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Zhen-Yu Xu · SciRah

Researcher profile · Semantic Scholar

Zhen-Yu Xu

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Zhen-Yu Xu — researcher profile on SciRah

h-index: 17
Works: 26
Citations: 3,331

Most-cited papers

Bidirectional promoters generate pervasive transcription in yeast
Zhen-Yu Xu, Wu Wei, J. Gagneur, F. Perocchi +6 more
2009Nature992 citations Open access
Semantic Scholar
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
Helen Neil, Christophe Malabat, Y. D'Aubenton-Carafa, Zhen-Yu Xu +2 more
2009Nature623 citations
Semantic Scholar
Extensive degradation of RNA precursors by the exosome in wild type cells
R. K. Gudipati, Zhen-Yu Xu, A. Lebreton, B. Séraphin +3 more
2012Molecules and Cells258 citations Open access
Semantic Scholar
GENE LOOPS ENHANCE TRANSCRIPTIONAL DIRECTIONALITY
Sue Mei Tan-Wong, J. Zaugg, Jurgi Camblong, Zhen-Yu Xu +6 more
2012Science255 citations Open access
Semantic Scholar
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
F. Perocchi, Zhen-Yu Xu, Sandra Clauder-Münster, L. Steinmetz
2007Nucleic Acids Research222 citations Open access
Semantic Scholar
Antisense expression increases gene expression variability and locus interdependency
Zhen-Yu Xu, Wu Wei, J. Gagneur, Sandra Clauder-Münster +3 more
2011Molecular Systems Biology197 citations Open access
Semantic Scholar
Set3 HDAC mediates effects of overlapping non-coding transcription on gene induction kinetics
Taesoo Kim, Zhen-Yu Xu, Sandra Clauder-Münster, L. Steinmetz +1 more
2012Cell192 citations Open access
Semantic Scholar
New insights into the performance of human whole-exome capture platforms
Janine Meienberg, K. Žerjavič, Irene Keller, M. Okoniewski +9 more
2015Nucleic Acids Research121 citations Open access
Semantic Scholar
Control of Cdc28 CDK1 by a stress-induced lncRNA
Mariona Nadal-Ribelles, Carme Solé, Zhen-Yu Xu, L. Steinmetz +2 more
2014Molecules and Cells93 citations Open access
Semantic Scholar
iPSC Modeling of RBM20-Deficient DCM Identifies Upregulation of RBM20 as a Therapeutic Strategy
F. Briganti, Hanice Sun, Wu Wei, Jingyan Wu +12 more
2020Cell Reports63 citations Open access
Semantic Scholar
Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast
Manuele Castelnuovo, J. Zaugg, E. Guffanti, Andrea Maffioletti +6 more
2014Nucleic Acids Research57 citations Open access
Semantic Scholar
Cross-platform comparison for the detection of RAS mutations in cfDNA (ddPCR Biorad detection assay, BEAMing assay, and NGS strategy)
Jessica Garcia, J. Forestier, E. Dusserre, A. Wozny +22 more
2018OncoTarget54 citations Open access
Semantic Scholar
Transcription mediated insulation and interference direct gene cluster expression switches
Tania Nguyen, H. Fischl, Françoise S. Howe, Ronja Woloszczuk +10 more
2014eLife44 citations Open access
Semantic Scholar
A privacy-preserving solution for compressed storage and selective retrieval of genomic data
Zhi-Cong Huang, Erman Ayday, Huang Lin, Raeka S. Aiyar +5 more
2016Genome Research35 citations Open access
Semantic Scholar
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Slawomir Kubik, A. C. Marques, Xiaobin Xing, Janine Silvery +25 more
2021Clinical Microbiology and Infection34 citations Open access
Semantic Scholar
Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange
F. Heise, Ho-Ryun Chung, J. Weber, Zhen-Yu Xu +4 more
2011Nucleic Acids Research29 citations Open access
Semantic Scholar
Mutational Hotspot in the SARS-CoV-2 Spike Protein N-Terminal Domain Conferring Immune Escape Potential
Slawomir Kubik, N. Arrigo, J. Bonet, Zhen-Yu Xu
2021bioRxiv17 citations Open access
Semantic Scholar
The Role of Ctk1 Kinase in Termination of Small Non-Coding RNAs
T. Lenstra, Agnieszka Tudek, Sandra Clauder, Zhen-Yu Xu +6 more
2013PLoS ONE17 citations Open access
Semantic Scholar
Single‐cell whole exome and targeted sequencing in NPM1/FLT3 positive pediatric acute myeloid leukemia
C. Walter, Christian Pozzorini, Katarina Reinhardt, R. Geffers +4 more
2018Pediatric Blood & Cancer13 citations
Semantic Scholar
SIGNET: Transcriptome-wide Causal Inference for Gene Regulatory Networks
Zhong-Li Jiang, Cheng Chen, Zhen-Yu Xu, Xiaojian Wang +2 more
2023Research Square6 citations Open access
Semantic Scholar
High-Throughput Nucleotide Resolution Predictions of Assay Limitations Increase the Reliability and Concordance of Clinical Tests.
J. Bieler, Christian Pozzorini, Jessica Garcia, A. C. Tuck +8 more
2021JCO Clinical Cancer Informatics5 citations Open access
Semantic Scholar
Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Slawomir Kubik, A. C. Marques, Xiaobin Xing, Janine Silvery +25 more
2020bioRxiv4 citations Open access
Semantic Scholar
Figure 4—source data 1.
Tania Nguyen, H. Fischl, Françoise S. Howe, Ronja Woloszczuk +10 more
20141 citations Open access
Semantic Scholar
Amplicon Based Panel Targeted Resequencing Identified ZRSR2 As a Potential New Favorable Marker in Pediatric AML
C. Walter, Zhen-Yu Xu, M. Zimmermann, D. Reinhardt +1 more
20160 citations
Semantic Scholar
Author response: Transcription mediated insulation and interference direct gene cluster expression switches
Tania Nguyen, H. Fischl, Françoise S. Howe, Ronja Woloszczuk +10 more
20140 citations Open access
Semantic Scholar
Source Code 1.
Tania Nguyen, H. Fischl, Françoise S. Howe, Ronja Woloszczuk +10 more
20140 citations Open access
Semantic Scholar

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