Journal of Pathology Informatics0 citations Open access
Semantic Scholar
Tumor Microenvironment Characterization using a Spatial Multiomic Assay to Simultaneously Profile Protein and Gene Expression in FFPE Tumors
J. Chew, C. Uytingco, Naishitha Anaparthy, Jun Chiang +18 more
2022The FASEB Journal0 citations
Semantic Scholar
Abstract 3814: Multiomic characterization of the tumor microenvironment in FFPE tissue by simultaneous protein and gene expression profiling
C. Uytingco, J. Chew, Naishitha Anaparthy, Jun Chiang +17 more
2022Cancer Research0 citations
Semantic Scholar
Abstract LB206: Simultaneous single cell profiling of open chromatin and gene expression in B cell lymphoma highlights tumor-specific regulatory networks
Shamoni Maheshwari, Li Wang, Vijay Gopalan, J. Shuga +2 more
2021Molecular and Cellular Biology/Genetics0 citations
Semantic Scholar
83 Spatially resolved transcriptomic and proteomic investigation of breast cancer and its immune microenvironment
J. Chew, Cedric Uytingco, Rapolas Spalinskas, Yifeng Yin +18 more
2021Journal for ImmunoTherapy of Cancer0 citations Open access
Semantic Scholar
Abstract 3395: A scalable microfluidic platform for determining cellular heterogeneity by copy number detection
A. Price, J. Sorenson, K. Belhocine, C. Catalanotti +15 more
2018Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Author's response to reviews Title:Modulation of Ras Signaling Alters the Toxicity of Hydroquinone, a Benzene Metabolite and Component of Cigarette Smoke Authors:
J. Shuga, J. Shuga, A. Loguinov
20130 citations
Semantic Scholar
Assessment of genetic damage in healthy and diseased tissue.
J. Shuga, P. Hainaut, Martyn T. Smith
2011IARC scientific publications0 citations
Semantic Scholar
MICRODROPLET EMULSION GENERATOR ARRAYS FOR HIGH- THROUGHPUT SINGLE CELL GENETIC VARIATION ANALYSIS
R. Novák, Yong Zeng, J. Shuga, Gautham Venugopalan +4 more
20100 citations
Semantic Scholar
Application of in vitro erythropoiesis from bone marrow derived progenitors to detect and study genotoxicity
J. Shuga
20070 citations
Semantic Scholar
Test de micronoyau sur erythroide in vitro pour genotoxicite
J. Shuga, Linda G. Griffith, Harvey F. Lodish, L. Samson +2 more
20060 citations
Semantic Scholar

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