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Y. Ishino · SciRah

Researcher profile · Semantic Scholar

Y. Ishino

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Y. Ishino — researcher profile on SciRah

h-index: 46
Works: 271
Citations: 8,795

Most-cited papers

History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology
Y. Ishino, M. Krupovic, P. Forterre
2018Journal of Bacteriology382 citations Open access
Semantic Scholar
The replication machinery of LUCA: common origin of DNA replication and transcription
E. Koonin, M. Krupovic, S. Ishino, Y. Ishino
2020BMC Biology82 citations Open access
Semantic Scholar
Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea
S. Ishino, Y. Nishi, Soichiro Oda, T. Uemori +5 more
2016Nucleic Acids Research60 citations Open access
Semantic Scholar
Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease.
S. Nakae, A. Hijikata, T. Tsuji, Kouki Yonezawa +5 more
2016Structure50 citations Open access
Semantic Scholar
Mutant Taq DNA polymerases with improved elongation ability as a useful reagent for genetic engineering
T. Yamagami, S. Ishino, Y. Kawarabayasi, Y. Ishino
2014Frontiers in Microbiology46 citations Open access
Semantic Scholar
DNA repair in hyperthermophilic and hyperradioresistant microorganisms.
Y. Ishino, I. Narumi
2015Current Opinion in Microbiology44 citations
Semantic Scholar
Multiple Interactions of the Intrinsically Disordered Region between the Helicase and Nuclease Domains of the Archaeal Hef Protein*
S. Ishino, T. Yamagami, M. Kitamura, N. Kodera +7 more
2014Journal of Biological Chemistry44 citations Open access
Semantic Scholar
Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island
G. Antranikian, Marcel Suleiman, Christian Schäfers, M. Adams +23 more
2017Extremophiles43 citations
Semantic Scholar
Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication
S. Ishino, S. Skouloubris, Hanae Kudo, C. l’Hermitte-Stead +4 more
2018Nucleic Acids Research42 citations Open access
Semantic Scholar
A novel endonuclease that may be responsible for damaged DNA base repair in Pyrococcus furiosus
Miyako Shiraishi, S. Ishino, T. Yamagami, Yuriko Egashira +2 more
2015Nucleic Acids Research41 citations Open access
Semantic Scholar
The Cdc45/RecJ-like protein forms a complex with GINS and MCM, and is important for DNA replication in Thermococcus kodakarensis
Mariko Nagata, S. Ishino, T. Yamagami, Hiromi Ogino +4 more
2017Nucleic Acids Research29 citations Open access
Semantic Scholar
Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication
T. Oyama, S. Ishino, T. Shirai, T. Yamagami +4 more
2016Nucleic Acids Research29 citations Open access
Semantic Scholar
DJ-1 family Maillard deglycases prevent acrylamide formation.
G. Richarme, E. Marguet, P. Forterre, S. Ishino +1 more
2016Biochemical and Biophysical Research Communications - BBRC25 citations
Semantic Scholar
A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea
Ying Liu, S. Ishino, Y. Ishino, G. Péhau-Arnaudet +2 more
2017Journal of Virology24 citations Open access
Semantic Scholar
Ephedrae Herba and Cinnamomi Cortex interactions with G glycoprotein inhibit respiratory syncytial virus infectivity
Aya Fujikane, A. Sakamoto, R. Fujikane, A. Nishi +3 more
2022Communications Biology22 citations Open access
Semantic Scholar
Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding
S. Nagai, S. Sildever, N. Nishi, Satoshi Tazawa +3 more
2022Metabarcoding and Metagenomics20 citations Open access
Semantic Scholar
Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations
K. Maruyama, H. Imai, Momoko Kawamura, S. Ishino +3 more
2019Scientific Reports20 citations Open access
Semantic Scholar
Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm
Liu-Ying Wen, Masako Fukuda, M. Sunada, S. Ishino +5 more
2015Journal of Experimental Botany20 citations Open access
Semantic Scholar
EndoQ and EndoV work individually for damaged DNA base repair in Pyrococcus furiosus.
S. Ishino, Naruto Makita, Miyako Shiraishi, T. Yamagami +1 more
2015Biochimie18 citations
Semantic Scholar
An optimized Npro-based method for the expression and purification of intrinsically disordered proteins for an NMR study
Natsuko Goda, Naoki Matsuo, T. Tenno, S. Ishino +4 more
2015Intrinsically Disordered Proteins17 citations Open access
Semantic Scholar
New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures
Ying Liu, David Brandt, S. Ishino, Y. Ishino +4 more
2019Environmental Microbiology16 citations Open access
Semantic Scholar
Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2
Hiromi Ogino, S. Ishino, G. Haugland, N. Birkeland +2 more
2014Extremophiles16 citations
Semantic Scholar
Pol B, a Family B DNA Polymerase, in Thermococcus kodakarensis is Important for DNA Repair, but not DNA Replication
Takashi Kushida, I. Narumi, S. Ishino, Y. Ishino +3 more
2019Microbes and Environments15 citations Open access
Semantic Scholar
The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3′-5′ exonuclease that associates with a DNA replication complex
Hiromi Ogino, S. Ishino, D. Kohda, Y. Ishino
2017Journal of Biological Chemistry15 citations Open access
Semantic Scholar
Functional role of the C‐terminal tail of the archaeal ribosomal stalk in recruitment of two elongation factors to the sarcin/ricin loop of 23S rRNA
H. Imai, T. Miyoshi, R. Murakami, K. Ito +2 more
2015Genes to Cells15 citations Open access
Semantic Scholar
Role of RadA and DNA Polymerases in Recombination-Associated DNA Synthesis in Hyperthermophilic Archaea
G. Hogrel, Yang Lu, Nicolas Alexandre, Audrey Bossé +4 more
2020Biomolecules14 citations Open access
Semantic Scholar
PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales
Miyako Shiraishi, S. Ishino, Kotaro Yoshida, T. Yamagami +2 more
2016Scientific Reports14 citations Open access
Semantic Scholar
Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan
K. Yoshitake, G. Kimura, T. Sakami, Tsuyoshi Watanabe +19 more
2021Scientific Reports13 citations Open access
Semantic Scholar
A functional endonuclease Q exists in the bacterial domain: identification and characterization of endonuclease Q from Bacillus pumilus
Miyako Shiraishi, S. Ishino, I. Cann, Y. Ishino
2017Bioscience, biotechnology and biochemistry13 citations Open access
Semantic Scholar
Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy
K. Mayanagi, K. Oki, N. Miyazaki, S. Ishino +6 more
2020BMC Biology11 citations Open access
Semantic Scholar
From Structure-Function Analyses to Protein Engineering for Practical Applications of DNA Ligase
Maiko Tanabe, Y. Ishino, Hirokazu Nishida
2015Archaea11 citations Open access
Semantic Scholar
Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase
Natsuki Takashima, S. Ishino, K. Oki, Mika Takafuji +4 more
2018Extremophiles10 citations
Semantic Scholar
Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus
K. Miyazono, S. Ishino, Naruto Makita, T. Ito +2 more
2018Nucleic Acids Research10 citations Open access
Semantic Scholar
Possible function of the second RecJ-like protein in stalled replication fork repair by interacting with Hef
Mariko Nagata, S. Ishino, T. Yamagami, J. Simons +3 more
2017Scientific Reports10 citations Open access
Semantic Scholar
A Well-Conserved Archaeal B-Family Polymerase Functions as an Extender in Translesion Synthesis
Xu Feng, Bao-Chang Zhang, Zheng-Fa Gao, Ruyi Xu +6 more
2022mBio9 citations Open access
Semantic Scholar
DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen
K. Oki, T. Yamagami, Mariko Nagata, K. Mayanagi +5 more
2021Nucleic Acids Research9 citations Open access
Semantic Scholar
Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome
K. Oki, Mariko Nagata, T. Yamagami, T. Numata +3 more
2021Nucleic Acids Research9 citations Open access
Semantic Scholar
The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG
Miyako Shiraishi, S. Ishino, M. Heffernan, I. Cann +1 more
2018Scientific Reports9 citations Open access
Semantic Scholar
Direct visualization of DNA baton pass between replication factors bound to PCNA
K. Mayanagi, S. Ishino, T. Shirai, T. Oyama +4 more
2018Scientific Reports9 citations Open access
Semantic Scholar
A longer finger-subdomain of family A DNA polymerases found by metagenomic analysis strengthens DNA binding and primer extension abilities.
T. Yamagami, Hiroaki Matsukawa, Sae Tsunekawa, Y. Kawarabayasi +2 more
2016Gene7 citations Open access
Semantic Scholar
Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
K. Miyazono, S. Ishino, K. Tsutsumi, T. Ito +2 more
2015Nucleic Acids Research7 citations Open access
Semantic Scholar
Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure
Kodai Yamaura, Naomichi Takemata, Masashi Kariya, Ayami Osaka +7 more
2025Nature Communications6 citations Open access
Semantic Scholar
New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae.
S. Medvedeva, David Brandt, V. Cvirkaite-Krupovic, Ying Liu +6 more
2021Environmental Microbiology6 citations Open access
Semantic Scholar
Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters
Kaoru Matsumoto, T. Sakami, Tsuyoshi Watanabe, Y. Taniuchi +12 more
2021PLoS ONE6 citations Open access
Semantic Scholar
Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis
Mariko Nagata, S. Ishino, T. Yamagami, Y. Ishino
2019Bioscience, biotechnology and biochemistry5 citations
Semantic Scholar
Mutation of the gene encoding the ribonuclease P RNA in the hyperthermophilic archaeon Thermococcus kodakarensis causes decreased growth rate and impaired processing of tRNA precursors.
Toshifumi Ueda, S. Ishino, Kotaro Suematsu, T. Nakashima +4 more
2015Biochemical and Biophysical Research Communications - BBRC5 citations
Semantic Scholar
Enzymatic Switching Between Archaeal DNA Polymerases Facilitates Abasic Site Bypass
Xu Feng, Bao-Chang Zhang, Ruyi Xu, Zhe Gao +7 more
2021Frontiers in Microbiology4 citations Open access
Semantic Scholar
Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island
G. Antranikian, Marcel Suleiman, Christian Schäfers, M. Adams +23 more
2017Extremophiles4 citations
Semantic Scholar
Archaeal DNA Polymerase-B as a DNA Template Guardian: Links between Polymerases and Base/Alternative Excision Repair Enzymes in Handling the Deaminated Bases Uracil and Hypoxanthine
J. Abellón-Ruiz, S. Ishino, Y. Ishino, B. Connolly
2016Archaea4 citations Open access
Semantic Scholar
Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum
Hiromi Ogino, S. Ishino, T. Oyama, D. Kohda +1 more
2015Bioscience, biotechnology and biochemistry4 citations
Semantic Scholar

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