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P. Gagnaire · SciRah

Researcher profile · Semantic Scholar

P. Gagnaire

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P. Gagnaire — researcher profile on SciRah

h-index: 33
Works: 100
Citations: 3,923

Most-cited papers

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
M. Tine, H. Kuhl, P. Gagnaire, B. Louro +17 more
2014Nature Communications453 citations Open access
Semantic Scholar
Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era
P. Gagnaire, T. Broquet, D. Aurelle, F. Viard +4 more
2015Evolutionary Applications255 citations Open access
Semantic Scholar
THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION‐WITH‐GENE‐FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING
P. Gagnaire, S. Pavey, Éric Normandeau, L. Bernatchez
2013Evolution; international journal of organic evolution210 citations Open access
Semantic Scholar
The European sea bass: a key marine fish model in the wild and in aquaculture
M. Vandeputte, P. Gagnaire, F. Allal
2019Animal Genetics160 citations Open access
Semantic Scholar
The geography of introgression in a patchy environment and the thorn in the side of ecological speciation
N. Bierne, P. Gagnaire, P. David
2013146 citations Open access
Semantic Scholar
Parallel genetic divergence among coastal–marine ecotype pairs of European anchovy explained by differential introgression after secondary contact
A. Le Moan, P. Gagnaire, F. Bonhomme
2016Molecular Ecology142 citations
Semantic Scholar
The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel (Anguilla rostrata)
P. Gagnaire, Éric Normandeau, C. Côté, Michael Møller Hansen +1 more
2012Genetics137 citations Open access
Semantic Scholar
Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)
C. Rougeux, L. Bernatchez, P. Gagnaire
2016bioRxiv131 citations Open access
Semantic Scholar
Population genetics of the American eel (Anguilla rostrata): FST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species
C. Côté, P. Gagnaire, V. Bourret, G. Verreault +2 more
2013Molecular Ecology121 citations
Semantic Scholar
The origin and remolding of genomic islands of differentiation in the European sea bass
M. Duranton, F. Allal, C. Fraïsse, N. Bierne +2 more
2017Nature Communications116 citations Open access
Semantic Scholar
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
Q. Rougemont, P. Gagnaire, C. Perrier, C. Genthon +3 more
2017Molecular Ecology108 citations
Semantic Scholar
Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)
P. Gagnaire, Éric Normandeau, S. Pavey, L. Bernatchez
2013Molecular Ecology106 citations
Semantic Scholar
Using Haplotype Information for Conservation Genomics.
M. Leitwein, M. Duranton, Q. Rougemont, P. Gagnaire +1 more
2019Trends in Ecology & Evolution105 citations Open access
Semantic Scholar
Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches
P. Gagnaire, O. Gaggiotti
2016Current Zoology88 citations Open access
Semantic Scholar
Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels.
P. Gagnaire, Éric Normandeau, L. Bernatchez
2012Molecular biology and evolution84 citations Open access
Semantic Scholar
RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs
M. Laporte, S. Rogers, Anne-Marie Dion-Côté, Éric Normandeau +4 more
2015G3: Genes, Genomes, Genetics79 citations Open access
Semantic Scholar
Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels
P. Gagnaire, V. Albert, B. Jónsson, Louis Bernatchez
2009Molecular Ecology64 citations
Semantic Scholar
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata
P. Gagnaire, Jean-Baptiste Lamy, F. Cornette, S. Heurtebise +5 more
2018bioRxiv58 citations Open access
Semantic Scholar
Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip
R. Griot, F. Allal, F. Phocas, S. Brard-Fudulea +13 more
2021Aquaculture56 citations Open access
Semantic Scholar
WITHIN‐POPULATION STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA
P. Gagnaire, Yuki Minegishi, S. Zenboudji, P. Valade +2 more
2011Evolution; international journal of organic evolution55 citations Open access
Semantic Scholar
Population genomic footprints of fine‐scale differentiation between habitats in Mediterranean blue tits
M. Szulkin, P. Gagnaire, N. Bierne, A. Charmantier
2016Molecular Ecology53 citations Open access
Semantic Scholar
A Dense Brown Trout (Salmo trutta) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity
M. Leitwein, B. Guinand, Juliette Pouzadoux, E. Desmarais +2 more
2016G3: Genes, Genomes, Genetics51 citations Open access
Semantic Scholar
Comparative genomics approach to evolutionary process connectivity
P. Gagnaire
2020Evolutionary Applications49 citations Open access
Semantic Scholar
New clues for freshwater eels (Anguilla spp.) migration routes to eastern Madagascar and surrounding islands
T. Robinet, E. Réveillac, M. Kuroki, J. Aoyama +6 more
200848 citations
Semantic Scholar
RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata)
C. Babin, P. Gagnaire, S. Pavey, L. Bernatchez
2017Genome Biology and Evolution45 citations Open access
Semantic Scholar
Genomic consequences of a recent three‐way admixture in supplemented wild brown trout populations revealed by local ancestry tracts
M. Leitwein, P. Gagnaire, E. Desmarais, P. Berrebi +1 more
2018Molecular Ecology44 citations Open access
Semantic Scholar
Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next‐generation sequencing
S. Pavey, M. Sevellec, W. Adam, Éric Normandeau +6 more
2013Molecular Ecology42 citations
Semantic Scholar
Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations.
M. Leitwein, P. Gagnaire, E. Desmarais, S. Guendouz +3 more
2016Journal of Fish Biology38 citations
Semantic Scholar
Present and past genetic connectivity of the Indo‐Pacific tropical eel Anguilla bicolor
Yuki Minegishi, P. Gagnaire, J. Aoyama, P. Bosc +3 more
201238 citations
Semantic Scholar
Assessment of cryptic species diversity within blooms and cyst bank of the Alexandrium tamarense complex (Dinophyceae) in a Mediterranean lagoon facilitated by semi-multiplex PCR
B. Genovesi, Mi-Sun Shin-Grzebyk, D. Grzebyk, M. Laabir +7 more
201138 citations Open access
Semantic Scholar
Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex
C. Rougeux, P. Gagnaire, K. Praebel, O. Seehausen +1 more
2018bioRxiv36 citations Open access
Semantic Scholar
Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages
Florentine Riquet, C. Liautard-Haag, L. Woodall, C. Bouza +12 more
2017bioRxiv36 citations Open access
Semantic Scholar
Divergence and gene flow history at two large chromosomal inversions underlying ecotype differentiation in the long‐snouted seahorse
Laura Meyer, Pierre Barry, Florentine Riquet, A. Foote +9 more
2024Molecular Ecology33 citations Open access
Semantic Scholar
Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics
Keoni Saint-Pé, M. Leitwein, L. Tissot, N. Frutto Poulet +6 more
2019BMC Genomics33 citations Open access
Semantic Scholar
Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.)
A. Souissi, F. Bonhomme, Manuel Manchado, L. Bahri-Sfar +1 more
2018Heredity33 citations Open access
Semantic Scholar
Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata
L. Chaoui, P. Gagnaire, B. Guinand, J. Quignard +3 more
2012Molecular Ecology31 citations
Semantic Scholar
Anguilla marmorata larval migration plasticity as revealed by otolith microstructural analysis
E. Réveillac, E. Feunteun, P. Berrebi, P. Gagnaire +3 more
200830 citations
Semantic Scholar
Model‐based demographic inference of introgression history in European whitefish species pairs'
C. Rougeux, P. Gagnaire, L. Bernatchez
2019Journal of Evolutionary Biology29 citations
Semantic Scholar
The contribution of ancient admixture to reproductive isolation between European sea bass lineages
M. Duranton, F. Allal, S. Valière, O. Bouchez +2 more
2019bioRxiv29 citations Open access
Semantic Scholar
Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.
Sara Faggion, M. Vandeputte, B. Chatain, P. Gagnaire +1 more
2018Heredity29 citations Open access
Semantic Scholar
Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
P. Barry, T. Broquet, P. Gagnaire
2020bioRxiv27 citations Open access
Semantic Scholar
Ocean currents drive secondary contact between Anguilla marmorata populations in the Indian Ocean
P. Gagnaire, Yuki Minegishi, J. Aoyama, E. Réveillac +5 more
200927 citations Open access
Semantic Scholar
Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish
Israel Guerrero-Cózar, J. Gómez-Garrido, C. Berbel, J. Martínez-Blanch +4 more
2021Scientific Reports25 citations Open access
Semantic Scholar
Do North Atlantic eels show parallel patterns of spatially varying selection?
Malene G Ulrik, J. Pujolar, A. Ferchaud, M. Jacobsen +7 more
2014BMC Evolutionary Biology24 citations Open access
Semantic Scholar
Unidirectional trans‐Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna
N. Díaz-Arce, P. Gagnaire, David E. Richardson, J. Walter +17 more
2023Molecular Ecology23 citations Open access
Semantic Scholar
The spatial scale of dispersal revealed by admixture tracts
M. Duranton, F. Bonhomme, P. Gagnaire
2019Evolutionary Applications23 citations Open access
Semantic Scholar
The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies
C. Fraïsse, C. Roux, P. Gagnaire, J. Romiguier +3 more
2018bioRxiv23 citations Open access
Semantic Scholar
Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data
N. Nikolic, Shenglin Liu, M. Jacobsen, B. Jónsson +3 more
2019Molecular Ecology22 citations
Semantic Scholar
The role of recombination on genome-wide patterns of local ancestry exemplified by supplemented Brook Charr populations
M. Leitwein, H. Cayuela, A. Ferchaud, Éric Normandeau +2 more
2019bioRxiv19 citations Open access
Semantic Scholar
Development of a key using morphological characters to distinguish south-western Indian Ocean anguillid glass eels.
E. Réveillac, P. Gagnaire, Raymonde Lecomte-Finiger, P. Berrebi +3 more
2009Journal of Fish Biology19 citations
Semantic Scholar

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