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Bing-Jie Li · SciRah

Researcher profile · Semantic Scholar

Bing-Jie Li

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Bing-Jie Li — researcher profile on SciRah

h-index: 20
Works: 78
Citations: 1,606

Most-cited papers

A multi-tissue atlas of regulatory variants in cattle
Shuli Liu, Yahui Gao, O. Canela-Xandri, Sheng Wang +24 more
2022Nature Genetics234 citations Open access
Semantic Scholar
A compendium of genetic regulatory effects across pig tissues
J. Teng, Yahui Gao, Hong-Wei Yin, Zhonghao Bai +98 more
2022bioRxiv229 citations Open access
Semantic Scholar
Review: Selecting for improved feed efficiency and reduced methane emissions in dairy cattle.
P. Løvendahl, G. Difford, Bing-Jie Li, M. Chagunda +4 more
2018Animal149 citations Open access
Semantic Scholar
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
L. Fang, Wentao Cai, Shuli Liu, O. Canela-Xandri +17 more
2020Genome Research130 citations Open access
Semantic Scholar
Genetic regulation of gene expression across multiple tissues in chickens
D. Guan, Zhonghao Bai, Xiao-Ning Zhu, Conghao Zhong +58 more
2025Nature Genetics76 citations Open access
Semantic Scholar
Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
L. Fang, Shuli Liu, Mei Liu, Xiaolong Kang +8 more
2019BMC Biology68 citations Open access
Semantic Scholar
Genome-Wide Transcriptional and Post-transcriptional Regulation of Innate Immune and Defense Responses of Bovine Mammary Gland to Staphylococcus aureus
L. Fang, Ya-Li Hou, J. An, Bing-Jie Li +9 more
2016Frontiers in Cellular and Infection Microbiology65 citations Open access
Semantic Scholar
The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project
L. Fang, J. Teng, Qing Lin, Zhonghao Bai +130 more
2025Nature Genetics62 citations Open access
Semantic Scholar
Genetic and epigenetic architecture of paternal origin contribute to gestation length in cattle
L. Fang, Ji-Cai Jiang, Bing-Jie Li, Yang Zhou +5 more
2019Communications Biology54 citations Open access
Semantic Scholar
Genomic prediction of residual feed intake in US Holstein dairy cattle.
Bing-Jie Li, P. VanRaden, E. Guduk, J. O'Connell +6 more
2020Journal of Dairy Science49 citations Open access
Semantic Scholar
Mapping and functional characterization of structural variation in 1060 pig genomes
Liu Yang, Hong-Wei Yin, Li-Jing Bai, Wen-Ye Yao +19 more
2024Genome Biology37 citations Open access
Semantic Scholar
Integration of a single-step genome-wide association study with a multi-tissue transcriptome analysis provides novel insights into the genetic basis of wool and weight traits in sheep
Bing-Ru Zhao, Han-Peng Luo, Xi-Xia Huang, Chen Wei +8 more
2021Genetics Selection Evolution35 citations Open access
Semantic Scholar
Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits
L. Fang, Yang Zhou, Shuli Liu, Ji-Cai Jiang +9 more
2019Epigenetics35 citations Open access
Semantic Scholar
A multi-tissue single-cell expression atlas in cattle
Bo Han, Hou-Cheng Li, Wei-Jie Zheng, Qi Zhang +34 more
2025Nature Genetics34 citations Open access
Semantic Scholar
Comparative transcriptome in large-scale human and cattle populations
Yuelin Yao, Shuli Liu, Charley Xia, Yahui Gao +22 more
2022Genome Biology34 citations Open access
Semantic Scholar
UKCropDiversity‐HPC: A collaborative high‐performance computing resource approach for sustainable agriculture and biodiversity conservation
L. Percival-Alwyn, Ian Barnes, Matthew D. Clark, James Cockram +10 more
2024Plants, People, Planet33 citations Open access
Semantic Scholar
MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle
L. Fang, P. Sørensen, G. Sahana, F. Panitz +8 more
2018Scientific Reports28 citations Open access
Semantic Scholar
Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs
Zhiting Xu, Qing Lin, Xiaodian Cai, Zhanming Zhong +68 more
2025National Science Review27 citations Open access
Semantic Scholar
Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle
L. Fang, Yang Zhou, Shuli Liu, Ji-Cai Jiang +9 more
2019Epigenomes25 citations Open access
Semantic Scholar
A comprehensive catalogue of regulatory variants in the cattle transcriptome
Shuli Liu, Yahui Gao, O. Canela-Xandri, Sheng Wang +20 more
2020bioRxiv24 citations Open access
Semantic Scholar
Single-cell analysis via manifold fitting: A framework for RNA clustering and beyond
Zhi-Gang Yao, Bing-Jie Li, Yu-Kun Lu, Shing-Tung Yau
2024Proceedings of the National Academy of Sciences of the United States of America21 citations Open access
Semantic Scholar
FarmGTEx TWAS-server: An Interactive Web Server for Customized TWAS Analysis
Zhen-Yang Zhang, Zi-Tao Chen, J. Teng, Shuli Liu +10 more
2025Genomics, Proteomics & Bioinformatics16 citations Open access
Semantic Scholar
The ChickenGTEx pilot analysis: a reference of regulatory variants across 28 chicken tissues
D. Guan, Zhonghao Bai, Xiao-Ning Zhu, Conghao Zhong +55 more
2023bioRxiv16 citations Open access
Semantic Scholar
Manifold Fitting
Zhi-Gang Yao, Jiaji Su, Bing-Jie Li, Shing-Tung Yau
202314 citations
Semantic Scholar
Sex-specific markers developed by 2b-RAD and genome sequencing reveal an XX/XY sex-determination system in mud carp (Cirrhinus molitorella)
Haiyang Liu, Wei-Wei Xia, Bing-Jie Li, Lan Liu +6 more
2023Aquaculture13 citations
Semantic Scholar
Single-step genome-wide association analyses of claw horn lesions in Holstein cattle using linear and threshold models
Bing-Jie Li, M. Barden, V. Kapsona, E. Sánchez-Molano +8 more
2023Genetics Selection Evolution13 citations Open access
Semantic Scholar
Major quantitative trait loci influencing milk production and conformation traits in Guernsey dairy cattle detected on BTA19.
Bing-Jie Li, P. VanRaden, D. Null, J. O'Connell +1 more
2020Journal of Dairy Science11 citations Open access
Semantic Scholar
Egg-laying ChickenGTEx resource deciphers context-specific regulatory effects on fertility traits
Di Zhu, Kai Shi, Xiao-Ning Zhu, Conghao Zhong +31 more
2025Nature Communications10 citations Open access
Semantic Scholar
FarmGTEx TWAS-server: an interactive web server for customized TWAS analysis in both human and farm animals
Zhen-Yang Zhang, Zi-Tao Chen, J. Teng, Shuli Liu +10 more
2023bioRxiv6 citations Open access
Semantic Scholar
Association between a genetic index for lameness resistance and the incidence of claw horn lesions in Holstein cows.
M. Barden, A. Anagnostopoulos, B. Griffiths, C. Bedford +6 more
2022The Veterinary Record6 citations
Semantic Scholar
A multi-tissue atlas of genetic regulatory effects in sheep
Mian Gong, Z. Zhuang, Xiang-Rong Sun, Yuan Xu +92 more
2026bioRxiv5 citations Open access
Semantic Scholar
Genome-wide association studies of dairy cattle resistance to digital dermatitis recorded at four distinct lactation stages
Eirini Tarsani, Bing-Jie Li, A. Anagnostopoulos, M. Barden +6 more
2025Scientific Reports5 citations Open access
Semantic Scholar
CellScope: high-performance cell atlas workflow with tree-structured representation
Bing-Jie Li, Runyu Lin, Tian-Hao Ni, Guan-Ao Yan +3 more
2025bioRxiv5 citations Open access
Semantic Scholar
Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing
Hai-Yang Liu, Tong-Xin Cui, Hui-Juan Liu, Jin Zhang +9 more
2024Scientific Data5 citations Open access
Semantic Scholar
Genetic parameters and genome-wide association study of digital cushion thickness in Holstein cows
M. Barden, Bing-Jie Li, B. Griffiths, A. Anagnostopoulos +4 more
2022Journal of Dairy Science5 citations Open access
Semantic Scholar
Manifold fitting reveals metabolomic heterogeneity and disease associations in UK Biobank populations
Bing-Jie Li, Jia-Ji Su, Runyu Lin, Shing-Tung Yau +1 more
2025Proceedings of the National Academy of Sciences of the United States of America4 citations Open access
Semantic Scholar
An atlas of cell type specific regulatory effects in cattle
Hou-Cheng Li, Hui-Cong Zhang, Peng-Ju Zhao, Qi Zhang +44 more
2025bioRxiv4 citations Open access
Semantic Scholar
Genetic parameters of sole lesion recovery in Holstein cows
M. Barden, A. Anagnostopoulos, B. Griffiths, Bing-Jie Li +5 more
2023Journal of Dairy Science4 citations Open access
Semantic Scholar
Genetic Parameters for Dry Matter Intake at Different Lactation Stages among Primiparous Holstein, Jersey and Red Cows
Bing-Jie Li
20143 citations
Semantic Scholar
Lactobacillus salivarius SNK-6 improves egg quality, yolk nutrient composition, and yolk flavor profile in laying hens via modulation of tissue metabolites and Cecal microbiomes
Dan Hao, Hai-Xia Han, Da-Peng Li, Yan Sun +7 more
2026Poultry Science2 citations Open access
Semantic Scholar
Pangenome-based structural variant imputation enables large-scale genotype-phenotype studies in dairy cattle
Liu Yang, Junji Wang, Kristen L. Kuhn, Wen-Li Li +14 more
2026Nature Communications2 citations Open access
Semantic Scholar
Mixed emotion recognition and priming effect on cognitive control
Guan-Xiong Pei, Yu Pan, Tai-Hao Li, Bing-Jie Li +1 more
2024Biomedical Signal Processing and Control2 citations
Semantic Scholar
Mixed Emotion Recognition Based on EEG Signals
Guan-Xiong Pei, Bing-Jie Li, Taihao Li, Cun-Hang Fan +2 more
2023Asia-Pacific Signal and Information Processing Association Annual Summit and Conference2 citations
Semantic Scholar
Decoding Emotional Valence from EEG in Immersive Virtual Reality
Guan-Xiong Pei, Bing-Jie Li, Taihao Li, Ruohao Xu +2 more
2022Asia-Pacific Signal and Information Processing Association Annual Summit and Conference2 citations
Semantic Scholar
Incorporation of Trait-Specific Genetic Information into Genomic Prediction Models.
Shaolei Shi, Zhe Zhang, Bing-Jie Li, Shengli Zhang +1 more
2022Methods in molecular biology2 citations
Semantic Scholar
Genetic properties of feed efficiency and related traits in dairy cattle
Bing-Jie Li
20182 citations
Semantic Scholar
The enhanced multi-tissue atlas of regulatory effects in cattle
Hou-Cheng Li, Hui-Cong Zhang, Di Zhu, Peng-Ju Zhao +86 more
2026bioRxiv1 citations Open access
Semantic Scholar
Sex-specific Genetic Regulatory Effects in Chickens
Haihan Zhang, Bingjin Lin, Yang Xi, Di Zhu +55 more
2026bioRxiv1 citations Open access
Semantic Scholar
Dynamic biomarker-based machine learning model predicts short-term treatment response in multiple myeloma
Yaqin Xiong, Jia-Dai Xu, Bing-Jie Li, Panpan Li +2 more
2026Journal of Translational Medicine1 citations Open access
Semantic Scholar
Localizing Emergent Failures in Agentic AI: Recovering Minimal Repair Families via Counterfactual Replay
Bing-Jie Li, Yumeng Song, Zhong-Ming Yao, Tian-Yi Li
20261 citations
Semantic Scholar

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