Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

A. Ertürk · SciRah

Researcher profile · Semantic Scholar

A. Ertürk

Share profile

A. Ertürk — researcher profile on SciRah

h-index: 40
Works: 134
Citations: 8,065

Most-cited papers

Shrinkage-mediated imaging of entire organs and organisms using uDISCO
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz +6 more
2016Nature Methods560 citations Open access
Semantic Scholar
Tissue clearing and its applications in neuroscience
H. Ueda, A. Ertürk, Kwanghun Chung, V. Gradinaru +3 more
2020Nature Reviews Neuroscience539 citations Open access
Semantic Scholar
Loss of TREM2 function increases amyloid seeding but reduces plaque associated ApoE
S. Parhizkar, T. Arzberger, M. Brendel, G. Kleinberger +25 more
2019Nature Neuroscience491 citations Open access
Semantic Scholar
Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, M. Todorov +18 more
2018Nature Neuroscience431 citations Open access
Semantic Scholar
Machine learning analysis of whole mouse brain vasculature
M. Todorov, J. Paetzold, Oliver Schoppe, Giles Tetteh +8 more
2020Nature Methods317 citations Open access
Semantic Scholar
Cellular and Molecular Probing of Intact Human Organs
Shan Zhao, M. Todorov, Ruiyao Cai, Rami Maskari +19 more
2020Cell259 citations Open access
Semantic Scholar
An ocular glymphatic clearance system removes β-amyloid from the rodent eye
Xiaowei Wang, Nanhong Lou, Allison Eberhardt, Yujia Yang +14 more
2020Science Translational Medicine233 citations Open access
Semantic Scholar
Neuroimmune cardiovascular interfaces control atherosclerosis
Sarajo K. Mohanta, Li Peng, Yuan-Fang Li, Shu Lu +38 more
2022Nature201 citations Open access
Semantic Scholar
Deep learning reveals cancer metastasis and therapeutic antibody targeting in the entire body
Chenchen Pan, Oliver Schoppe, Arnaldo Parra-Damas, Ruiyao Cai +23 more
2019Cell178 citations Open access
Semantic Scholar
TISSUE CLEARING
Douglas S. Richardson, Webster Guan, K. Matsumoto, Chenchen Pan +4 more
2021Nature Reviews Methods Primers172 citations Open access
Semantic Scholar
Spatial proteomics in three-dimensional intact specimens.
H. Bhatia, Andreas-David Brunner, F. Öztürk, Saketh Kapoor +27 more
2022Cell123 citations Open access
Semantic Scholar
The choroid plexus is a key cerebral invasion route for T cells after stroke
G. Llovera, Corinne Benakis, Gaby U. Enzmann, Ruiyao Cai +14 more
2017Acta Neuropathologica109 citations Open access
Semantic Scholar
Obesity-associated hyperleptinemia alters the gliovascular interface of the hypothalamus to promote hypertension
T. Gruber, Chenchen Pan, Raian E. Contreras, Tobias Wiedemann +23 more
2021Cell Metabolism101 citations Open access
Semantic Scholar
Whole-body cellular mapping in mouse using standard IgG antibodies
Hong-Cheng Mai, Jie Luo, L. Hoeher, R. Al-Maskari +10 more
2023Nature Biotechnology100 citations Open access
Semantic Scholar
Deep learning-enabled multi-organ segmentation in whole-body mouse scans
Oliver Schoppe, Chenchen Pan, Javier Coronel, Hong-Cheng Mai +7 more
2020Nature Communications93 citations Open access
Semantic Scholar
Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19.
Zhouyi Rong, Hong-Cheng Mai, Gregor Ebert, S. Kapoor +44 more
2024Cell Host and Microbe90 citations Open access
Semantic Scholar
A guidebook for DISCO tissue clearing
Muge Molbay, Z. I. Kolabas, M. Todorov, Tzu-Lun Ohn +1 more
2021Molecular Systems Biology88 citations Open access
Semantic Scholar
Immune-mediated denervation of the pineal gland underlies sleep disturbance in cardiac disease
Karin A. Ziegler, A. Ahles, A. Dueck, Dena Esfandyari +18 more
2023Science74 citations
Semantic Scholar
Whole-mouse clearing and imaging at the cellular level with vDISCO
Ruiyao Cai, Z. I. Kolabas, Chenchen Pan, Hong-Cheng Mai +10 more
2023Nature Protocols73 citations Open access
Semantic Scholar
Fc-engineered large molecules targeting blood-brain barrier transferrin receptor and CD98hc have distinct central nervous system and peripheral biodistribution
Nathalie Khoury, Michelle E. Pizzo, Claire B. Discenza, David Joy +30 more
2025Nature Communications61 citations Open access
Semantic Scholar
Scalable tissue labeling and clearing of intact human organs
Hong-Cheng Mai, Zhouyi Rong, Shan Zhao, Ruiyao Cai +3 more
2022Nature Protocols55 citations
Semantic Scholar
Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples
Nikita Vladimirov, Fabian F. Voigt, Thomas Naert, Gabriela R. Araujo +19 more
2024Nature Communications53 citations Open access
Semantic Scholar
Development of a hydrology and water quality model for a large transboundary river watershed to investigate the impacts of climate change – A SWAT application
Natalja Čerkasova, G. Umgiesser, A. Ertürk
2018Ecological Engineering: The Journal of Ecotechnology51 citations
Semantic Scholar
Probe set selection for targeted spatial transcriptomics
L. B. Kuemmerle, M. Luecken, A. Firsova, Lisa Barros de Andrade e Sousa +17 more
2022bioRxiv50 citations Open access
Semantic Scholar
An inhibitory antibody targeting carbonic anhydrase XII abrogates chemoresistance and significantly reduces lung metastases in an orthotopic breast cancer model in vivo
Bettina von Neubeck, Gabor Gondi, C. Riganti, Chenchen Pan +4 more
2018International Journal of Cancer48 citations Open access
Semantic Scholar
Virtual reality-empowered deep-learning analysis of brain cells
Doris Kaltenecker, R. Al-Maskari, M. Negwer, L. Hoeher +15 more
2024Nature Methods35 citations Open access
Semantic Scholar
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience
J. Paetzold, J. McGinnis, Suprosanna Shit, I. Ezhov +8 more
2021NeurIPS Datasets and Benchmarks34 citations
Semantic Scholar
Deep 3D histology powered by tissue clearing, omics and AI
A. Ertürk
2024Nature Methods33 citations
Semantic Scholar
Graph neural networks learn emergent tissue properties from spatial molecular profiles
Mayar Ali, S. Richter, A. Ertürk, David S. Fischer +1 more
2022bioRxiv29 citations Open access
Semantic Scholar
3D high resolution generative deep-learning network for fluorescence microscopy imaging.
Hang Zhou, Ruiyao Cai, T. Quan, Shijie Liu +4 more
2020Optics Letters28 citations Open access
Semantic Scholar
Functional liver genomics identifies hepatokines promoting wasting in cancer cachexia.
Doris Kaltenecker, Søren Fisker Schmidt, Peter Weber, A. Loft +27 more
2025Cell24 citations Open access
Semantic Scholar
Modelling framework for flow, sediments and nutrient loads in a large transboundary river watershed: A climate change impact assessment of the Nemunas River watershed
Natalja Čerkasova, G. Umgiesser, A. Ertürk
2021Journal of Hydrology24 citations Open access
Semantic Scholar
Automated analysis of whole brain vasculature using machine learning
M. Todorov, J. Paetzold, Oliver Schoppe, Giles Tetteh +7 more
2019bioRxiv24 citations Open access
Semantic Scholar
Aquaporin 1 and the Na+/K+/2Cl− cotransporter 1 are present in the leptomeningeal vasculature of the adult rodent central nervous system
Qianliang Li, Nadia Aalling, Benjamin Förstera, A. Ertürk +3 more
2020Fluids and Barriers of the CNS23 citations Open access
Semantic Scholar
The state of brain activity modulates cerebrospinal fluid transport.
L. Miyakoshi, F. Stæger, Qianliang Li, Chenchen Pan +7 more
2023Progress in neurobiology22 citations
Semantic Scholar
Perfusion pressure determines vascular integrity and histomorphological quality following perfusion fixation of the brain.
Susanne M Schwarzmaiera, Maximilian R.O. Knarr, Senbin Hu, A. Ertürk +2 more
2022Journal of Neuroscience Methods22 citations Open access
Semantic Scholar
Proteomics of mouse brain endothelium uncovers dysregulation of vesicular transport pathways during aging
Katalin Todorov-Völgyi, Judit González-Gallego, Stephan A. Müller, Nathalie Beaufort +14 more
2024Nature Aging21 citations
Semantic Scholar
Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, M. Todorov +14 more
2018bioRxiv20 citations Open access
Semantic Scholar
Deciphering sources of PET signals in the tumor microenvironment of glioblastoma at cellular resolution
L. Bartos, S. Kirchleitner, Z. I. Kolabas, S. Quach +32 more
2023Science Advances17 citations Open access
Semantic Scholar
Assessing Climate Change Impacts on Streamflow, Sediment and Nutrient Loadings of the Minija River (Lithuania): A Hillslope Watershed Discretization Application with High-Resolution Spatial Inputs
Natalja Čerkasova, G. Umgiesser, A. Ertürk
2019Water17 citations Open access
Semantic Scholar
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph)
J. Paetzold, J. McGinnis, Suprosanna Shit, I. Ezhov +8 more
2021arXiv.org16 citations Open access
Semantic Scholar
Selective plasticity of callosal neurons in the adult contralesional cortex following murine traumatic brain injury
L. Empl, Alexandra Chovsepian, Maryam Chahin, W. Kan +15 more
2022Nature Communications15 citations Open access
Semantic Scholar
Deep learning reveals cancer metastasis and therapeutic antibody targeting in whole body
Chenchen Pan, Oliver Schoppe, Arnaldo Parra-Damas, Ruiyao Cai +10 more
2019bioRxiv15 citations Open access
Semantic Scholar
De novo H3.3K27M-altered diffuse midline glioma in human brainstem organoids to dissect GD2 CAR T cell function
N. Bessler, A. Wezenaar, H. Ariese, C. Honhoff +27 more
2026Nature Cancer13 citations Open access
Semantic Scholar
SARS-CoV-2 Spike Protein Accumulation in the Skull-Meninges-Brain Axis: Potential Implications for Long-Term Neurological Complications in post-COVID-19
Zhouyi Rong, Hong-Cheng Mai, Saketh Kapoor, Victor G. Puelles +26 more
2023bioRxiv13 citations Open access
Semantic Scholar
Seeing whole-tumour heterogeneity
B. Garvalov, A. Ertürk
2017Nature Biomedical Engineering12 citations
Semantic Scholar
Coupled hydrological and hydrodynamic modelling application for climate change impact assessment in the Nemunas river watershed–Curonian Lagoon–southeastern Baltic Sea continuum
Rasa Idzelytė, Natalja Čerkasova, Jovita Mėžinė, Toma Dabulevičienė +3 more
2023Ocean Science (OS)10 citations Open access
Semantic Scholar
Contrasting the Water Quality and Bacterial Community Patterns in Shallow and Deep Lakes: Manyas vs. Iznik
E. Ozbayram, Latife Köker, Reyhan Akçaalan, F. Aydın +3 more
2020Environmental Management10 citations
Semantic Scholar
Exploring variability in climate change projections on the Nemunas River and Curonian Lagoon: coupled SWAT and SHYFEM modeling approach
Natalja Čerkasova, Jovita Mėžinė, Rasa Idzelytė, J. Lesutienė +2 more
2024Ocean Science (OS)9 citations Open access
Semantic Scholar
Mapping of neuroinflammation-induced hypoxia in the spinal cord using optoacoustic imaging
Marta Ramos-Vega, P. Kjellman, M. Todorov, T. Kylkilahti +4 more
2022Acta Neuropathologica Communications9 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

M. Todorov×18
Invite
M. Todorov — researcher profile on SciRah
Ruiyao Cai×12
Invite
Ruiyao Cai — researcher profile on SciRah
Bjoern H Menze×12
Invite
Bjoern H Menze — researcher profile on SciRah
Chenchen Pan×11
Invite
Chenchen Pan — researcher profile on SciRah

×9

Invite

Hong-Cheng Mai — researcher profile on SciRah

Invite

J. Paetzold — researcher profile on SciRah

Invite

Zhouyi Rong — researcher profile on SciRah

Alireza Ghasemigharagoz×7

Invite

Alireza Ghasemigharagoz — researcher profile on SciRah

Invite

Shan Zhao — researcher profile on SciRah

Benjamin Förstera×6

Invite

Benjamin Förstera — researcher profile on SciRah

Oliver Schoppe×6

Invite

Oliver Schoppe — researcher profile on SciRah

Z. I. Kolabas×6

Invite

Z. I. Kolabas — researcher profile on SciRah