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Krutika S. Gaonkar · SciRah

Researcher profile · Semantic Scholar

Krutika S. Gaonkar

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Krutika S. Gaonkar — researcher profile on SciRah

h-index: 14
Works: 42
Citations: 1,135

Most-cited papers

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
F. Petralia, N. Tignor, B. Reva, M. Koptyra +140 more
2020Cell275 citations Open access
Semantic Scholar
Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes
G. Lomberk, Y. Blum, R. Nicolle, Asha A. Nair +29 more
2018Nature Communications241 citations Open access
Semantic Scholar
Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design
J. L. Rokita, K. Rathi, Maria F. Cardenas, Kristen A. Upton +65 more
2019Cell Reports140 citations Open access
Semantic Scholar
CARM1-expressing ovarian cancer depends on the histone methyltransferase EZH2 activity
S. Karakashev, Heng-Rui Zhu, Shuai Wu, Yuhki Yokoyama +11 more
2018Nature Communications91 citations Open access
Semantic Scholar
OpenPBTA: The Open Pediatric Brain Tumor Atlas
Joshua A. Shapiro, Krutika S. Gaonkar, S. Spielman, Candace Savonen +62 more
2023Cell Genomics62 citations Open access
Semantic Scholar
Upfront Biology-Guided Therapy in Diffuse Intrinsic Pontine Glioma: Therapeutic, Molecular, and Biomarker Outcomes from PNOC003
C. Kline, P. Jain, L. Kilburn, E. Bonner +24 more
2022Clinical Cancer Research45 citations Open access
Semantic Scholar
Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality
Mai T. Dang, Michael V. Gonzalez, Krutika S. Gaonkar, K. Rathi +18 more
2021Cell Reports38 citations Open access
Semantic Scholar
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium
Heba Ijaz, M. Koptyra, Krutika S. Gaonkar, J. L. Rokita +22 more
2019bioRxiv35 citations Open access
Semantic Scholar
Postnatal Ontogenesis of the Islet Circadian Clock Plays a Contributory Role in β-Cell Maturation Process
Kuntol Rakshit, J. Qian, Krutika S. Gaonkar, S. Dhawan +2 more
2018Diabetes30 citations Open access
Semantic Scholar
Myosin-1E interacts with FAK proline-rich region 1 to induce fibronectin-type matrix
J. B. Heim, Edwin J. Squirewell, A. Neu, G. Zocher +17 more
2017Proceedings of the National Academy of Sciences of the United States of America30 citations Open access
Semantic Scholar
A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease
Gavin R. Oliver, Xiao-Jia Tang, Laura E. Schultz-Rogers, Noemi Vidal-Folch +9 more
2019PLoS ONE28 citations Open access
Semantic Scholar
HDAC3 restrains CD8-lineage genes to maintain a bi-potential state in CD4+CD8+ thymocytes for CD4-lineage commitment
Rachael L. Philips, Jeong-Heon Lee, Krutika S. Gaonkar, Pritha Chanana +5 more
2019eLife26 citations Open access
Semantic Scholar
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
Krutika S. Gaonkar, F. Marini, K. Rathi, P. Jain +12 more
2019BMC Bioinformatics17 citations Open access
Semantic Scholar
RET receptor expression and interaction with TRK receptors in neuroblastomas.
L. Tetri, V. Kolla, R. L. Golden, Radhika Iyer +9 more
2020Oncology Report16 citations Open access
Semantic Scholar
The Open Pediatric Cancer Project
Zhuang-Zhuang Geng, Eric K. Wafula, Ryan J. Corbett, Yuan-Chao Zhang +45 more
2024bioRxiv15 citations Open access
Semantic Scholar
Alternative lengthening of telomeres (ALT) in pediatric high-grade gliomas can occur without ATRX mutation and is enriched in patients with pathogenic germline mismatch repair (MMR) variants
Jennifer Stundon, Heba Ijaz, Krutika S. Gaonkar, Rebecca S. Kaufman +19 more
2022bioRxiv14 citations Open access
Semantic Scholar
Harmonization of postmortem donations for pediatric brain tumors and molecular characterization of diffuse midline gliomas
M. Kambhampati, E. Panditharatna, S. Yadavilli, Karim Saoud +23 more
2020Scientific Reports9 citations Open access
Semantic Scholar
An Open Pediatric Brain Tumor Atlas
Joshua A. Shapiro, Candace Savonen, Chante J. Bethell, Krutika S. Gaonkar +32 more
20206 citations
Semantic Scholar
Identification of factors associated with duplicate rate in ChIP-seq data
Shu-Lan Tian, Shu-Xia Peng, Michael T. Kalmbach, Krutika S. Gaonkar +5 more
2019PLoS ONE5 citations Open access
Semantic Scholar
Structure based energy calculation to determine the regulation of G protein signalling by RGS and RGS-G protein interaction specificity
Gavish Gulati, Krutika S. Gaonkar, Balu Kamraj, Ambuj Kumar +1 more
2012Interdisciplinary Sciences Computational Life Sciences5 citations
Semantic Scholar
PDTM-16. PEDIATRIC HIGH GRADE GLIOMA RESOURCES FROM THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM (CBTTC) AND PEDIATRIC BRAIN TUMOR ATLAS (PBTA)
Heba Ijaz, M. Koptyra, Krutika S. Gaonkar, Jo Lynne Rokita +22 more
2019Neuro-Oncology4 citations Open access
Semantic Scholar
OMIC-14. OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS
Joshua A. Shapiro, Candace Savonen, Chante J. Bethell, Krutika S. Gaonkar +37 more
2021Neuro-Oncology1 citations Open access
Semantic Scholar
Single-cell transcriptomic profile reveals macrophage heterogeneity in medulloblastoma and their treatment-dependent recruitment
Mai T. Dang, Michael V. Gonzalez, Krutika S. Gaonkar, K. Rathi +17 more
2020bioRxiv1 citations Open access
Semantic Scholar
724 - Epigenomic Landscape, Spatial Conformation and Function of Regulatory Elements of the PDGFRA-Kit Locus in Interstitial Cells of Cajal (ICC) and Gastrointestinal Stromal Tumor (GIST) Cells
Fei Gao, Sabriya A. Syed, Jeong Heon Lee, Chuanhe Yu +14 more
20181 citations
Semantic Scholar
Analyses of Genome-Wide Histone Modifications in the Mammalian Genome
Shu-Lan Tian, S. Slager, Krutika S. Gaonkar, Huihuang Yan
20171 citations
Semantic Scholar
Hypoxia-Inducible Factor 1 Alpha (HIF1A) Stimulates Neuronal Nitric Oxide Synthase (NOS1) Transcription by Binding to Multiple Enhancers
S. Saravanaperumal, Jeong Heon Lee, Sabriya A. Syed, Y. Hayashi +9 more
20171 citations
Semantic Scholar
Computational evaluation of small molecule inhibitors of RGS4 to regulate the dopaminergic control of striatal LTD
Krutika S. Gaonkar, Gavish Gulati, K. Balu, Rituraj Purohit
20131 citations Open access
Semantic Scholar
HGG-21. ABERRANT SPLICING OF CLK1 IN PEDIATRIC HIGH-GRADE GLIOMAS DISRUPTS KEY ONCOGENIC TRANSCRIPTIONAL PROGRAMS
Ammar S. Naqvi, Brian M. Ennis, Ryan J. Corbett, Aditya Lahiri +14 more
2023Neuro-Oncology0 citations Open access
Semantic Scholar
HGG-54. CLK1 aberrant splicing in pediatric high-grade gliomas disrupts key oncogenic transcriptional programs
Ammar S. Naqvi, Brian M. Ennis, R. Jin, Krutika S. Gaonkar +9 more
2022Neuro-Oncology0 citations Open access
Semantic Scholar
OMIC-09. MAPPING THE HISTONE MUTATIONAL LANDSCAPE ACROSS ADULT AND PEDIATRIC CANCER GENOMES UNCOVERS NOVEL SOMATIC MUTATIONS IN PEDIATRIC HIGH-GRADE GLIOMAS
E. Bonner, Krutika S. Gaonkar, P. Jain, Yuan-Kun Zhu +8 more
2021Neuro-Oncology0 citations Open access
Semantic Scholar
PATH-21. TELOMERE LENGTH ANALYSIS OF CNS TUMORS IN THE PEDIATRIC BRAIN TUMOR ATLAS
J. L. Rokita, Krutika S. Gaonkar, Heba Ijaz, Daniel P. Miller +13 more
2020Neuro-Oncology0 citations Open access
Semantic Scholar
Abstract 445: Integrated proteogenomic characterization across seven histological types of pediatric brain tumors
F. Petralia, N. Tignor, B. Reva, P. Raman +44 more
2020Tumor Biology0 citations
Semantic Scholar
DIPG-31. MOLECULAR MECHANISMS AND FUNCTIONAL IMPACT OF ABERRANT SPLICING IN DIFFUSE MIDLINE GLIOMAS
Ammar S. Naqvi, Krutika S. Gaonkar, Yuan-Kun Zhu, Miguel A. Brown +5 more
2020Neuro-Oncology0 citations Open access
Semantic Scholar
TMOD-18. AN INTEGRATED SET OF PEDIATRIC HIGH GRADE GLIOMA RESOURCES FOR TRANSLATIONAL STUDIES
Heba Ijaz, V. Baubet, M. Koptyra, P. Raman +15 more
2019Neuro-Oncology0 citations Open access
Semantic Scholar
DIPG-30. ISOFORM SPECIFIC OVEREXPRESSION OF WILMS’ TUMOR PROTEIN IN DIFFUSE INTRINSIC PONTINE GLIOMAS
Sulgi Lee, M. Kambhampati, S. Yadavilli, H. Gordish-Dressman +10 more
2019Neuro-Oncology0 citations Open access
Semantic Scholar
DIPG-35. OPEN DIPG INITIATIVE: A PLATFORM FOR ACCELERATING DISCOVERY THROUGH DATA ACCESS, CONSOLIDATION AND HARMONIZATION
Krutika S. Gaonkar, P. Raman, M. Kambhampati, Chris Jones +4 more
2019Neuro-Oncology0 citations Open access
Semantic Scholar
HGG-24. COMPREHENSIVE GENOMIC ANALYSIS OF PEDIATRIC GLIOMAS UNCOVERS NOVEL MUTATIONS IN HISTONE-ENCODING GENES
E. Bonner, M. Kambhampati, Krutika S. Gaonkar, S. Mueller +3 more
2019Neuro-Oncology0 citations Open access
Semantic Scholar
202 - Hypoxia-Inducible Factor 1 Alpha (HIF1A) Stimulates Neuronal Nitric Oxide Synthase (NOS1) Transcription by Modifying Spatial Chromatin Organization
Fei Gao, Brooke D. Paradise, S. Saravanaperumal, Liang Cheng +9 more
20180 citations
Semantic Scholar
Author response: HDAC3 restrains CD8-lineage genes to maintain a bi-potential state in CD4+CD8+ thymocytes for CD4-lineage commitment
Rachael L. Philips, Jeong-Heon Lee, Krutika S. Gaonkar, Pritha Chanana +5 more
20180 citations Open access
Semantic Scholar
HGG-33. PATIENT DERIVED CELL LINES TO STUDY ATRX AND ALT IN PEDIATRIC BRAIN TUMORS
Heba Ijaz, Robert L. Dilley, Mateusz Koptra, G. Garcia +10 more
2018Neuro-Oncology0 citations Open access
Semantic Scholar
Succinate Accumulation Epigenetically Represses Kit Expression, Reduces Interstitial Cells of Cajal (ICC) and Delays Gastric Emptying of Solids
S. Saravanaperumal, Y. Hayashi, G. Gajdos, Sabriya A. Syed +18 more
20170 citations
Semantic Scholar
HDAC3 is required to suppress the CD8-lineage program in DP thymocytes for CD4-lineage T cell commitment
Rachael L. Philips, Jeong-Heon Lee, Krutika S. Gaonkar, Ji-Young Chung +3 more
2017Journal of Immunology0 citations
Semantic Scholar

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M. Santi — researcher profile on SciRah

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T. Ordog — researcher profile on SciRah

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K. Rathi — researcher profile on SciRah

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M. Koptyra — researcher profile on SciRah

Miguel A. Brown×9

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Miguel A. Brown — researcher profile on SciRah