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Nathan Boley · SciRah

Researcher profile · Semantic Scholar

Nathan Boley

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Nathan Boley — researcher profile on SciRah

h-index: 12
Works: 20
Citations: 3,636

Most-cited papers

The Developmental Transcriptome of Drosophila melanogaster
B. Graveley, Angela N. Brooks, J. Carlson, Michael O. Duff +43 more
2010Nature1,574 citations Open access
Semantic Scholar
Diversity and dynamics of the Drosophila transcriptome
James B. Brown, Nathan Boley, R. Eisman, Gemma E. May +37 more
2014Nature696 citations Open access
Semantic Scholar
University of Birmingham Comparative analysis of the transcriptome across distant species
M. Gerstein, J. Rozowsky, Koon-Kiu Yan, Daifeng Wang +93 more
284 citations
Semantic Scholar
Genome-wide analysis of promoter architecture in Drosophila melanogaster.
R. Hoskins, J. Landolin, James B. Brown, Jeremy E. Sandler +15 more
2011Genome Research242 citations Open access
Semantic Scholar
Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA
Nathan Wan, D. Weinberg, Tzu-Yu Liu, K. Niehaus +26 more
2018BMC Cancer172 citations Open access
Semantic Scholar
Comparative validation of the D. melanogaster modENCODE transcriptome annotation
Zhen-Xia Chen, David Sturgill, J. Qu, Huai-Yang Jiang +59 more
2014Genome Research162 citations Open access
Semantic Scholar
The ENCODE Uniform Analysis Pipelines
B. Hitz, Jin-Wook Lee, O. Jolanki, Meenakshi S. Kagda +56 more
2023bioRxiv143 citations Open access
Semantic Scholar
GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs
Oana Ursu, Nathan Boley, M. Taranova, Y. X. Rachel Wang +3 more
2017bioRxiv129 citations Open access
Semantic Scholar
Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain
F. Dachet, James B. Brown, T. Valyi-Nagy, K. D. Narayan +6 more
2021Scientific Reports74 citations Open access
Semantic Scholar
Subsampling methods for genomic inference
P. Bickel, Nathan Boley, James B. Brown, Haiyan Huang +1 more
201073 citations Open access
Semantic Scholar
Genome-guided transcript assembly from integrative analysis of RNA sequence data
Nathan Boley, M. Stoiber, Benjamin W. Booth, Kenneth H. Wan +4 more
2014Nature Biotechnology53 citations Open access
Semantic Scholar
Navigating and Mining modENCODE Data
Nathan Boley, Kenneth H. Wan, P. Bickel, S. Celniker
2014Methods16 citations Open access
Semantic Scholar
A model for sequential evolution of ligands by exponential enrichment (SELEX) data
Juli Atherton, Nathan Boley, B. Brown, N. Ogawa +4 more
201210 citations Open access
Semantic Scholar
Evaluation of cfDNA as an early detection assay for dense tissue breast cancer
M. Barbirou, Amanda A. Miller, Erik Gafni, A. Mezlini +3 more
2022Scientific Reports9 citations Open access
Semantic Scholar
DE-FPCA: Testing Gene Differential Expression and Exon Usage Through Functional Principal Component Analysis
H. Xiong, James B. Brown, Nathan Boley, P. Bickel +1 more
20146 citations
Semantic Scholar
Su1658 – Machine Learning Enables Detection of Early-Stage Colorectal Cancer by Whole-Genome Sequencing of Plasma Cell-Free Dna
Nathan Wan, D. Weinberg, Tzu-Yu Liu, K. Niehaus +26 more
2019Gastroenterology1 citations
Semantic Scholar
Methods for the Analysis of High Throughput Sequencing Data
Nathan Boley
20141 citations
Semantic Scholar
Author Correction: Perspectives on ENCODE
F. Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian +496 more
2022Nature0 citations Open access
Semantic Scholar
Abstract 2105: Cell-free DNA fragments inform epigenomic mechanisms for early detection of breast cancer
Erik Gafni, Adam J. Harvey, Artur Jaroszewicz, O. S. Solari +10 more
2021Molecular and Cellular Biology/Genetics0 citations
Semantic Scholar
Abstract 4349: Predicting gene expression from plasma cell-free DNA using both the fragment length and fragment position
J. S. St John, Erik Gafni, Brandon White, A. Kannan +4 more
2019Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar

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