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Judith D. Cohn · SciRah

Researcher profile · Semantic Scholar

Judith D. Cohn

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Judith D. Cohn — researcher profile on SciRah

h-index: 13
Works: 24
Citations: 956

Most-cited papers

The sequence and analysis of duplication-rich human chromosome 16
Joel A. Martin, Cliff Han, Laurie A. Gordon, A. Terry +118 more
2004Nature186 citations Open access
Semantic Scholar
Predicting tumor cell line response to drug pairs with deep learning
Fangfang Xia, M. Shukla, T. Brettin, Cristina Garcia-Cardona +8 more
2018BMC Bioinformatics112 citations Open access
Semantic Scholar
Automated ligand fitting by core-fragment fitting and extension into density
T. Terwilliger, H. Klei, P. Adams, N. Moriarty +1 more
2006Acta Crystallographica Section D: Biological Crystallography109 citations Open access
Semantic Scholar
A cross-study analysis of drug response prediction in cancer cell lines
Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, T. Brettin +20 more
2021Briefings Bioinform.88 citations Open access
Semantic Scholar
A categorization approach to automated ontological function annotation
Karin M. Verspoor, Judith D. Cohn, S. Mniszewski, C. Joslyn
2006Protein Science80 citations Open access
Semantic Scholar
Fast dynamics perturbation analysis for prediction of protein functional sites
Dengming Ming, Judith D. Cohn, Michael E. Wall
2008BMC Structural Biology69 citations Open access
Semantic Scholar
Electronic Reprint Biological Crystallography Ligand Identification Using Electron-density Map Correlations Biological Crystallography Ligand Identification Using Electron-density Map Correlations
T. C. Terwilliger, Paul D. Adams, Nigel W. Moriarty, Judith D. Cohn
62 citations
Semantic Scholar
Protein annotation as term categorization in the gene ontology using word proximity networks
Karin M. Verspoor, Judith D. Cohn, C. Joslyn, S. Mniszewski +3 more
2005BMC Bioinformatics55 citations Open access
Semantic Scholar
Literature mining of protein-residue associations with graph rules learned through distant supervision
K. E. Ravikumar, Hai-Bin Liu, Judith D. Cohn, M. E. Wall +1 more
2012Journal of Biomedical Semantics52 citations Open access
Semantic Scholar
Text Mining Improves Prediction of Protein Functional Sites
Karin M. Verspoor, Judith D. Cohn, K. E. Ravikumar, M. E. Wall
2012PLoS ONE39 citations Open access
Semantic Scholar
Rapid phylogenetic and functional classification of short genomic fragments with signature peptides
J. Berendzen, W. Bruno, Judith D. Cohn, N. Hengartner +4 more
2012BMC Research Notes32 citations Open access
Semantic Scholar
Genome Majority Vote Improves Gene Predictions
M. E. Wall, Sindhu V. Raghavan, Judith D. Cohn, J. Dunbar
2011PLoS Comput. Biol.18 citations Open access
Semantic Scholar
Sparse coding of pathology slides compared to transfer learning with deep neural networks
W. Fischer, S. Moudgalya, Judith D. Cohn, Nga T. T. Nguyen +1 more
2018BMC Bioinformatics17 citations Open access
Semantic Scholar
Consistency of gene starts among Burkholderia genomes
J. Dunbar, Judith D. Cohn, M. E. Wall
2011BMC Genomics12 citations Open access
Semantic Scholar
Detection of Protein Catalytic Sites in the Biomedical Literature
Karin M. Verspoor, Andrew D. MacKinlay, Judith D. Cohn, M. E. Wall
2012Pacific Symposium on Biocomputing9 citations Open access
Semantic Scholar
Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature
K. E. Ravikumar, Hai-Bin Liu, Judith D. Cohn, M. E. Wall +1 more
20112011 10th International Conference on Machine Learning and Applications and Workshops7 citations
Semantic Scholar
Protein Annotation as Term Categorization in the Gene Ontology
Karin M. Verspoor, Judith D. Cohn, C. Joslyn, S. Mniszewski +3 more
20044 citations
Semantic Scholar
Prediction of Functional Sites in SCOP Domains using Dynamics Perturbation Analysis
Judith D. Cohn, Dengming Ming, M. E. Wall
20083 citations Open access
Semantic Scholar
XML and genomic data
Judith D. Cohn
2000SIGB2 citations Open access
Semantic Scholar
Correction: California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals
Lindsey Jacobs, B. McMahon, J. Berendzen, J. Longmire +7 more
2019PLoS ONE1 citations Open access
Semantic Scholar
California Condor Microbiomes
B. McMahon, Lindsey Jacobs, J. Fair, J. Longmire +6 more
20170 citations Open access
Semantic Scholar
Making the Dark Matter of Biology Visible
J. Berendzen, Mira Bussod, Judith D. Cohn, N. Hengartner +1 more
20130 citations
Semantic Scholar
Prediction of Functional Sites in 50,000 Protein Domains Using Dynamics Perturbation Analysis
Judith D. Cohn, Dengming Ming, M. E. Wall
20090 citations Open access
Semantic Scholar
POSOLE : Automated Ontological Annotation for Function Prediction
Karin M. Verspoor, Judith D. Cohn, S. Mniszewski, C. Joslyn
20050 citations
Semantic Scholar

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M. E. Wall×8
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M. E. Wall — researcher profile on SciRah
Karin M. Verspoor×7
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Karin M. Verspoor — researcher profile on SciRah
S. Mniszewski×4
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