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D. Harhay · SciRah

Researcher profile · Semantic Scholar

D. Harhay

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D. Harhay — researcher profile on SciRah

h-index: 16
Works: 50
Citations: 1,629

Most-cited papers

Reducing assembly complexity of microbial genomes with single-molecule sequencing
S. Koren, G. Harhay, T. Smith, J. Bono +5 more
2013Genome Biology387 citations Open access
Semantic Scholar
WGS accurately predicts antimicrobial resistance in Escherichia coli.
G. Tyson, P. McDermott, Cong Li, Yuan-Sha Chen +10 more
2015Journal of Antimicrobial Chemotherapy238 citations Open access
Semantic Scholar
Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle
L. Durso, G. Harhay, T. Smith, J. Bono +6 more
2010Applied and Environmental Microbiology186 citations Open access
Semantic Scholar
Antimicrobial-Resistant Bacterial Populations and Antimicrobial Resistance Genes Obtained from Environments Impacted by Livestock and Municipal Waste
G. Agga, T. Arthur, L. Durso, D. Harhay +1 more
2015PLoS ONE127 citations Open access
Semantic Scholar
Biofilm formation by Shiga toxin-producing Escherichia coli O157:H7 and Non-O157 strains and their tolerance to sanitizers commonly used in the food processing environment.
Rong Wang, J. Bono, N. Kalchayanand, S. Shackelford +1 more
2012Journal of Food Protection120 citations Open access
Semantic Scholar
Mixed biofilm formation by Shiga toxin-producing Escherichia coli and Salmonella enterica serovar Typhimurium enhanced bacterial resistance to sanitization due to extracellular polymeric substances.
Rong Wang, N. Kalchayanand, J. Schmidt, D. Harhay
2013Journal of Food Protection97 citations Open access
Semantic Scholar
Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States
D. Tadesse, Cong Li, S. Mukherjee, Chih-Hao Hsu +8 more
2018Microbial Drug Resistance54 citations Open access
Semantic Scholar
Biofilm Formation, Antimicrobial Resistance, and Sanitizer Tolerance of Salmonella enterica Strains Isolated from Beef Trim
Rong Wang, J. Schmidt, D. Harhay, J. Bosilevac +2 more
2017Foodborne pathogens and disease43 citations
Semantic Scholar
Pharmacokinetics and pharmacodynamics of gamithromycin in pulmonary epithelial lining fluid in naturally occurring bovine respiratory disease in multisource commingled feedlot cattle.
Keith D. DeDonder, Michael D. Apley, Meng-Jie Li, Ronette Gehring +7 more
2016Journal of Veterinary Pharmacology and Therapeutics36 citations Open access
Semantic Scholar
Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.
S. Capik, B. White, B. Lubbers, M. Apley +8 more
2017American Journal of Veterinary Research34 citations
Semantic Scholar
Transferability of antimicrobial resistance from multidrug-resistant Escherichia coli isolated from cattle in the USA to E. coli and Salmonella Newport recipients.
Toni L. Poole, Todd R. Callaway, K. Norman, H. M. Scott +6 more
2017Journal of Global Antimicrobial Resistance32 citations Open access
Semantic Scholar
Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms
Scott V. Nguyen, G. Harhay, J. Bono, T. Smith +1 more
2017mSystems31 citations Open access
Semantic Scholar
Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association
Scott V. Nguyen, D. Harhay, J. Bono, T. Smith +6 more
2018Microbial Genomics25 citations Open access
Semantic Scholar
Identifying a list of Salmonella serotypes of concern to target for reducing risk of salmonellosis
T. Katz, D. Harhay, John W. Schmidt, T. L. Wheeler
2024Frontiers in Microbiology24 citations Open access
Semantic Scholar
Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle
G. Harhay, S. Koren, A. Phillippy, D. McVey +6 more
2013Genome Announcements24 citations Open access
Semantic Scholar
Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing
P. Myer, T. Mcdaneld, L. Kuehn, K. Dedonder +9 more
2020PLoS ONE23 citations Open access
Semantic Scholar
Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases.
K. Dedonder, D. Harhay, M. Apley, B. Lubbers +9 more
2016Veterinary Microbiology15 citations Open access
Semantic Scholar
Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle
M. Bugarel, Peter W. Cook, H. den Bakker, D. Harhay +2 more
2019Microbiology Resource Announcements13 citations Open access
Semantic Scholar
Growth assessment of Salmonella enterica multi-serovar populations in poultry rinsates with commonly used enrichment and plating media.
Lisa Gorski, N. Shariat, Amber K. Richards, A. T. Siceloff +2 more
2024Food microbiology11 citations Open access
Semantic Scholar
Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever
G. Harhay, D. McVey, S. Koren, A. Phillippy +7 more
2014Genome Announcements11 citations Open access
Semantic Scholar
Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever
G. Harhay, R. Murray, B. Lubbers, D. Griffin +8 more
2014Genome Announcements10 citations Open access
Semantic Scholar
Rapid estimation of Salmonella enterica contamination level in ground beef - Application of the time-to-positivity method using a combination of molecular detection and direct plating.
D. Harhay, M. Weinroth, J. Bono, G. Harhay +1 more
2021Food microbiology9 citations Open access
Semantic Scholar
Effectiveness and Functional Mechanism of a Multicomponent Sanitizer against Biofilms Formed by Escherichia coli O157:H7 and Five Salmonella Serotypes Prevalent in the Meat Industry.
Rong Wang, You Zhou, N. Kalchayanand, D. Harhay +1 more
2020Journal of Food Protection9 citations Open access
Semantic Scholar
Reducing assembly complexity of microbial genomes with single-molecule sequencing
S. Koren, G. Harhay, T. Smith, J. Bono +5 more
2013Genome Biology9 citations Open access
Semantic Scholar
Evaluation of methods for identifying poultry wing rinses with Salmonella concentrations greater than or equal to 10 CFU/mL.
John W. Schmidt, Anna V. Carlson, J. Bosilevac, D. Harhay +4 more
2024Journal of Food Protection8 citations Open access
Semantic Scholar
A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats
G. Harhay, D. Harhay, J. Bono, S. Capik +6 more
2019Scientific Reports7 citations Open access
Semantic Scholar
Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans
D. Harhay, J. Bono, T. Smith, P. Fields +5 more
2016Genome Announcements7 citations Open access
Semantic Scholar
Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources
Scott V. Nguyen, D. Harhay, J. Bono, T. Smith +7 more
2016Genome Announcements6 citations Open access
Semantic Scholar
A novel approach for detecting Salmonella enterica strains frequently attributed to human illness—development and validation of the highly pathogenic Salmonella (HPS) multiplex PCR assay
D. Harhay, Kerry D. Brader, T. Katz, G. Harhay +3 more
2025Frontiers in Microbiology5 citations
Semantic Scholar
Closed Genome Sequences of Seven Histophilus somni Isolates from Beef Calves with Bovine Respiratory Disease Complex
G. Harhay, D. Harhay, J. Bono, T. Smith +6 more
2017Genome Announcements5 citations Open access
Semantic Scholar
Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources
Scott V. Nguyen, D. Harhay, J. Bono, T. Smith +7 more
2016Genome Announcements5 citations Open access
Semantic Scholar
Closed Genome Sequences and Antibiograms of 16 Pasteurella multocida Isolates from Bovine Respiratory Disease Complex Cases and Apparently Healthy Controls
G. Harhay, D. Harhay, J. Bono, T. Smith +6 more
2018Microbiology Resource Announcements4 citations Open access
Semantic Scholar
A Conserved Histophilus somni 23S Intervening Sequence Yields Functional, Fragmented 23S rRNA
G. Harhay, D. Harhay, Kerry D. Brader, Timothy P. L. Smith
2021Microbiology spectrum3 citations Open access
Semantic Scholar
Twenty-four month longitudinal study suggests little to no horizontal gene transfer in situ between third-generation cephalosporin-resistant Salmonella and third-generation cephalosporin-resistant Escherichia coli in a beef cattle feedyard.
J. Schmidt, S. Murray, A. Dickey, T. Wheeler +2 more
2021Journal of Food Protection3 citations Open access
Semantic Scholar
Effect of Direct-Fed Microbial Dosage on the Fecal Concentrations of Enterohemorrhagic Escherichia coli in Feedlot Cattle
Brandon E. Luedtke, J. Bosilevac, D. Harhay, T. Arthur
2016Foodborne pathogens and disease3 citations Open access
Semantic Scholar
A Computational Protocol for Enhanced Characterization of Sequence Differences Among Salmonella enterica isolates within SNP Clusters Identified in the NCBI Pathogen Detection System.
H. Wijesena, D. Harhay, T. Katz, T. L. Wheeler +3 more
2026Journal of Food Protection2 citations Open access
Semantic Scholar
From cantaloupe to cattle: Pseudomonas alabamensis sp. nov. described from diseased cantaloupe (Cucumis melo) foliage and a bovine (Bos taurus) nasopharynx
Kiersten R. Fullem, M. P. Maclellan, Fanny B. Iriarte, Mousami Poudel +10 more
2025International Journal of Systematic and Evolutionary Microbiology2 citations Open access
Semantic Scholar
Research note: Application of electron beam technology to reduce foodborne pathogens in ground chicken and turkey meats
Tanmaie Kalapala, Komala Arsi, A. L. F. V. Assumpcao, G. Kumar-Phillips +8 more
2025Poultry Science2 citations Open access
Semantic Scholar
Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest
D. Harhay, T. Smith, G. Harhay, G. Loneragan +5 more
2018Microbiology Resource Announcements2 citations Open access
Semantic Scholar
Phase variation in Mannheimia haemolytica challenges the static genome paradigm
G. Harhay, Kelsey McClure, Kerry D. Brader, Kristen L. Kuhn +2 more
2025Microbiology spectrum1 citations Open access
Semantic Scholar
Publisher Correction: A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats
G. Harhay, D. Harhay, J. Bono, S. Capik +6 more
2020Scientific Reports1 citations Open access
Semantic Scholar
Identification of Chicken Component Samples Containing Salmonella Concentrations Greater Than or Equal to 1 CFU/g †
John W. Schmidt, Weifan Wu, D. Harhay, T. L. Wheeler
1 citations
Semantic Scholar
Salmonella spp. in deep tissue lymph nodes of bovine origin: A systematic review and meta-analysis.
Ilhami Okur, D. Harhay, John W. Schmidt, T. Arthur +3 more
2026Journal of food microbiology0 citations
Semantic Scholar
Geographic Distributions of Top Beef Salmonella Serovars in the U.S.
T. Katz, T. D. Mortimer, A. T. Siceloff, N. Shariat +3 more
2026medRxiv0 citations Open access
Semantic Scholar
A Workflow to Enhance Bacterial Pathway Genome Databases with Predicted Functional and Regulatory Annotation v1
G. Harhay, Jim Bono, D. Harhay
2020protocols.io0 citations Open access
Semantic Scholar
Peer Review #1 of "Antimicrobial resistant gene prevalence in soils due to animal manure deposition and long-term pasture management (v0.3)"
Yi-Chao Yang, A. Ashworth, J. DeBruyn, L. Durso +241 more
20200 citations Open access
Semantic Scholar
Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node
B. Haley, T. Smith, G. Harhay, G. Loneragan +5 more
2019Microbiology Resource Announcements0 citations Open access
Semantic Scholar
Consecutive Treatments with Sterilex Eliminate Biofilms by
Rong Wang, Zhou You, N. Kalchayanand, D. Harhay +1 more
20190 citations
Semantic Scholar
Genotype – phenotype correlation in E . coli 2765 JAC
G. Tyson, P. McDermott, Cong Li, Yuan-Sha Chen +10 more
20150 citations
Semantic Scholar
The Fight Against Salmonella in Agriculture – Research Perspective (a view from the trenches) (PowerPoint)
D. Harhay
2012AgEcon search0 citations Open access
Semantic Scholar

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