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A. Bernheim · SciRah

Researcher profile · Semantic Scholar

A. Bernheim

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A. Bernheim — researcher profile on SciRah

h-index: 28
Works: 72
Citations: 6,793

Most-cited papers

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D. Couvin, A. Bernheim, C. Toffano-Nioche, M. Touchon +6 more
2018Nucleic Acids Res.1,438 citations Open access
Semantic Scholar
Systematic and quantitative view of the antiviral arsenal of prokaryotes
F. Tesson, Alexandre Hervé, Ernest Mordret, M. Touchon +3 more
2021Nature Communications740 citations Open access
Semantic Scholar
The pan-immune system of bacteria: antiviral defence as a community resource
A. Bernheim, R. Sorek
2019Nature Reviews Microbiology640 citations
Semantic Scholar
The highly diverse antiphage defence systems of bacteria
H. Georjon, A. Bernheim
2023Nature Reviews Microbiology489 citations Open access
Semantic Scholar
An expanded arsenal of immune systems that protect bacteria from phages.
A. Millman, S. Melamed, A. Leavitt, S. Doron +18 more
2022Cell Host and Microbe438 citations Open access
Semantic Scholar
Bacterial retrons function in anti-phage defense
A. Millman, A. Bernheim, Avigail Stokar-Avihail, Taya Fedorenko +4 more
2020bioRxiv402 citations Open access
Semantic Scholar
Genetic and life-history traits associated with the distribution of prophages in bacteria
M. Touchon, A. Bernheim, E. Rocha
2016The ISME Journal357 citations Open access
Semantic Scholar
Phages and their satellites encode hotspots of antiviral systems
F. Rousset, F. Depardieu, S. Miele, J. Dowding +6 more
2022Cell Host and Microbe314 citations Open access
Semantic Scholar
Assessment of the health impact of GM plant diets in long-term and multigenerational animal feeding trials: a literature review.
C. Snell, A. Bernheim, J. Bergé, M. Kuntz +3 more
2012Food and Chemical Toxicology241 citations
Semantic Scholar
Prokaryotic viperins produce diverse antiviral molecules
A. Bernheim, A. Millman, G. Ofir, Gilad Meitav +7 more
2020Nature235 citations Open access
Semantic Scholar
Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion
Jeremy Garb, A. Lopatina, A. Bernheim, M. Zaremba +6 more
2021bioRxiv205 citations Open access
Semantic Scholar
Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information
B. Gaborieau, H. Vaysset, F. Tesson, Inès Charachon +10 more
2024Nature Microbiology131 citations Open access
Semantic Scholar
A Eukaryotic-like Serine/Threonine Kinase Protects Staphylococci against Phages.
F. Depardieu, Jean-Philippe Didier, A. Bernheim, Andrew Sherlock +3 more
2016Cell Host and Microbe107 citations Open access
Semantic Scholar
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
A. Bernheim, Alicia Calvo-Villamañán, Clovis Basier, Lun Cui +3 more
2017Nature Communications88 citations Open access
Semantic Scholar
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases
F. Tesson, R. Planel, A. Egorov, H. Georjon +7 more
2024bioRxiv79 citations Open access
Semantic Scholar
A virally encoded tRNA neutralizes the PARIS antiviral defence system
Nathaniel Burman, Svetlana Belukhina, Florence Depardieu, R. Wilkinson +23 more
2024Nature77 citations Open access
Semantic Scholar
Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons
Sanne E. Klompe, Nora Jaber, Leslie Y Beh, J. T. Mohabir +2 more
2022Molecules and Cells74 citations Open access
Semantic Scholar
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
A. Bernheim, D. Bikard, M. Touchon, E. Rocha
2019Nucleic Acids Research56 citations Open access
Semantic Scholar
The immune modules conserved across the tree of life: Towards a definition of ancestral immunity
A. Bernheim, J. Cury, E. Poirier
2024PLoS Biology51 citations Open access
Semantic Scholar
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice,Wiki and Databases
F. Tesson, R. Planel, A. Egorov, H. Georjon +7 more
2024Peer Community Journal49 citations Open access
Semantic Scholar
Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system?
F. Tesson, A. Bernheim
2022Current Opinion in Microbiology49 citations Open access
Semantic Scholar
Genetic exchanges are more frequent in bacteria encoding capsules
O. Rendueles, J. M. D. de Sousa, A. Bernheim, M. Touchon +1 more
2018PLoS Genetics42 citations Open access
Semantic Scholar
Silencing of antibiotic resistance in E. coli with engineered phage bearing small regulatory RNAs.
Vincent K. Libis, A. Bernheim, Clovis Basier, Sebastián Jaramillo-Riveri +12 more
2014ACS Synthetic Biology40 citations Open access
Semantic Scholar
Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems.
Baptiste Darracq, Eloi Littner, Manon Brunie, Julia Bos +11 more
2025Science39 citations Open access
Semantic Scholar
Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements
F. Tesson, Erin Huiting, Linlin Wei, Jie Ren +6 more
2024Nucleic Acids Research37 citations Open access
Semantic Scholar
Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements
F. Tesson, Erin Huiting, Linlin Wei, Jie Ren +6 more
2024bioRxiv36 citations Open access
Semantic Scholar
Human tumor markers: edited by F. Cimino, G.D. Birkmayer, J.V. Klavins, E. Pimentel, F. Salvatore, de Gruyter, Berlin, New York, 1987, pp. 922, DM 380
A. Bernheim
198832 citations
Semantic Scholar
Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold
H. Shomar, H. Georjon, Yanlei Feng, Bismarck Olympio +5 more
2023bioRxiv29 citations Open access
Semantic Scholar
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
A. Bernheim, D. Bikard, M. Touchon, E. Rocha
2019Philosophical Transactions of the Royal Society of London. Biological Sciences27 citations Open access
Semantic Scholar
Conservation of antiviral systems across domains of life reveals immune genes in humans.
J. Cury, Matthieu Haudiquet, Veronica Hernandez Trejo, E. Mordret +9 more
2024Cell Host and Microbe26 citations Open access
Semantic Scholar
Prophage-encoded hotspots of bacterial immune systems
F. Rousset, J. Dowding, A. Bernheim, E. Rocha +1 more
2021bioRxiv24 citations Open access
Semantic Scholar
Conservation of antiviral systems across domains of life reveals novel immune mechanisms in humans
J. Cury, Ernest Mordret, Veronica Hernandez Trejo, F. Tesson +3 more
2022bioRxiv19 citations Open access
Semantic Scholar
Protein and genomic language models uncover the unexplored diversity of bacterial immunity.
E. Mordret, Alexandre Hervé, F. Tesson, H. Vaysset +7 more
2026Science17 citations
Semantic Scholar
A human homolog of SIR2 antiphage proteins mediates immunity via the Toll-like receptor pathway.
Delphine Bonhomme, H. Vaysset, E. Ednacot, V. Rodrigues +15 more
2025Science17 citations Open access
Semantic Scholar
Predicting phage-bacteria interactions at the strain level from genomes
B. Gaborieau, H. Vaysset, F. Tesson, Inès Charachon +10 more
2023bioRxiv17 citations Open access
Semantic Scholar
Genomic characterization of the antiviral arsenal of Actinobacteria
H. Georjon, F. Tesson, H. Shomar, A. Bernheim
2023bioRxiv16 citations Open access
Semantic Scholar
Engineering gene overlaps to sustain genetic constructs in vivo
Antoine L. Decrulle, Antoine Frénoy, Thomas A. Meiller-Legrand, A. Bernheim +3 more
2019bioRxiv15 citations Open access
Semantic Scholar
Viruses cooperate to defeat bacteria
A. Bernheim, R. Sorek
2018Nature14 citations Open access
Semantic Scholar
Strain phylogroup and environmental constraints shape Escherichia coli dynamics and diversity over a 20-year human gut time series
Bénédicte Condamine, T. Morel-Journel, F. Tesson, G. Royer +5 more
2024The ISME Journal12 citations Open access
Semantic Scholar
Structural basis for Lamassu-based antiviral immunity and its evolution from DNA repair machinery
Matthieu Haudiquet, Arpita Chakravarti, Zhiying Zhang, Josephine L. Ramirez +9 more
2025Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
CRISPR-Cas and restriction-modification team up to achieve long-term immunity.
J. Cury, A. Bernheim
2022Trends in Microbiology11 citations Open access
Semantic Scholar
Protein and genomic language models chart a vast landscape of antiphage defenses
E. Mordret, Alexandre Hervé, H. Vaysset, Tyler Clabby +5 more
2025bioRxiv10 citations Open access
Semantic Scholar
The multifaceted roles of NAD+ in bacterial immunity.
H. Vaysset, A. Bernheim
2025Molecules and Cells10 citations
Semantic Scholar
Viral proteins activate PARIS-mediated tRNA degradation and viral tRNAs rescue infection
Nathaniel Burman, Svetlana Belukhina, Florence Depardieu, R. Wilkinson +22 more
2024bioRxiv10 citations Open access
Semantic Scholar
Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons
H. Vaysset, Chance Meers, J. Cury, A. Bernheim +1 more
2024bioRxiv10 citations Open access
Semantic Scholar
Structural basis for Lamassu-based antiviral immunity and its evolution from DNA repair machinery
Matthieu Haudiquet, Arpita Chakravarti, Zhiying Zhang, Josephine L. Ramirez +9 more
2025bioRxiv9 citations Open access
Semantic Scholar
Sedentary chromosomal integrons as biobanks of bacterial anti-phage defence systems
Baptiste Darracq, Eloi Littner, Manon Brunie, Julia Bos +11 more
2024bioRxiv9 citations Open access
Semantic Scholar
Environment and physiology shape antiphage system expression
L. Paoli, Baptiste Laruelle, Rachel Lavenir, A. Loubat +3 more
2025bioRxiv7 citations Open access
Semantic Scholar
A family of lanthipeptides with anti-phage function
H. Shomar, F. Tesson, Marie Guillaume, Véronique M. A. Ongenae +11 more
2024bioRxiv7 citations Open access
Semantic Scholar
Why do bacteria accumulate antiphage defence systems?
Tyler Clabby, F. Tesson, B. Gaborieau, A. Bernheim
2025Philosophical transactions of the Royal Society of London. Series B, Biological sciences5 citations Open access
Semantic Scholar

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F. Tesson×20
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F. Tesson — researcher profile on SciRah
D. Bikard×10
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M. Touchon×9
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H. Vaysset×9
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R. Sorek — researcher profile on SciRah

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H. Shomar — researcher profile on SciRah

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E. Mordret — researcher profile on SciRah

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